Atpsckmt (ATP synthase c subunit lysine N-methyltransferase) - Rat Genome Database

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Gene: Atpsckmt (ATP synthase c subunit lysine N-methyltransferase) Rattus norvegicus
Analyze
Symbol: Atpsckmt
Name: ATP synthase c subunit lysine N-methyltransferase
RGD ID: 1560629
Description: Predicted to enable protein-lysine N-methyltransferase activity. Predicted to be involved in positive regulation of sensory perception of pain and regulation of mitochondrial ATP synthesis coupled proton transport. Predicted to be located in mitochondrial crista. Predicted to be active in mitochondrion. Orthologous to human ATPSCKMT (ATP synthase c subunit lysine N-methyltransferase); INTERACTS WITH 4,4'-sulfonyldiphenol; amitrole; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ATP synthase subunit C lysine N-methyltransferase; Fam173b; family with sequence similarity 173, member B; hypothetical protein LOC499561; LOC499561; RGD1560629; similar to RIKEN cDNA A930016P21; uncharacterized protein LOC499561
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8284,313,991 - 84,329,195 (+)NCBIGRCr8
mRatBN7.2282,603,086 - 82,618,325 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl282,603,009 - 82,618,308 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx289,645,379 - 89,660,417 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0287,766,954 - 87,781,992 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0282,823,242 - 82,838,280 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0284,678,892 - 84,694,152 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl284,678,948 - 84,693,988 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02104,351,684 - 104,366,888 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4283,693,155 - 83,708,195 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera278,126,839 - 78,141,895 (+)NCBICelera
Cytogenetic Map2q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
mitochondrial crista  (ISO)
mitochondrion  (IBA,ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:29444090   PMID:30530489  


Genomics

Comparative Map Data
Atpsckmt
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8284,313,991 - 84,329,195 (+)NCBIGRCr8
mRatBN7.2282,603,086 - 82,618,325 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl282,603,009 - 82,618,308 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx289,645,379 - 89,660,417 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0287,766,954 - 87,781,992 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0282,823,242 - 82,838,280 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0284,678,892 - 84,694,152 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl284,678,948 - 84,693,988 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02104,351,684 - 104,366,888 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4283,693,155 - 83,708,195 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera278,126,839 - 78,141,895 (+)NCBICelera
Cytogenetic Map2q23NCBI
ATPSCKMT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38510,225,507 - 10,249,888 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl510,225,507 - 10,249,897 (-)EnsemblGRCh38hg38GRCh38
GRCh37510,225,619 - 10,250,000 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36510,279,438 - 10,303,014 (-)NCBINCBI36Build 36hg18NCBI36
Celera510,266,333 - 10,289,908 (-)NCBICelera
Cytogenetic Map5p15.2NCBI
HuRef510,211,941 - 10,236,335 (-)NCBIHuRef
CHM1_1510,225,496 - 10,249,887 (-)NCBICHM1_1
T2T-CHM13v2.0510,164,829 - 10,189,201 (-)NCBIT2T-CHM13v2.0
Atpsckmt
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391531,602,262 - 31,624,652 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1531,601,998 - 31,621,373 (+)EnsemblGRCm39 Ensembl
GRCm381531,602,116 - 31,617,537 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1531,601,852 - 31,621,227 (+)EnsemblGRCm38mm10GRCm38
MGSCv371531,531,871 - 31,547,290 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361531,546,705 - 31,562,124 (+)NCBIMGSCv36mm8
Celera1532,295,931 - 32,311,400 (+)NCBICelera
Cytogenetic Map15B2NCBI
cM Map1513.02NCBI
Atpsckmt
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955426116,514 - 126,244 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955426116,223 - 131,798 (-)NCBIChiLan1.0ChiLan1.0
ATPSCKMT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2410,451,134 - 10,494,526 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan158,600,135 - 8,648,132 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0510,524,829 - 10,565,898 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1510,400,569 - 10,424,130 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl510,401,684 - 10,416,858 (-)Ensemblpanpan1.1panPan2
ATPSCKMT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1344,049,015 - 4,242,294 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl344,049,126 - 4,067,333 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha348,551,483 - 8,759,150 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0343,951,412 - 4,156,162 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl343,951,562 - 3,970,465 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1344,003,234 - 4,201,212 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0343,982,586 - 4,218,085 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0344,213,142 - 4,411,648 (+)NCBIUU_Cfam_GSD_1.0
Atpsckmt
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213237,047,862 - 237,063,699 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366432,339,070 - 2,354,784 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366432,339,073 - 2,354,780 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATPSCKMT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1672,223,534 - 72,242,064 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11672,223,492 - 72,242,073 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ATPSCKMT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.149,591,946 - 9,786,841 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl49,764,125 - 9,776,361 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606418,757,431 - 18,781,428 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atpsckmt
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247517,598,929 - 7,607,293 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247517,598,307 - 7,614,962 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Atpsckmt
69 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:88
Count of miRNA genes:65
Interacting mature miRNAs:80
Transcripts:ENSRNOT00000046325
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578777Stresp15Stress response QTL 1520.05blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)259846005104846005Rat
2293671Bss44Bone structure and strength QTL 4410.970.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)243162366148478373Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
1598865Bp296Blood pressure QTL 2962.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)281018907126018907Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
1578772Stresp14Stress response QTL 1450.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)282345893130923501Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
2293676Bmd19Bone mineral density QTL 1910.70.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)243162366111362592Rat
2293682Bmd24Bone mineral density QTL 248.90.0001femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)243162366111362592Rat
631198Cm22Cardiac mass QTL 224.30.0008heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)276539322150540526Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)225413423143657569Rat
61465Bp13Blood pressure QTL 133.3blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)276539322102785628Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)278665619219826953Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)243154682202446871Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)240067944102785628Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
631208Bw1Body weight QTL15.09mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)24317101783575226Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)256043031202447032Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
5684990Bmd82Bone mineral density QTL 822.8tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)259324377103795077Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)25873687102844969Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
7411551Bw131Body weight QTL 13129.60.001body mass (VT:0001259)body weight gain (CMO:0000420)267942638112942638Rat
1359034Bp274Blood pressure QTL 274arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)27478666494359546Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118275202447032Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)281689826221035911Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)226917817136917119Rat
2299162Iddm32Insulin dependent diabetes mellitus QTL 322.36blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)278665616143657569Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
61371Edpm1Estrogen-dependent pituitary mass QTL 140.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)23513484188029593Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)276539322202447032Rat
631500Bp99Blood pressure QTL 992.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)259324719102755241Rat
61392Bp6Blood pressure QTL 67arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)280270434125270434Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
5684996Bmd85Bone mineral density QTL 854.70.024tibia mineral mass (VT:1000283)bone mineral density (CMO:0001226)259324377103795077Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
2293835Kiddil5Kidney dilation QTL 53.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607157142209Rat
1558653Prcr1Prostate cancer resistance QTL 15prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)272532993157142209Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)281754530222436696Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)246123260202447032Rat
1558648Smcn1Smooth muscle cell number QTL 10.039blood vessel smooth muscle cell quantity (VT:0010525)aorta smooth muscle cell count per unit vessel length (CMO:0001646)259134147127460910Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607182042367Rat
2306903Bp336Blood pressure QTL 3360.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)264366971109366971Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)274786664206665859Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)243171017184114403Rat
61438Cia7Collagen induced arthritis QTL 74.60.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)259324377141596857Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)226917817127469484Rat

Markers in Region
RH133157  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2282,617,474 - 82,617,689 (+)MAPPERmRatBN7.2
Rnor_6.0284,693,302 - 84,693,516NCBIRnor6.0
Rnor_5.02104,366,038 - 104,366,252UniSTSRnor5.0
RGSC_v3.4283,707,509 - 83,707,723UniSTSRGSC3.4
Celera278,141,209 - 78,141,423UniSTS
RH 3.4 Map2517.2UniSTS
Cytogenetic Map2q22UniSTS
AI104594  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2282,618,097 - 82,618,291 (+)MAPPERmRatBN7.2
Rnor_6.0284,693,925 - 84,694,118NCBIRnor6.0
Rnor_5.02104,366,661 - 104,366,854UniSTSRnor5.0
RGSC_v3.4283,708,132 - 83,708,325UniSTSRGSC3.4
Celera278,141,832 - 78,142,025UniSTS
RH 3.4 Map2517.7UniSTS
Cytogenetic Map2q22UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 42 26 19 26 8 11 74 35 41 11 8
Low 15 15 15
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000046325   ⟹   ENSRNOP00000041476
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl282,603,009 - 82,618,308 (+)Ensembl
Rnor_6.0 Ensembl284,678,948 - 84,693,988 (+)Ensembl
RefSeq Acc Id: NM_001109178   ⟹   NP_001102648
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8284,313,991 - 84,329,031 (+)NCBI
mRatBN7.2282,603,121 - 82,618,161 (+)NCBI
Rnor_6.0284,678,948 - 84,693,988 (+)NCBI
Rnor_5.02104,351,684 - 104,366,888 (+)NCBI
RGSC_v3.4283,693,155 - 83,708,195 (+)RGD
Celera278,126,839 - 78,141,895 (+)RGD
Sequence:
RefSeq Acc Id: XM_039102841   ⟹   XP_038958769
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8284,314,071 - 84,328,479 (+)NCBI
mRatBN7.2282,603,086 - 82,618,325 (+)NCBI
RefSeq Acc Id: XM_039102843   ⟹   XP_038958771
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8284,314,906 - 84,329,195 (+)NCBI
mRatBN7.2282,604,035 - 82,618,325 (+)NCBI
RefSeq Acc Id: XM_039102844   ⟹   XP_038958772
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8284,314,207 - 84,329,195 (+)NCBI
mRatBN7.2282,603,337 - 82,618,325 (+)NCBI
RefSeq Acc Id: XM_039102845   ⟹   XP_038958773
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8284,314,906 - 84,329,195 (+)NCBI
mRatBN7.2282,604,035 - 82,618,325 (+)NCBI
RefSeq Acc Id: XM_039102846   ⟹   XP_038958774
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8284,314,207 - 84,329,195 (+)NCBI
mRatBN7.2282,603,337 - 82,618,325 (+)NCBI
RefSeq Acc Id: XM_039102848   ⟹   XP_038958776
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8284,314,207 - 84,329,195 (+)NCBI
mRatBN7.2282,603,337 - 82,618,325 (+)NCBI
RefSeq Acc Id: XM_039102849   ⟹   XP_038958777
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8284,314,906 - 84,329,195 (+)NCBI
mRatBN7.2282,605,337 - 82,618,325 (+)NCBI
RefSeq Acc Id: XM_063282352   ⟹   XP_063138422
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8284,314,214 - 84,329,195 (+)NCBI
RefSeq Acc Id: NP_001102648   ⟸   NM_001109178
- UniProtKB: D3ZLY0 (UniProtKB/TrEMBL),   A6JN03 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000041476   ⟸   ENSRNOT00000046325
RefSeq Acc Id: XP_038958769   ⟸   XM_039102841
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038958772   ⟸   XM_039102844
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038958774   ⟸   XM_039102846
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038958776   ⟸   XM_039102848
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038958771   ⟸   XM_039102843
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038958773   ⟸   XM_039102845
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038958777   ⟸   XM_039102849
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063138422   ⟸   XM_063282352
- Peptide Label: isoform X2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZLY0-F1-model_v2 AlphaFold D3ZLY0 1-216 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691213
Promoter ID:EPDNEW_R1738
Type:single initiation site
Name:Fam173b_1
Description:family with sequence similarity 173, member B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0284,678,883 - 84,678,943EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1560629 AgrOrtholog
BioCyc Gene G2FUF-53859 BioCyc
Ensembl Genes ENSRNOG00000022347 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOG00055025459 UniProtKB/Swiss-Prot
  ENSRNOG00060023618 UniProtKB/Swiss-Prot
  ENSRNOG00065013023 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000046325 ENTREZGENE
  ENSRNOT00000046325.4 UniProtKB/Swiss-Prot
  ENSRNOT00055043923 UniProtKB/Swiss-Prot
  ENSRNOT00060040883 UniProtKB/Swiss-Prot
  ENSRNOT00065021330 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.50.150 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro FAM173A/B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM-dependent_MTases UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:499561 UniProtKB/Swiss-Prot
NCBI Gene 499561 ENTREZGENE
PANTHER ATP SYNTHASE SUBUNIT C LYSINE N-METHYLTRANSFERASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR13610 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Atpsckmt PhenoGen
RatGTEx ENSRNOG00000022347 RatGTEx
  ENSRNOG00055025459 RatGTEx
  ENSRNOG00060023618 RatGTEx
  ENSRNOG00065013023 RatGTEx
Superfamily-SCOP S-adenosyl-L-methionine-dependent methyltransferases UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
UniProt A6JN03 ENTREZGENE, UniProtKB/TrEMBL
  ACKMT_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-10 Atpsckmt  ATP synthase c subunit lysine N-methyltransferase  Fam173b  family with sequence similarity 173, member B  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-09 Fam173b  family with sequence similarity 173, member B  RGD1560629  similar to RIKEN cDNA A930016P21   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1560629  similar to RIKEN cDNA A930016P21   RGD1560629_predicted  similar to RIKEN cDNA A930016P21 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1560629_predicted  similar to RIKEN cDNA A930016P21 (predicted)  LOC499561  similar to RIKEN cDNA A930016P21  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC499561  similar to RIKEN cDNA A930016P21      Symbol and Name status set to provisional 70820 PROVISIONAL