Esrp1 (epithelial splicing regulatory protein 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Esrp1 (epithelial splicing regulatory protein 1) Rattus norvegicus
Analyze
Symbol: Esrp1
Name: epithelial splicing regulatory protein 1
RGD ID: 1560481
Description: Predicted to enable mRNA binding activity. Predicted to be involved in regulation of RNA splicing and regulation of inner ear auditory receptor cell fate specification. Predicted to act upstream of or within alternative mRNA splicing, via spliceosome; morphogenesis of a branching epithelium; and positive regulation of epithelial cell proliferation. Predicted to be located in nucleus. Predicted to be part of ribonucleoprotein complex. Predicted to be active in nucleoplasm. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 109. Orthologous to human ESRP1 (epithelial splicing regulatory protein 1); INTERACTS WITH amphetamine; bisphenol A; Cuprizon.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC500409; RGD1560481; RNA-binding motif protein 35A; RNA-binding protein 35A; similar to hypothetical protein FLJ20171
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8529,224,831 - 29,279,381 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl529,225,360 - 29,279,278 (-)EnsemblGRCr8
mRatBN7.2524,427,611 - 24,482,157 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl524,428,717 - 24,482,062 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx526,617,058 - 26,670,437 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0528,210,083 - 28,263,462 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0528,010,977 - 28,064,309 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0524,576,988 - 24,631,758 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl524,576,991 - 24,631,698 (-)Ensemblrn6Rnor6.0
Rnor_5.0529,302,577 - 29,357,299 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4525,175,774 - 25,229,179 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera523,646,895 - 23,700,274 (-)NCBICelera
Cytogenetic Map5q13NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nuclear body  (ISO)
nucleoplasm  (IBA,ISO)
nucleus  (IEA,ISO,ISS)
ribonucleoprotein complex  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:19285943   PMID:23825128   PMID:26371508   PMID:29107558  


Genomics

Comparative Map Data
Esrp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8529,224,831 - 29,279,381 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl529,225,360 - 29,279,278 (-)EnsemblGRCr8
mRatBN7.2524,427,611 - 24,482,157 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl524,428,717 - 24,482,062 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx526,617,058 - 26,670,437 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0528,210,083 - 28,263,462 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0528,010,977 - 28,064,309 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0524,576,988 - 24,631,758 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl524,576,991 - 24,631,698 (-)Ensemblrn6Rnor6.0
Rnor_5.0529,302,577 - 29,357,299 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4525,175,774 - 25,229,179 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera523,646,895 - 23,700,274 (-)NCBICelera
Cytogenetic Map5q13NCBI
ESRP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38894,641,174 - 94,707,466 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl894,640,987 - 94,707,466 (+)Ensemblhg38GRCh38
GRCh37895,653,402 - 95,719,694 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36895,722,576 - 95,788,870 (+)NCBIBuild 36Build 36hg18NCBI36
Celera891,839,462 - 91,906,238 (+)NCBICelera
Cytogenetic Map8q22.1NCBI
HuRef890,861,953 - 90,928,360 (+)NCBIHuRef
CHM1_1895,693,809 - 95,760,084 (+)NCBICHM1_1
T2T-CHM13v2.0895,766,111 - 95,832,462 (+)NCBIT2T-CHM13v2.0
Esrp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39411,331,933 - 11,386,783 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl411,331,933 - 11,386,783 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38411,331,933 - 11,386,783 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl411,331,933 - 11,386,783 (-)Ensemblmm10GRCm38
MGSCv37411,259,185 - 11,313,930 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36411,259,080 - 11,311,520 (-)NCBIMGSCv36mm8
Celera411,143,181 - 11,197,808 (-)NCBICelera
Cytogenetic Map4A1NCBI
cM Map45.11NCBI
Esrp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541710,813,593 - 10,882,921 (+)Ensembl
ChiLan1.0NW_00495541710,813,831 - 10,881,238 (+)NCBIChiLan1.0ChiLan1.0
ESRP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27111,970,735 - 112,037,188 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1887,507,763 - 87,574,229 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0891,261,488 - 91,327,990 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1893,202,915 - 93,532,172 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl893,203,198 - 93,530,653 (+)EnsemblpanPan2panpan1.1
ESRP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12939,322,516 - 39,388,363 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2939,333,117 - 39,387,337 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2939,494,996 - 39,550,483 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02939,537,035 - 39,592,713 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2939,537,281 - 39,591,310 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12939,549,474 - 39,604,869 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02939,545,306 - 39,600,742 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02939,986,649 - 40,042,146 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Esrp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530340,101,052 - 40,159,615 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365447,633,071 - 7,691,655 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365447,633,266 - 7,690,624 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ESRP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl441,993,948 - 42,061,236 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1441,993,944 - 42,061,706 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2445,307,127 - 45,373,900 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ESRP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1889,609,723 - 89,679,035 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl889,608,014 - 89,679,037 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603951,157,747 - 51,229,326 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Esrp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247631,998,579 - 2,073,950 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247631,998,560 - 2,073,854 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Esrp1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11132,317,296 - 132,370,873 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Esrp1
631 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:340
Count of miRNA genes:202
Interacting mature miRNAs:239
Transcripts:ENSRNOT00000010846, ENSRNOT00000067129
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2293666Bmd38Bone mineral density QTL 384.4femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)51373115343590997Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)5692228281330203Rat
1358353Srcrtb2Stress Responsive Cort Basal QTL 23.480.003blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)52367149379046465Rat
1300117Hrtrt8Heart rate QTL 83.49heart pumping trait (VT:2000009)heart rate (CMO:0000002)5862723052665523Rat
7394712Emca13Estrogen-induced mammary cancer QTL 13mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)51460607859606078Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)51757663362576633Rat
1578774Tcas8Tongue tumor susceptibility QTL 83.47tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)51570745160707451Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906491770353Rat
2312562Pur18Proteinuria QTL 182.60.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)5692228237468560Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5706553574335773Rat
1641903Alcrsp3Alcohol response QTL 3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)51748608062486080Rat
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906487027358Rat
8552954Pigfal14Plasma insulin-like growth factor 1 level QTL 149blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)52602321171023211Rat
2303577Gluco47Glucose level QTL 473blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51652001961520019Rat
1641922Alcrsp8Alcohol response QTL 8alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)51748608062486080Rat
2313085Bss59Bone structure and strength QTL 592.90.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)5862723053627230Rat
1600358Mamtr5Mammary tumor resistance QTL 5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)52367149368671493Rat

Markers in Region
RH129803  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2524,428,802 - 24,428,984 (+)MAPPERmRatBN7.2
Rnor_6.0524,578,180 - 24,578,361NCBIRnor6.0
Rnor_5.0529,303,769 - 29,303,950UniSTSRnor5.0
RGSC_v3.4525,175,847 - 25,176,028UniSTSRGSC3.4
Celera523,646,968 - 23,647,149UniSTS
RH 3.4 Map5145.2UniSTS
Cytogenetic Map5q13UniSTS
RH132485  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2524,427,722 - 24,427,921 (+)MAPPERmRatBN7.2
Rnor_6.0524,577,100 - 24,577,298NCBIRnor6.0
Rnor_5.0529,302,689 - 29,302,887UniSTSRnor5.0
RGSC_v3.4525,174,767 - 25,174,965UniSTSRGSC3.4
Celera523,645,888 - 23,646,086UniSTS
RH 3.4 Map5140.9UniSTS
Cytogenetic Map5q13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 5 50 78 69 72 41 29 41 6 240 98 2 62 81 92 31 7 7

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001127564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001438008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001438009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001438010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001438011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001438012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001438013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006237877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006237878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006237880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC166735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000010846   ⟹   ENSRNOP00000010846
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl529,231,531 - 29,279,278 (-)Ensembl
mRatBN7.2 Ensembl524,428,717 - 24,482,062 (-)Ensembl
Rnor_6.0 Ensembl524,576,991 - 24,631,679 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000067129   ⟹   ENSRNOP00000063046
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl529,225,952 - 29,279,278 (-)Ensembl
mRatBN7.2 Ensembl524,428,732 - 24,482,062 (-)Ensembl
Rnor_6.0 Ensembl524,578,109 - 24,631,698 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000110297   ⟹   ENSRNOP00000095508
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl529,225,360 - 29,279,278 (-)Ensembl
mRatBN7.2 Ensembl524,428,717 - 24,482,062 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000110555   ⟹   ENSRNOP00000092072
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl529,231,531 - 29,279,278 (-)Ensembl
mRatBN7.2 Ensembl524,428,717 - 24,482,062 (-)Ensembl
RefSeq Acc Id: NM_001127564   ⟹   NP_001121036
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8529,225,950 - 29,279,278 (-)NCBI
mRatBN7.2524,428,730 - 24,482,062 (-)NCBI
Rnor_6.0524,578,107 - 24,631,698 (-)NCBI
Rnor_5.0529,302,577 - 29,357,299 (-)NCBI
RGSC_v3.4525,175,774 - 25,229,179 (-)RGD
Celera523,646,895 - 23,700,274 (-)RGD
Sequence:
RefSeq Acc Id: XM_006237877   ⟹   XP_006237939
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8529,231,537 - 29,279,379 (-)NCBI
mRatBN7.2524,427,611 - 24,482,157 (-)NCBI
Rnor_6.0524,576,988 - 24,631,710 (-)NCBI
Rnor_5.0529,302,577 - 29,357,299 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006237878   ⟹   XP_006237940
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8529,224,831 - 29,279,375 (-)NCBI
mRatBN7.2524,427,611 - 24,482,156 (-)NCBI
Rnor_6.0524,576,988 - 24,631,710 (-)NCBI
Rnor_5.0529,302,577 - 29,357,299 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006237880   ⟹   XP_006237942
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8529,224,831 - 29,279,372 (-)NCBI
mRatBN7.2524,427,611 - 24,482,153 (-)NCBI
Rnor_6.0524,576,988 - 24,631,710 (-)NCBI
Rnor_5.0529,302,577 - 29,357,299 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039110538   ⟹   XP_038966466
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8529,231,537 - 29,279,381 (-)NCBI
mRatBN7.2524,427,611 - 24,481,790 (-)NCBI
RefSeq Acc Id: XM_039110539   ⟹   XP_038966467
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8529,231,537 - 29,268,262 (-)NCBI
mRatBN7.2524,427,611 - 24,470,489 (-)NCBI
RefSeq Acc Id: XM_039110540   ⟹   XP_038966468
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8529,231,537 - 29,266,108 (-)NCBI
mRatBN7.2524,427,611 - 24,466,243 (-)NCBI
RefSeq Acc Id: XM_063288190   ⟹   XP_063144260
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8529,231,531 - 29,279,377 (-)NCBI
RefSeq Acc Id: XM_063288191   ⟹   XP_063144261
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8529,231,531 - 29,279,375 (-)NCBI
RefSeq Acc Id: XM_063288192   ⟹   XP_063144262
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8529,224,831 - 29,279,376 (-)NCBI
RefSeq Acc Id: XM_063288193   ⟹   XP_063144263
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8529,224,831 - 29,279,375 (-)NCBI
RefSeq Acc Id: XM_063288195   ⟹   XP_063144265
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8529,224,831 - 29,268,262 (-)NCBI
RefSeq Acc Id: XM_063288196   ⟹   XP_063144266
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8529,224,831 - 29,266,108 (-)NCBI
RefSeq Acc Id: NP_001121036   ⟸   NM_001127564
- UniProtKB: B2RYD2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006237939   ⟸   XM_006237877
- Peptide Label: isoform X3
- UniProtKB: B2RYD2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006237942   ⟸   XM_006237880
- Peptide Label: isoform X6
- UniProtKB: B2RYD2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006237940   ⟸   XM_006237878
- Peptide Label: isoform X4
- Sequence:
Ensembl Acc Id: ENSRNOP00000063046   ⟸   ENSRNOT00000067129
Ensembl Acc Id: ENSRNOP00000010846   ⟸   ENSRNOT00000010846
RefSeq Acc Id: XP_038966466   ⟸   XM_039110538
- Peptide Label: isoform X2
- UniProtKB: B2RYD2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038966467   ⟸   XM_039110539
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038966468   ⟸   XM_039110540
- Peptide Label: isoform X9
Ensembl Acc Id: ENSRNOP00000095508   ⟸   ENSRNOT00000110297
Ensembl Acc Id: ENSRNOP00000092072   ⟸   ENSRNOT00000110555
RefSeq Acc Id: XP_063144262   ⟸   XM_063288192
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063144263   ⟸   XM_063288193
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063144265   ⟸   XM_063288195
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063144266   ⟸   XM_063288196
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063144260   ⟸   XM_063288190
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063144261   ⟸   XM_063288191
- Peptide Label: isoform X5
- UniProtKB: B2RYD2 (UniProtKB/Swiss-Prot),   A0A8I6AFU1 (UniProtKB/TrEMBL)
Protein Domains
RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B2RYD2-F1-model_v2 AlphaFold B2RYD2 1-677 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693564
Promoter ID:EPDNEW_R4089
Type:initiation region
Name:Esrp1_1
Description:epithelial splicing regulatory protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0524,631,570 - 24,631,630EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1560481 AgrOrtholog
BioCyc Gene G2FUF-41947 BioCyc
Ensembl Genes ENSRNOG00000008184 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000010846 ENTREZGENE
  ENSRNOT00000067129 ENTREZGENE
  ENSRNOT00000110297 ENTREZGENE
  ENSRNOT00000110555 ENTREZGENE
Gene3D-CATH 3.30.420.10 UniProtKB/Swiss-Prot
  3.30.70.330 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7936665 IMAGE-MGC_LOAD
InterPro ESRP UniProtKB/Swiss-Prot
  Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot
  RBD_domain_sf UniProtKB/Swiss-Prot
  RNaseH-like_sf UniProtKB/Swiss-Prot
  RNaseH_sf UniProtKB/Swiss-Prot
  RRM_dom UniProtKB/Swiss-Prot
KEGG Report rno:500409 UniProtKB/Swiss-Prot
MGC_CLONE MGC:188460 IMAGE-MGC_LOAD
NCBI Gene 500409 ENTREZGENE
PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED UniProtKB/Swiss-Prot
PhenoGen Esrp1 PhenoGen
PROSITE RRM UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000008184 RatGTEx
SMART RRM UniProtKB/Swiss-Prot
Superfamily-SCOP SSF53098 UniProtKB/Swiss-Prot
  SSF54928 UniProtKB/Swiss-Prot
UniProt A0A8I6AFU1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6APB2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2QVS8 ENTREZGENE, UniProtKB/TrEMBL
  A6JFT3 ENTREZGENE, UniProtKB/TrEMBL
  B2RYD2 ENTREZGENE, UniProtKB/Swiss-Prot
  F1LP81 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 RGD1560481  similar to hypothetical protein FLJ20171   RGD1560481_predicted  similar to hypothetical protein FLJ20171 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1560481_predicted  similar to hypothetical protein FLJ20171 (predicted)  LOC500409  similar to hypothetical protein FLJ20171  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC500409  similar to hypothetical protein FLJ20171      Symbol and Name status set to provisional 70820 PROVISIONAL