Zfp94 (zinc finger protein 94) - Rat Genome Database

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Gene: Zfp94 (zinc finger protein 94) Rattus norvegicus
Analyze
Symbol: Zfp94
Name: zinc finger protein 94
RGD ID: 1560430
Description: Orthologous to human ZNF45 (zinc finger protein 45); INTERACTS WITH 6-propyl-2-thiouracil; amitrole; ammonium chloride.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: MGC114501
RGD Orthologs
Human
Mouse
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8188,986,094 - 89,007,584 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl188,992,642 - 88,999,155 (-)EnsemblGRCr8
mRatBN7.2179,858,188 - 79,879,702 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl179,859,180 - 79,879,612 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx185,258,056 - 85,273,102 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0193,808,164 - 93,823,046 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0187,013,862 - 87,028,912 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0181,137,495 - 81,152,458 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl181,122,790 - 81,152,384 (-)Ensemblrn6Rnor6.0
Rnor_5.0182,400,947 - 82,415,895 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4179,519,605 - 79,534,481 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera174,319,166 - 74,334,042 (-)NCBICelera
Cytogenetic Map1q21NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleoplasm  (IEA,ISO)
nucleus  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:9570955  


Genomics

Comparative Map Data
Zfp94
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8188,986,094 - 89,007,584 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl188,992,642 - 88,999,155 (-)EnsemblGRCr8
mRatBN7.2179,858,188 - 79,879,702 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl179,859,180 - 79,879,612 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx185,258,056 - 85,273,102 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0193,808,164 - 93,823,046 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0187,013,862 - 87,028,912 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0181,137,495 - 81,152,458 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl181,122,790 - 81,152,384 (-)Ensemblrn6Rnor6.0
Rnor_5.0182,400,947 - 82,415,895 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4179,519,605 - 79,534,481 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera174,319,166 - 74,334,042 (-)NCBICelera
Cytogenetic Map1q21NCBI
ZNF45
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381943,912,624 - 43,935,282 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1943,910,549 - 43,935,306 (-)Ensemblhg38GRCh38
GRCh371944,416,776 - 44,439,434 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361949,108,621 - 49,121,397 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341949,108,620 - 49,121,398NCBI
Celera1941,220,299 - 41,242,935 (-)NCBICelera
Cytogenetic Map19q13.31NCBI
HuRef1940,849,021 - 40,871,663 (-)NCBIHuRef
CHM1_11944,418,713 - 44,441,340 (-)NCBICHM1_1
T2T-CHM13v2.01946,735,535 - 46,758,192 (-)NCBIT2T-CHM13v2.0
Zfp94
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39724,001,129 - 24,016,091 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl724,001,129 - 24,016,091 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38724,301,704 - 24,316,698 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl724,301,704 - 24,316,666 (-)Ensemblmm10GRCm38
MGSCv37725,086,815 - 25,101,623 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36724,010,556 - 24,029,739 (-)NCBIMGSCv36mm8
Celera718,924,725 - 18,939,536 (-)NCBICelera
Cytogenetic Map7A3NCBI
cM Map710.27NCBI

Variants

.
Variants in Zfp94
84 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:451
Count of miRNA genes:247
Interacting mature miRNAs:298
Transcripts:ENSRNOT00000026263
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)151940904101229020Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)187889942132889942Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14630261591302615Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)14630261591302615Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
1331800Scl25Serum cholesterol level QTL 253.013blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)187785026142582336Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183019780128019780Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)166404680111404680Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)14630261591302615Rat
631512Scl6Serum cholesterol level QTL 69.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)18126986099645535Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)166009857160501508Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)14630261591302615Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)166400974132889942Rat
1549903Bp267Blood pressure QTL 267arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)184107164115183752Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)151511344153680016Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16540563796805205Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15190920691302615Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)186622262131622262Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)158769992103769992Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)14630261591302615Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)166077886111077886Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
152025249Scl82Serum cholesterol level QTL 824.77blood cholesterol amount (VT:0000180)152891222109116986Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)186993904131993904Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)187558587132558587Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)14630261591302615Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 162 91 90 59 90 59 6 354 190 11 141 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000026252   ⟹   ENSRNOP00000026252
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl188,977,921 - 88,980,314 (-)Ensembl
mRatBN7.2 Ensembl179,850,014 - 79,852,407 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000026263   ⟹   ENSRNOP00000026264
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl188,992,642 - 88,999,155 (-)Ensembl
mRatBN7.2 Ensembl179,859,180 - 79,879,612 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000088431   ⟹   ENSRNOP00000073100
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl188,977,921 - 88,982,317 (-)Ensembl
mRatBN7.2 Ensembl179,850,014 - 79,871,249 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000105628   ⟹   ENSRNOP00000095401
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl179,850,014 - 79,852,761 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000110811   ⟹   ENSRNOP00000087905
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl179,850,014 - 79,858,031 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000115645   ⟹   ENSRNOP00000085711
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl179,850,014 - 79,857,764 (-)Ensembl
RefSeq Acc Id: NM_001037212   ⟹   NP_001032289
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8188,992,639 - 89,007,515 (-)NCBI
mRatBN7.2179,864,733 - 79,879,610 (-)NCBI
Rnor_6.0181,137,508 - 81,152,384 (-)NCBI
Rnor_5.0182,400,947 - 82,415,895 (-)NCBI
RGSC_v3.4179,519,605 - 79,534,481 (-)RGD
Celera174,319,166 - 74,334,042 (-)RGD
Sequence:
RefSeq Acc Id: XM_039087095   ⟹   XP_038943023
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8188,992,639 - 88,999,296 (-)NCBI
mRatBN7.2179,864,696 - 79,879,702 (-)NCBI
RefSeq Acc Id: XM_039087099   ⟹   XP_038943027
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8188,992,639 - 89,007,502 (-)NCBI
mRatBN7.2179,864,696 - 79,879,702 (-)NCBI
RefSeq Acc Id: XM_039087102   ⟹   XP_038943030
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8188,986,094 - 89,007,584 (-)NCBI
mRatBN7.2179,864,696 - 79,879,699 (-)NCBI
RefSeq Acc Id: XM_063270841   ⟹   XP_063126911
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8188,986,094 - 88,999,296 (-)NCBI
RefSeq Acc Id: XM_063270843   ⟹   XP_063126913
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8188,992,639 - 88,999,296 (-)NCBI
RefSeq Acc Id: XM_063270844   ⟹   XP_063126914
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8188,986,094 - 89,004,596 (-)NCBI
RefSeq Acc Id: XM_063270845   ⟹   XP_063126915
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8188,986,094 - 89,004,625 (-)NCBI
RefSeq Acc Id: XM_063270846   ⟹   XP_063126916
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8188,986,094 - 89,007,502 (-)NCBI
RefSeq Acc Id: NP_001032289   ⟸   NM_001037212
- UniProtKB: F1M973 (UniProtKB/TrEMBL),   Q32P35 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038943027   ⟸   XM_039087099
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038943023   ⟸   XM_039087095
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038943030   ⟸   XM_039087102
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000026264   ⟸   ENSRNOT00000026263
Ensembl Acc Id: ENSRNOP00000073100   ⟸   ENSRNOT00000088431
Ensembl Acc Id: ENSRNOP00000095401   ⟸   ENSRNOT00000105628
Ensembl Acc Id: ENSRNOP00000087905   ⟸   ENSRNOT00000110811
Ensembl Acc Id: ENSRNOP00000085711   ⟸   ENSRNOT00000115645
Ensembl Acc Id: ENSRNOP00000026252   ⟸   ENSRNOT00000026252
RefSeq Acc Id: XP_063126916   ⟸   XM_063270846
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063126915   ⟸   XM_063270845
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063126914   ⟸   XM_063270844
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063126911   ⟸   XM_063270841
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063126913   ⟸   XM_063270843
- Peptide Label: isoform X1
Protein Domains
C2H2-type   KRAB

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689788
Promoter ID:EPDNEW_R313
Type:single initiation site
Name:Zfp61_1
Description:zinc finger protein 61
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0181,152,440 - 81,152,500EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1560430 AgrOrtholog
BioCyc Gene G2FUF-60457 BioCyc
Ensembl Genes ENSRNOG00000019416 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000065649 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000026252.6 UniProtKB/TrEMBL
  ENSRNOT00000026263 ENTREZGENE
  ENSRNOT00000026263.7 UniProtKB/TrEMBL
  ENSRNOT00000088431.3 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7456297 IMAGE-MGC_LOAD
InterPro KRAB_dom_sf UniProtKB/TrEMBL
  Krueppel-associated_box UniProtKB/TrEMBL
  Krueppel_C2H2_ZnF UniProtKB/TrEMBL
  Zinc_finger UniProtKB/TrEMBL
  Znf_C2H2-type UniProtKB/TrEMBL
  Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
KEGG Report rno:499095 UniProtKB/TrEMBL
MGC_CLONE MGC:114501 IMAGE-MGC_LOAD
NCBI Gene 499095 ENTREZGENE
PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE PRDM9-RELATED UniProtKB/TrEMBL
  KRAB DOMAIN C2H2 ZINC FINGER UniProtKB/TrEMBL
  KRAB DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  PR DOMAIN ZINC FINGER PROTEIN UniProtKB/TrEMBL
  RIKEN CDNA 6720489N17 GENE-RELATED UniProtKB/TrEMBL
  TRANSCRIPTIONAL REPRESSOR PROTEIN YY UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 143 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 771 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN ZFP2 UniProtKB/TrEMBL
  ZNF44 PROTEIN UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PhenoGen Zfp94 PhenoGen
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000019416 RatGTEx
  ENSRNOG00000065649 RatGTEx
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP Krueppel-associated_box UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A0G2K4M5_RAT UniProtKB/TrEMBL
  A6J8X6_RAT UniProtKB/TrEMBL
  F1M973 ENTREZGENE, UniProtKB/TrEMBL
  F1M975_RAT UniProtKB/TrEMBL
  O35481_RAT UniProtKB/TrEMBL
  Q32P35 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-02-09 Zfp94  zinc finger protein 94      Symbol and Name status set to provisional 70820 PROVISIONAL