Tspan18 (tetraspanin 18) - Rat Genome Database

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Gene: Tspan18 (tetraspanin 18) Rattus norvegicus
Analyze
Symbol: Tspan18
Name: tetraspanin 18
RGD ID: 1560411
Description: Predicted to be involved in regulation of sprouting angiogenesis. Predicted to act upstream of or within several processes, including calcium-ion regulated exocytosis; hemostasis; and inflammatory response. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to human TSPAN18 (tetraspanin 18); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; amitrole.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC311210; RGD1560411; similar to Hypothetical protein 6720430O15; tetraspanin-18
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8399,615,465 - 99,755,270 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl399,615,466 - 99,755,270 (-)EnsemblGRCr8
mRatBN7.2379,160,060 - 79,299,907 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl379,161,662 - 79,299,852 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx382,634,272 - 82,774,000 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0391,233,326 - 91,373,052 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0389,085,209 - 89,224,609 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0382,097,068 - 82,236,694 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl382,097,068 - 82,236,664 (-)Ensemblrn6Rnor6.0
Rnor_5.0388,799,484 - 88,939,072 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4377,602,718 - 77,742,512 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera378,363,376 - 78,502,825 (-)NCBICelera
Cytogenetic Map3q31NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,4'-trichlorobiphenyl  (ISO)
2-methylcholine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
amitrole  (EXP)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (ISO)
benzo[e]pyrene  (ISO)
Benzo[ghi]perylene  (ISO)
Benzo[k]fluoranthene  (ISO)
bisphenol A  (EXP,ISO)
buta-1,3-diene  (ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlordecone  (ISO)
chloroprene  (ISO)
chrysene  (ISO)
cisplatin  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
crocidolite asbestos  (ISO)
Cuprizon  (EXP)
DDE  (ISO)
decabromodiphenyl ether  (EXP)
dibenz[a,h]anthracene  (ISO)
Dibutyl phosphate  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
fipronil  (EXP)
fulvestrant  (ISO)
gentamycin  (EXP)
glycidol  (EXP)
hydralazine  (ISO)
lead(0)  (ISO)
lipopolysaccharide  (ISO)
methapyrilene  (ISO)
methimazole  (EXP)
methoxychlor  (EXP)
mono(2-ethylhexyl) phthalate  (ISO)
monobenzyl phthalate  (ISO)
Monobutylphthalate  (ISO)
monoethyl phthalate  (ISO)
nickel atom  (ISO)
ozone  (ISO)
paracetamol  (EXP)
PCB138  (ISO)
pentanal  (ISO)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
propanal  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
tetraphene  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Tspan18
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8399,615,465 - 99,755,270 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl399,615,466 - 99,755,270 (-)EnsemblGRCr8
mRatBN7.2379,160,060 - 79,299,907 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl379,161,662 - 79,299,852 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx382,634,272 - 82,774,000 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0391,233,326 - 91,373,052 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0389,085,209 - 89,224,609 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0382,097,068 - 82,236,694 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl382,097,068 - 82,236,664 (-)Ensemblrn6Rnor6.0
Rnor_5.0388,799,484 - 88,939,072 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4377,602,718 - 77,742,512 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera378,363,376 - 78,502,825 (-)NCBICelera
Cytogenetic Map3q31NCBI
TSPAN18
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381144,726,310 - 44,932,423 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1144,726,465 - 44,932,423 (+)Ensemblhg38GRCh38
GRCh371144,748,512 - 44,953,974 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361144,837,628 - 44,909,463 (+)NCBIBuild 36Build 36hg18NCBI36
Celera1144,932,703 - 45,100,673 (+)NCBICelera
Cytogenetic Map11p11.2NCBI
HuRef1144,496,710 - 44,664,644 (+)NCBIHuRef
CHM1_11144,785,142 - 44,953,229 (+)NCBICHM1_1
T2T-CHM13v2.01144,883,873 - 45,089,263 (+)NCBIT2T-CHM13v2.0
Tspan18
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39293,032,105 - 93,164,898 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl293,032,105 - 93,164,850 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38293,201,760 - 93,334,551 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl293,201,760 - 93,334,505 (-)Ensemblmm10GRCm38
MGSCv37293,041,917 - 93,174,644 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36293,002,599 - 93,135,289 (-)NCBIMGSCv36mm8
Celera294,597,454 - 94,729,881 (-)NCBICelera
Cytogenetic Map2E1NCBI
cM Map251.37NCBI
Tspan18
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554222,833,130 - 2,871,460 (-)Ensembl
ChiLan1.0NW_0049554222,833,124 - 2,871,460 (-)NCBIChiLan1.0ChiLan1.0
TSPAN18
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2946,940,695 - 47,144,819 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11146,947,103 - 47,148,202 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01144,686,159 - 44,890,196 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11145,180,395 - 45,384,114 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1145,349,629 - 45,384,101 (+)EnsemblpanPan2panpan1.1
TSPAN18
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11844,386,676 - 44,539,859 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1844,388,761 - 44,445,847 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1843,116,656 - 43,302,513 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01845,045,146 - 45,231,055 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1845,045,225 - 45,105,837 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11844,528,315 - 44,714,214 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01844,081,829 - 44,267,706 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01844,815,088 - 45,000,937 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tspan18
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494721,730,017 - 21,776,978 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365623,843,780 - 3,857,679 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365623,842,035 - 3,968,555 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TSPAN18
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl217,465,633 - 17,634,715 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1217,465,624 - 17,671,737 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2219,000,959 - 19,021,135 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TSPAN18
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1120,418,064 - 20,628,756 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl120,419,131 - 20,442,651 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666038117,663,040 - 117,866,186 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tspan18
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247673,362,738 - 3,378,177 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247673,362,738 - 3,459,336 (-)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Tspan18
548 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:342
Count of miRNA genes:198
Interacting mature miRNAs:244
Transcripts:ENSRNOT00000011650
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)351490129111359995Rat
1358293Bw38Body weight QTL 3860.0000031body mass (VT:0001259)body weight (CMO:0000012)374364268119364268Rat
61377Edpm3Estrogen-dependent pituitary mass QTL 37.050.038pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)373592611110333156Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)396509147141509147Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)373592512136118980Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)367641776167835660Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)358601291153936591Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)349872657138829559Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)385062224136118980Rat
1582210Bw71Body weight QTL 713.30.0012body mass (VT:0001259)body weight (CMO:0000012)385062224136118980Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)381425008141509147Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)370845569136091483Rat
1600376Arunc5Aerobic running capacity QTL 50.21exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)393829559138829559Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)379649560177741895Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)396509147141509147Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat
738019Anxrr10Anxiety related response QTL 103.9exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)358925062103925062Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)370311536115311536Rat
631200Cm25Cardiac mass QTL 254.80.0001heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)381541464126563126Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)390755164141509147Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)336721849110333156Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)342158111124558371Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)398651826167012663Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)342158111124558371Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat

Markers in Region
D3Rat222  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8399,740,665 - 99,740,794 (+)Marker Load Pipeline
mRatBN7.2379,285,268 - 79,285,397 (+)MAPPERmRatBN7.2
Rnor_6.0384,243,073 - 84,243,201NCBIRnor6.0
Rnor_6.0382,222,060 - 82,222,188NCBIRnor6.0
Rnor_5.0390,945,643 - 90,945,771UniSTSRnor5.0
Rnor_5.0388,924,451 - 88,924,579UniSTSRnor5.0
RGSC_v3.4377,727,907 - 77,728,035RGDRGSC3.4
RGSC_v3.4377,727,908 - 77,728,036UniSTSRGSC3.4
Celera378,488,221 - 78,488,349UniSTS
RGSC_v3.1377,624,335 - 77,624,463RGD
SHRSP x BN Map342.7898RGD
SHRSP x BN Map342.7898UniSTS
Cytogenetic Map3q24UniSTS
D5S1969  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2379,181,443 - 79,182,851 (+)MAPPERmRatBN7.2
mRatBN7.239,074,991 - 9,075,594 (+)MAPPERmRatBN7.2
Rnor_6.0382,118,453 - 82,119,922NCBIRnor6.0
Rnor_6.033,702,322 - 3,702,924NCBIRnor6.0
Rnor_5.039,064,115 - 9,064,717UniSTSRnor5.0
Rnor_5.0388,820,870 - 88,822,339UniSTSRnor5.0
Cytogenetic Map3q24UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 158 91 90 59 84 59 6 348 184 11 137 81 92 31 16 16

Sequence


Ensembl Acc Id: ENSRNOT00000011650   ⟹   ENSRNOP00000011650
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl399,615,466 - 99,755,270 (-)Ensembl
mRatBN7.2 Ensembl379,161,662 - 79,299,852 (-)Ensembl
Rnor_6.0 Ensembl382,097,068 - 82,236,664 (-)Ensembl
RefSeq Acc Id: NM_001107750   ⟹   NP_001101220
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8399,615,466 - 99,755,270 (-)NCBI
mRatBN7.2379,160,060 - 79,299,873 (-)NCBI
Rnor_6.0382,097,068 - 82,236,664 (-)NCBI
Rnor_5.0388,799,484 - 88,939,072 (-)NCBI
RGSC_v3.4377,602,718 - 77,742,512 (-)RGD
Celera378,363,376 - 78,502,825 (-)RGD
Sequence:
RefSeq Acc Id: XM_006234574   ⟹   XP_006234636
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8399,615,465 - 99,755,175 (-)NCBI
mRatBN7.2379,161,699 - 79,299,907 (-)NCBI
Rnor_6.0382,097,070 - 82,236,694 (-)NCBI
Rnor_5.0388,799,484 - 88,939,072 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039104911   ⟹   XP_038960839
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8399,615,465 - 99,709,223 (-)NCBI
mRatBN7.2379,161,699 - 79,253,815 (-)NCBI
RefSeq Acc Id: XM_039104912   ⟹   XP_038960840
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8399,615,465 - 99,755,175 (-)NCBI
mRatBN7.2379,161,699 - 79,299,907 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001101220 (Get FASTA)   NCBI Sequence Viewer  
  XP_006234636 (Get FASTA)   NCBI Sequence Viewer  
  XP_038960839 (Get FASTA)   NCBI Sequence Viewer  
  XP_038960840 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL79587 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000011650
  ENSRNOP00000011650.5
RefSeq Acc Id: NP_001101220   ⟸   NM_001107750
- UniProtKB: D4A3U2 (UniProtKB/TrEMBL),   A6HNI6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006234636   ⟸   XM_006234574
- Peptide Label: isoform X1
- UniProtKB: D4A3U2 (UniProtKB/TrEMBL),   A6HNI6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000011650   ⟸   ENSRNOT00000011650
RefSeq Acc Id: XP_038960840   ⟸   XM_039104912
- Peptide Label: isoform X1
- UniProtKB: D4A3U2 (UniProtKB/TrEMBL),   A6HNI6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038960839   ⟸   XM_039104911
- Peptide Label: isoform X1
- UniProtKB: D4A3U2 (UniProtKB/TrEMBL),   A6HNI6 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A3U2-F1-model_v2 AlphaFold D4A3U2 1-248 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692230
Promoter ID:EPDNEW_R2755
Type:multiple initiation site
Name:Tspan18_1
Description:tetraspanin 18
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0382,236,644 - 82,236,704EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1560411 AgrOrtholog
BioCyc Gene G2FUF-48671 BioCyc
Ensembl Genes ENSRNOG00000008758 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000011650 ENTREZGENE
  ENSRNOT00000011650.6 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1450.10 UniProtKB/TrEMBL
InterPro Tetraspanin UniProtKB/TrEMBL
  Tetraspanin_CS UniProtKB/TrEMBL
  Tetraspanin_EC2 UniProtKB/TrEMBL
  Tetraspanin_sub UniProtKB/TrEMBL
KEGG Report rno:311210 UniProtKB/TrEMBL
NCBI Gene 311210 ENTREZGENE
PANTHER PTHR19282 UniProtKB/TrEMBL
  TETRASPANIN-18 UniProtKB/TrEMBL
Pfam Tetraspannin UniProtKB/TrEMBL
PhenoGen Tspan18 PhenoGen
PIRSF Tetraspanin UniProtKB/TrEMBL
PRINTS TMFOUR UniProtKB/TrEMBL
PROSITE TM4_1 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000008758 RatGTEx
Superfamily-SCOP Tetraspanin UniProtKB/TrEMBL
UniProt A6HNI6 ENTREZGENE, UniProtKB/TrEMBL
  D4A3U2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Tspan18  tetraspanin 18   Tspan18_predicted  tetraspanin 18 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Tspan18_predicted  tetraspanin 18 (predicted)  RGD1560411_predicted  similar to Hypothetical protein 6720430O15 (predicted)  Symbol and Name updated 1299863 APPROVED
2006-03-07 RGD1560411_predicted  similar to Hypothetical protein 6720430O15 (predicted)  LOC311210  similar to Hypothetical protein 6720430O15  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC311210  similar to Hypothetical protein 6720430O15      Symbol and Name status set to provisional 70820 PROVISIONAL