Msi2 (musashi RNA-binding protein 2) - Rat Genome Database

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Gene: Msi2 (musashi RNA-binding protein 2) Rattus norvegicus
Analyze
Symbol: Msi2
Name: musashi RNA-binding protein 2
RGD ID: 1560397
Description: Predicted to enable identical protein binding activity; mRNA binding activity; and poly(U) RNA binding activity. Predicted to be involved in central nervous system development; regulation of translation; and stem cell development. Predicted to be located in cytosol and intracellular membrane-bounded organelle. Predicted to be part of polysome. Predicted to be active in cytoplasm. Orthologous to human MSI2 (musashi RNA binding protein 2); PARTICIPATES IN mRNA decay pathway; INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-Tetrachlorodibenzofuran; bisphenol A.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC360596; Musashi homolog 2; Musashi homolog 2 (Drosophila); RGD1560397; RNA-binding protein Musashi homolog 2; similar to RNA-binding protein Musashi2-S
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21073,143,760 - 73,510,566 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1073,147,380 - 73,510,157 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01075,673,840 - 76,040,106 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1075,681,393 - 76,039,964 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01074,071,835 - 74,435,491 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41076,776,415 - 77,149,277 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1072,051,638 - 72,417,027 (-)NCBICelera
Cytogenetic Map10q26NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP,ISO)
1,4-dichlorobenzene  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2-methylcholine  (ISO)
4-hydroxyphenyl retinamide  (ISO)
acrolein  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
antimycin A  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chloroprene  (EXP)
cisplatin  (EXP)
cobalt dichloride  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
CU-O LINKAGE  (ISO)
cyclosporin A  (ISO)
cylindrospermopsin  (ISO)
deguelin  (ISO)
dibenz[a,h]anthracene  (ISO)
dibutyl phthalate  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
fenpyroximate  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
fulvestrant  (ISO)
genistein  (ISO)
hydrogen cyanide  (ISO)
hydrogen peroxide  (ISO)
leflunomide  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
milrinone  (EXP)
N,N-diethyl-m-toluamide  (EXP)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (ISO)
permethrin  (EXP)
phenylmercury acetate  (ISO)
picoxystrobin  (ISO)
pirinixic acid  (ISO)
potassium cyanide  (ISO)
pyrimidifen  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
sunitinib  (ISO)
tebufenpyrad  (ISO)
testosterone  (ISO)
thifluzamide  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
trichostatin A  (ISO)
troglitazone  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11588182   PMID:12407178   PMID:22658674   PMID:22681889   PMID:30367664  


Genomics

Comparative Map Data
Msi2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21073,143,760 - 73,510,566 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1073,147,380 - 73,510,157 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01075,673,840 - 76,040,106 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1075,681,393 - 76,039,964 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01074,071,835 - 74,435,491 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41076,776,415 - 77,149,277 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1072,051,638 - 72,417,027 (-)NCBICelera
Cytogenetic Map10q26NCBI
MSI2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381757,255,851 - 57,701,581 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1757,255,851 - 57,684,689 (+)EnsemblGRCh38hg38GRCh38
GRCh371755,333,212 - 55,762,050 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361752,688,930 - 53,112,298 (+)NCBINCBI36Build 36hg18NCBI36
Build 341752,689,372 - 53,065,542NCBI
Celera1751,795,383 - 52,219,094 (+)NCBICelera
Cytogenetic Map17q22NCBI
HuRef1750,694,663 - 51,117,860 (+)NCBIHuRef
CHM1_11755,398,967 - 55,822,559 (+)NCBICHM1_1
T2T-CHM13v2.01758,130,926 - 58,557,947 (+)NCBIT2T-CHM13v2.0
Msi2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391188,230,208 - 88,609,197 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1188,230,208 - 88,609,339 (-)EnsemblGRCm39 Ensembl
GRCm381188,339,382 - 88,718,306 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1188,339,382 - 88,718,513 (-)EnsemblGRCm38mm10GRCm38
MGSCv371188,152,884 - 88,403,661 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361188,155,655 - 88,406,342 (-)NCBIMGSCv36mm8
Celera1197,951,761 - 98,327,496 (-)NCBICelera
Cytogenetic Map11CNCBI
Msi2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554515,278,568 - 5,638,075 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554515,271,008 - 5,697,839 (-)NCBIChiLan1.0ChiLan1.0
MSI2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11756,194,337 - 56,621,330 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1756,194,360 - 56,613,698 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01751,335,550 - 51,763,572 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
MSI2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1932,017,951 - 32,409,457 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha931,257,115 - 31,645,725 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0932,825,471 - 33,214,836 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl932,825,157 - 33,214,400 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1931,611,023 - 31,999,606 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0931,894,294 - 32,282,733 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0931,977,953 - 32,366,683 (+)NCBIUU_Cfam_GSD_1.0
Msi2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560231,370,729 - 31,737,475 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364905,342,512 - 5,704,709 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049364905,337,571 - 5,704,331 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MSI2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1233,537,196 - 33,975,548 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11233,537,163 - 33,974,845 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21234,609,449 - 34,637,812 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MSI2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11635,711,443 - 36,141,949 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1635,719,075 - 36,141,925 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660776,529,836 - 6,961,096 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Msi2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479512,230,802 - 12,596,419 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479512,230,756 - 12,603,360 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Msi2
1092 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:210
Count of miRNA genes:151
Interacting mature miRNAs:181
Transcripts:ENSRNOT00000003164, ENSRNOT00000034921, ENSRNOT00000071623
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101448701189062041Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
1554317Bmd4Bone mineral density QTL 49.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)101981604299406971Rat
724556Pur2Proteinuria QTL 25.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)102242750090627625Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
631542Bp82Blood pressure QTL 826.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102652195798952741Rat
724527Bp148Blood pressure QTL 1480.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102845313673453136Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)1029299504107211142Rat
631557Bp136Blood pressure QTL 1360.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)103063205375632053Rat
1576311Pia26Pristane induced arthritis QTL 26joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103122402675632053Rat
1578779Tcas10Tongue tumor susceptibility QTL 103.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)103129743976297439Rat
1576319Cia29Collagen induced arthritis QTL 29joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103397392178973921Rat
2317042Aia20Adjuvant induced arthritis QTL 203.38joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)103756507982565079Rat
2317043Aia7Adjuvant induced arthritis QTL 73.82joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)103756507982565079Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1040035094102359817Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
631552Vetf2Vascular elastic tissue fragility QTL 24.50.0002aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)104114263386142633Rat
61463Bp12Blood pressure QTL 126.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104133325886333258Rat
8552805Bw145Body weight QTL 1452.2body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)104194452678307017Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042045676104670812Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)14232313287323132Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)14232313287323132Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)14232313287323132Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)14232313287323132Rat
70198BpQTLcluster9Blood pressure QTL cluster 92.94arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)104232313287323132Rat
6893342Cm78Cardiac mass QTL 780.10.88heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)104287676679813922Rat
9589030Epfw9Epididymal fat weight QTL 919.240.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)104444169989441699Rat
7411614Foco18Food consumption QTL 180.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)104444169989441699Rat
8694173Bw149Body weight QTL 1494.380.001body mass (VT:0001259)body weight gain (CMO:0000420)104444169989441699Rat
2300218Hpcl2Hepatic cholesterol level QTL 2liver cholesterol amount (VT:0010498)liver cholesterol level (CMO:0001597)104502965095600334Rat
631547Bp87Blood pressure QTL 874.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104736947092369470Rat
2293705Bmd25Bone mineral density QTL 257.10.0001femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)104944455181709989Rat
7207811Bmd90Bone mineral density QTL 905.2femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)104944455181709989Rat
2293652Bmd22Bone mineral density QTL 224.90.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)104944455181709989Rat
2293669Bmd33Bone mineral density QTL 334.50.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)104944455181709989Rat
2293679Bmd30Bone mineral density QTL 303.50.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)104944455181709989Rat
1549846Scl47Serum cholesterol level QTL 473.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)105057470795574707Rat
70364Bp72Blood pressure QTL 72arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)105112110096121100Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1051770177107211142Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1051770177107211142Rat
1359017Hrtrt21Heart rate QTL 212.4heart pumping trait (VT:2000009)heart rate (CMO:0000002)105177294096772940Rat
631530Tls3T-lymphoma susceptibility QTL 300.0001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)105177461295600334Rat
631535Cm51Cardiac mass QTL 513heart mass (VT:0007028)calculated heart weight (CMO:0000073)105178628291669536Rat
70171Cari1Carrageenan-induced inflammation QTL 14.90.0005hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)1053797385107211142Rat
70164Bw21Body weight QTL 214.360.00005body mass (VT:0001259)body weight (CMO:0000012)105379749498952626Rat
1354608Cm33Cardiac mass QTL 332.8heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)105480929299809292Rat
2312662Slep8Serum leptin concentration QTL 80.05blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1057134272102134272Rat
2312668Scl65Serum cholesterol level QTL 650.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1057134272102134272Rat
2312672Insul15Insulin level QTL 150.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1057134272102134272Rat
1549831Bss6Bone structure and strength QTL 64lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)1057576521102576521Rat
2293698Bss43Bone structure and strength QTL 435.330.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)1059209888104209888Rat
70363Bp71Blood pressure QTL 710.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)106134527681714865Rat
2306970Anxrr22Anxiety related response QTL 225.95fear/anxiety-related behavior trait (VT:1000241)number of periods of voluntary immobility (CMO:0001045)106134527698211570Rat
6893336Cm75Cardiac mass QTL 750.10.87heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)106134527699703528Rat
1558643Cm44Cardiac mass QTL 444.80.0000368heart mass (VT:0007028)heart wet weight (CMO:0000069)106134527699703528Rat
61402Niddm3Non-insulin dependent diabetes mellitus QTL 34.58blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)106134541382564856Rat
2313103Bss80Bone structure and strength QTL 8020.0001tibia strength trait (VT:1000284)tibia midshaft endosteal cross-sectional area (CMO:0001716)1062057807107057807Rat
2313105Bss79Bone structure and strength QTL 791.80.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)1062057807107057807Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063221094107211142Rat
2298481Eau9Experimental allergic uveoretinitis QTL 90.0169uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)106592723382565079Rat
1357344Bp249Blood pressure QTL 2490.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)106674365598003205Rat
631565Hcuc4Hepatic copper content QTL 44.15liver copper amount (VT:0003065)liver copper weight to liver dry weight ratio (CMO:0001512)106694181373452992Rat
2317029Aia19Adjuvant induced arthritis QTL 192.98joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1066978955107211142Rat
2317039Aia6Adjuvant induced arthritis QTL 64.31joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)1066978955107211142Rat
2289985Bp305Blood pressure QTL 305arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)106750210873579767Rat
10450498Bp384Blood pressure QTL 3840.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1067750049107211142Rat
1642980Bp300Blood pressure QTL 300arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068383129107211142Rat
61396Bp9Blood pressure QTL 94.80.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068420376107211142Rat
2300172Bmd57Bone mineral density QTL 579.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1069738412107211142Rat
2293646Bss25Bone structure and strength QTL 2510.960.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1069738412107211142Rat
2293663Bss33Bone structure and strength QTL 339.340.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1069738412107211142Rat
6893366Bw106Body weight QTL 1060.30.47body mass (VT:0001259)body weight (CMO:0000012)1070199100107211142Rat
70193Mcs7Mammary carcinoma susceptibility QTL 72.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072224939107211142Rat
2298548Neuinf7Neuroinflammation QTL 73.4nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1072224939107211142Rat
2306793Ean5Experimental allergic neuritis QTL 54.7nervous system integrity trait (VT:0010566)IFNG-secreting splenocyte count (CMO:0002122)107255241693995749Rat
2289982Bp303Blood pressure QTL 303arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)107345299275632053Rat
724555Bp150Blood pressure QTL 1500.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)107345299278210622Rat
12880053Cm104Cardiac mass QTL 1040.009heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)107345299283463334Rat
1358188Ept9Estrogen-induced pituitary tumorigenesis QTL 93.9pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)107345313696120911Rat
2292617Ept18Estrogen-induced pituitary tumorigenesis QTL 183.9pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)107345313696120911Rat

Markers in Region
D10Rat27  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21073,452,992 - 73,453,136 (+)MAPPERmRatBN7.2
Rnor_6.01075,983,662 - 75,983,805NCBIRnor6.0
Rnor_5.01074,127,825 - 74,127,968UniSTSRnor5.0
RGSC_v3.41077,091,892 - 77,092,035UniSTSRGSC3.4
RGSC_v3.41077,091,834 - 77,092,169RGDRGSC3.4
RGSC_v3.11077,106,262 - 77,106,405RGD
Celera1072,360,629 - 72,360,772UniSTS
RH 3.4 Map10681.99RGD
RH 3.4 Map10681.99UniSTS
RH 2.0 Map10766.2RGD
SHRSP x BN Map1050.9999RGD
FHH x ACI Map1059.2399RGD
Cytogenetic Map10q26UniSTS
D10Rat26  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera1072,105,962 - 72,106,120UniSTS
RH 2.0 Map10755.6RGD
SHRSP x BN Map1051.03RGD
FHH x ACI Map1059.1999RGD
Cytogenetic Map10q26UniSTS
D10Rat193  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21073,579,541 - 73,579,767 (+)MAPPERmRatBN7.2
Rnor_6.01076,109,491 - 76,109,716NCBIRnor6.0
Rnor_5.01074,001,821 - 74,002,046UniSTSRnor5.0
RGSC_v3.41077,219,626 - 77,219,852RGDRGSC3.4
RGSC_v3.41077,219,627 - 77,219,852UniSTSRGSC3.4
RGSC_v3.11077,233,996 - 77,234,222RGD
Celera1072,485,954 - 72,486,143UniSTS
FHH x ACI Map1059.2399RGD
FHH x ACI Map1059.2399UniSTS
Cytogenetic Map10q26UniSTS
D10Got98  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21073,315,393 - 73,315,578 (+)MAPPERmRatBN7.2
Rnor_6.01075,846,098 - 75,846,282NCBIRnor6.0
Rnor_5.01074,265,259 - 74,265,443UniSTSRnor5.0
RGSC_v3.41076,953,463 - 76,953,647RGDRGSC3.4
RGSC_v3.41076,953,463 - 76,953,647UniSTSRGSC3.4
RGSC_v3.11076,967,833 - 76,968,017RGD
Celera1072,223,061 - 72,223,245UniSTS
Cytogenetic Map10q26UniSTS
D10Chm78  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21073,157,588 - 73,157,825 (+)MAPPERmRatBN7.2
Rnor_6.01075,687,669 - 75,687,905NCBIRnor6.0
Rnor_5.01074,421,425 - 74,421,662NCBIRnor5.0
RGSC_v3.41076,785,232 - 76,785,468UniSTSRGSC3.4
Celera1072,065,467 - 72,065,703UniSTS
Cytogenetic Map10q26UniSTS
D10Chm210  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21073,214,430 - 73,214,632 (+)MAPPERmRatBN7.2
Rnor_6.01075,743,537 - 75,743,738NCBIRnor6.0
Rnor_5.01074,366,267 - 74,366,468UniSTSRnor5.0
RGSC_v3.41076,850,356 - 76,850,557UniSTSRGSC3.4
Celera1072,122,298 - 72,122,499UniSTS
Cytogenetic Map10q26UniSTS
BE113957  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21073,144,567 - 73,144,718 (+)MAPPERmRatBN7.2
Rnor_6.01075,674,648 - 75,674,798NCBIRnor6.0
Rnor_5.01074,434,533 - 74,434,683UniSTSRnor5.0
RGSC_v3.41076,772,207 - 76,772,357UniSTSRGSC3.4
Celera1072,052,446 - 72,052,596UniSTS
Cytogenetic Map10q26UniSTS
RH140144  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21073,144,839 - 73,145,056 (+)MAPPERmRatBN7.2
Rnor_6.01075,674,920 - 75,675,136NCBIRnor6.0
Rnor_5.01074,434,195 - 74,434,411UniSTSRnor5.0
RGSC_v3.41076,772,479 - 76,772,695UniSTSRGSC3.4
Celera1072,052,718 - 72,052,934UniSTS
Cytogenetic Map10q26UniSTS
RH141905  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21073,621,080 - 73,621,293 (+)MAPPERmRatBN7.2
mRatBN7.21617,844,021 - 17,844,237 (+)MAPPERmRatBN7.2
Rnor_6.01619,568,001 - 19,568,216NCBIRnor6.0
Rnor_6.01076,151,073 - 76,151,285NCBIRnor6.0
Rnor_5.01619,425,028 - 19,425,243UniSTSRnor5.0
Rnor_5.01073,960,252 - 73,960,464UniSTSRnor5.0
RGSC_v3.41077,261,760 - 77,261,972UniSTSRGSC3.4
RGSC_v3.41618,331,190 - 18,331,405UniSTSRGSC3.4
Celera1618,052,386 - 18,052,601UniSTS
Celera1072,527,589 - 72,527,801UniSTS
RH 3.4 Map10681.4UniSTS
Cytogenetic Map10q26UniSTS
AI171993  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21073,570,526 - 73,570,641 (+)MAPPERmRatBN7.2
Rnor_6.01076,100,472 - 76,100,586NCBIRnor6.0
Rnor_5.01074,011,259 - 74,011,373UniSTSRnor5.0
RGSC_v3.41077,210,148 - 77,210,262UniSTSRGSC3.4
Celera1072,477,465 - 72,477,579UniSTS
Cytogenetic Map10q26UniSTS
RH133539  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera1072,177,756 - 72,177,974UniSTS
RH 3.4 Map10681.8UniSTS
Cytogenetic Map10q26UniSTS
BE108995  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21073,471,886 - 73,472,050 (+)MAPPERmRatBN7.2
Rnor_6.01076,002,532 - 76,002,695NCBIRnor6.0
Rnor_5.01074,108,914 - 74,109,077UniSTSRnor5.0
RGSC_v3.41077,110,757 - 77,110,920UniSTSRGSC3.4
Celera1072,379,433 - 72,379,596UniSTS
Cytogenetic Map10q26UniSTS
RH138628  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21073,165,381 - 73,165,584 (+)MAPPERmRatBN7.2
Rnor_6.01075,695,462 - 75,695,664NCBIRnor6.0
Rnor_5.01074,413,667 - 74,413,869UniSTSRnor5.0
RGSC_v3.41076,793,025 - 76,793,227UniSTSRGSC3.4
Celera1072,073,260 - 72,073,462UniSTS
Cytogenetic Map10q26UniSTS
RH139220  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21073,144,608 - 73,144,767 (+)MAPPERmRatBN7.2
Rnor_6.01075,674,689 - 75,674,847NCBIRnor6.0
Rnor_5.01074,434,484 - 74,434,642UniSTSRnor5.0
RGSC_v3.41076,772,248 - 76,772,406UniSTSRGSC3.4
Celera1072,052,487 - 72,052,645UniSTS
Cytogenetic Map10q26UniSTS
RH140976  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21073,537,045 - 73,537,262 (+)MAPPERmRatBN7.2
Rnor_6.01076,067,185 - 76,067,401NCBIRnor6.0
Rnor_5.01074,044,351 - 74,044,567UniSTSRnor5.0
RGSC_v3.41077,175,971 - 77,176,187UniSTSRGSC3.4
Celera1072,444,068 - 72,444,284UniSTS
Cytogenetic Map10q26UniSTS
AA800020  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21073,147,518 - 73,147,676 (+)MAPPERmRatBN7.2
Rnor_6.01075,677,599 - 75,677,756NCBIRnor6.0
Rnor_5.01074,431,575 - 74,431,732UniSTSRnor5.0
RGSC_v3.41076,775,162 - 76,775,319UniSTSRGSC3.4
Celera1072,055,397 - 72,055,554UniSTS
Cytogenetic Map10q26UniSTS
UniSTS:236694  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21073,144,299 - 73,144,693 (+)MAPPERmRatBN7.2
Rnor_6.01075,674,380 - 75,674,773NCBIRnor6.0
Rnor_5.01074,434,558 - 74,434,951UniSTSRnor5.0
RGSC_v3.41076,771,939 - 76,772,332UniSTSRGSC3.4
Celera1072,052,178 - 72,052,571UniSTS
Cytogenetic Map10q26UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 41 25 19 25 8 11 74 35 41 11 8
Low 16 16 16
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008775798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005490688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005490689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005490690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000003164   ⟹   ENSRNOP00000003164
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1073,152,321 - 73,508,666 (-)Ensembl
Rnor_6.0 Ensembl1075,681,393 - 76,039,964 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000099554   ⟹   ENSRNOP00000096507
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1073,147,380 - 73,510,157 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000106986   ⟹   ENSRNOP00000090730
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1073,148,769 - 73,322,890 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000109508   ⟹   ENSRNOP00000094550
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1073,480,608 - 73,510,157 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000112171   ⟹   ENSRNOP00000087497
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1073,147,380 - 73,510,157 (-)Ensembl
RefSeq Acc Id: XM_017597690   ⟹   XP_017453179
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21073,143,760 - 73,484,415 (-)NCBI
Rnor_6.01075,673,840 - 76,012,325 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039087659   ⟹   XP_038943587
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21073,143,760 - 73,510,199 (-)NCBI
RefSeq Acc Id: XM_039087660   ⟹   XP_038943588
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21073,143,760 - 73,510,202 (-)NCBI
RefSeq Acc Id: XM_039087661   ⟹   XP_038943589
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21073,143,760 - 73,510,202 (-)NCBI
RefSeq Acc Id: XM_039087662   ⟹   XP_038943590
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21073,143,760 - 73,510,193 (-)NCBI
RefSeq Acc Id: XM_039087663   ⟹   XP_038943591
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21073,143,760 - 73,510,195 (-)NCBI
RefSeq Acc Id: XM_039087664   ⟹   XP_038943592
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21073,143,760 - 73,510,198 (-)NCBI
RefSeq Acc Id: XM_039087665   ⟹   XP_038943593
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21073,143,760 - 73,510,191 (-)NCBI
RefSeq Acc Id: XM_039087666   ⟹   XP_038943594
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21073,143,760 - 73,510,193 (-)NCBI
RefSeq Acc Id: XM_039087667   ⟹   XP_038943595
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21073,143,760 - 73,510,193 (-)NCBI
RefSeq Acc Id: XM_039087668   ⟹   XP_038943596
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21073,143,760 - 73,510,203 (-)NCBI
RefSeq Acc Id: XM_039087669   ⟹   XP_038943597
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21073,143,760 - 73,510,198 (-)NCBI
RefSeq Acc Id: XM_039087671   ⟹   XP_038943599
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21073,153,141 - 73,510,201 (-)NCBI
RefSeq Acc Id: XM_039087672   ⟹   XP_038943600
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21073,143,760 - 73,510,191 (-)NCBI
RefSeq Acc Id: XM_039087673   ⟹   XP_038943601
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21073,153,138 - 73,510,194 (-)NCBI
RefSeq Acc Id: XM_039087674   ⟹   XP_038943602
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21073,143,760 - 73,350,168 (-)NCBI
RefSeq Acc Id: XM_039087675   ⟹   XP_038943603
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21073,172,398 - 73,510,197 (-)NCBI
RefSeq Acc Id: XM_039087676   ⟹   XP_038943604
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21073,143,760 - 73,325,617 (-)NCBI
RefSeq Acc Id: XM_039087677   ⟹   XP_038943605
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21073,143,760 - 73,295,322 (-)NCBI
RefSeq Acc Id: XM_039087678   ⟹   XP_038943606
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21073,143,760 - 73,510,566 (-)NCBI
RefSeq Acc Id: XR_005490688
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21073,143,760 - 73,510,202 (-)NCBI
RefSeq Acc Id: XR_005490689
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21073,143,760 - 73,510,203 (-)NCBI
RefSeq Acc Id: XR_005490690
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21073,143,760 - 73,510,196 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_017453179   ⟸   XM_017597690
- Peptide Label: isoform X15
- Sequence:
RefSeq Acc Id: ENSRNOP00000003164   ⟸   ENSRNOT00000003164
RefSeq Acc Id: XP_038943606   ⟸   XM_039087678
- Peptide Label: isoform X17
RefSeq Acc Id: XP_038943596   ⟸   XM_039087668
- Peptide Label: isoform X8
- UniProtKB: A0A8I6GG20 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038943589   ⟸   XM_039087661
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038943588   ⟸   XM_039087660
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038943587   ⟸   XM_039087659
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038943597   ⟸   XM_039087669
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038943592   ⟸   XM_039087664
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038943591   ⟸   XM_039087663
- Peptide Label: isoform X4
- UniProtKB: A0A8I6AQW7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038943595   ⟸   XM_039087667
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038943594   ⟸   XM_039087666
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038943590   ⟸   XM_039087662
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038943600   ⟸   XM_039087672
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038943593   ⟸   XM_039087665
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038943602   ⟸   XM_039087674
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038943604   ⟸   XM_039087676
- Peptide Label: isoform X16
RefSeq Acc Id: XP_038943605   ⟸   XM_039087677
- Peptide Label: isoform X16
RefSeq Acc Id: XP_038943601   ⟸   XM_039087673
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038943599   ⟸   XM_039087671
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038943603   ⟸   XM_039087675
- Peptide Label: isoform X14
RefSeq Acc Id: ENSRNOP00000094550   ⟸   ENSRNOT00000109508
RefSeq Acc Id: ENSRNOP00000096507   ⟸   ENSRNOT00000099554
RefSeq Acc Id: ENSRNOP00000090730   ⟸   ENSRNOT00000106986
RefSeq Acc Id: ENSRNOP00000087497   ⟸   ENSRNOT00000112171
Protein Domains
RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LWE6-F1-model_v2 AlphaFold F1LWE6 1-278 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1560397 AgrOrtholog
BioCyc Gene G2FUF-23711 BioCyc
Ensembl Genes ENSRNOG00000025338 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000003164.8 UniProtKB/TrEMBL
  ENSRNOP00000087497 ENTREZGENE
  ENSRNOP00000087497.1 UniProtKB/TrEMBL
  ENSRNOP00000090730 ENTREZGENE
  ENSRNOP00000090730.1 UniProtKB/TrEMBL
  ENSRNOP00000094550.1 UniProtKB/TrEMBL
  ENSRNOP00000096507 ENTREZGENE
  ENSRNOP00000096507.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000003164.9 UniProtKB/TrEMBL
  ENSRNOT00000099554 ENTREZGENE
  ENSRNOT00000099554.1 UniProtKB/TrEMBL
  ENSRNOT00000106986 ENTREZGENE
  ENSRNOT00000106986.1 UniProtKB/TrEMBL
  ENSRNOT00000109508.1 UniProtKB/TrEMBL
  ENSRNOT00000112171 ENTREZGENE
  ENSRNOT00000112171.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro MSI_RRM1 UniProtKB/TrEMBL
  MSI_RRM2 UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
NCBI Gene 360596 ENTREZGENE
PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG 2 UniProtKB/TrEMBL
  RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/TrEMBL
PhenoGen Msi2 PhenoGen
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A8I6AAP6_RAT UniProtKB/TrEMBL
  A0A8I6AQW7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GG20 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GL82_RAT UniProtKB/TrEMBL
  F1LWE6_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-01-02 Msi2  musashi RNA-binding protein 2  Msi2  Musashi homolog 2 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-28 Msi2  Musashi homolog 2 (Drosophila)  RGD1560397_predicted  similar to RNA-binding protein Musashi2-S (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1560397_predicted  similar to RNA-binding protein Musashi2-S (predicted)  LOC360596  similar to RNA-binding protein Musashi2-S  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC360596  similar to RNA-binding protein Musashi2-S      Symbol and Name status set to provisional 70820 PROVISIONAL