Rogdi (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCr8 | 10 | 11,074,288 - 11,078,907 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 10 | 10,567,834 - 10,572,453 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 10 | 10,567,834 - 10,572,452 (+) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 10 | 15,275,819 - 15,280,438 (+) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 10 | 14,764,638 - 14,769,257 (+) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 10 | 10,433,931 - 10,438,567 (+) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 10 | 10,761,477 - 10,766,096 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 10 | 10,761,477 - 10,766,095 (+) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 10 | 9,528,490 - 9,533,109 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 10 | 10,683,729 - 10,688,348 (+) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | Celera | 10 | 9,531,610 - 9,536,229 (+) | NCBI | | Celera | | | Cytogenetic Map | 10 | q12 | NCBI | | | | |
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ROGDI (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCh38 | 16 | 4,796,968 - 4,802,633 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 16 | 4,796,968 - 4,802,880 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 16 | 4,846,969 - 4,852,634 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 16 | 4,786,970 - 4,792,675 (-) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Celera | 16 | 5,055,739 - 5,061,444 (-) | NCBI | | Celera | | | Cytogenetic Map | 16 | p13.3 | NCBI | | | | | HuRef | 16 | 4,813,161 - 4,819,149 (-) | NCBI | | HuRef | | | CHM1_1 | 16 | 4,847,809 - 4,853,797 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 16 | 4,826,450 - 4,832,187 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Rogdi (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCm39 | 16 | 4,826,593 - 4,831,438 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 16 | 4,826,594 - 4,831,417 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 16 | 5,008,729 - 5,013,574 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 16 | 5,008,730 - 5,013,553 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 16 | 5,008,822 - 5,013,646 (-) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 16 | 4,924,066 - 4,928,840 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 16 | 5,640,103 - 5,644,927 (-) | NCBI | | Celera | | | Cytogenetic Map | 16 | A1 | NCBI | | | | | cM Map | 16 | 2.49 | NCBI | | | | |
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Rogdi (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
ChiLan1.0 Ensembl | NW_004955442 | 12,694,197 - 12,700,181 (+) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955442 | 12,694,197 - 12,700,181 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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ROGDI (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
NHGRI_mPanPan1-v2 | 18 | 5,325,112 - 5,331,145 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 16 | 9,115,264 - 9,121,257 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 16 | 3,721,063 - 3,727,056 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 16 | 4,886,553 - 4,892,611 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 16 | 4,887,051 - 4,892,607 (-) | Ensembl | panpan1.1 | | panPan2 | |
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ROGDI (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 6 | 36,618,670 - 36,624,533 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 6 | 36,491,561 - 36,624,532 (+) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 6 | 38,010,765 - 38,016,786 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 6 | 36,821,485 - 36,827,506 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 6 | 36,820,987 - 36,827,503 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 6 | 36,615,541 - 36,621,550 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 6 | 36,508,424 - 36,514,446 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 6 | 36,910,640 - 36,916,661 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Rogdi (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
HiC_Itri_2 | NW_024409344 | 106,910,628 - 106,916,187 (-) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936530 | 4,753,751 - 4,761,695 (-) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936530 | 4,756,069 - 4,761,484 (-) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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ROGDI (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
Sscrofa11.1 Ensembl | 3 | 37,591,815 - 37,602,112 (+) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 3 | 37,592,982 - 37,600,004 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 3 | 38,665,099 - 38,671,065 (+) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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ROGDI (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
ChlSab1.1 | 5 | 4,466,954 - 4,472,967 (-) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 5 | 4,466,824 - 4,472,780 (-) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666068 | 26,186,555 - 26,192,558 (+) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Rogdi (Heterocephalus glaber - naked mole-rat) |
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