Loricrin (loricrin cornified envelope precursor protein) - Rat Genome Database

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Gene: Loricrin (loricrin cornified envelope precursor protein) Rattus norvegicus
Analyze
Symbol: Loricrin
Name: loricrin cornified envelope precursor protein
RGD ID: 1559993
Description: Predicted to be a structural constituent of cytoskeleton and structural constituent of skin epidermis. Predicted to be involved in keratinocyte differentiation and peptide cross-linking. Predicted to be located in cytoplasm and cytoplasmic side of plasma membrane. Predicted to be active in cornified envelope. Orthologous to human LORICRIN (loricrin cornified envelope precursor protein); INTERACTS WITH bisphenol A; Monobutylphthalate; 1,2-dimethylhydrazine (ortholog).
Type: protein-coding
RefSeq Status: INFERRED
Previously known as: LOC502541; Lor; RGD1559993
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82180,253,674 - 180,256,572 (-)NCBIGRCr8
mRatBN7.22177,558,062 - 177,560,960 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2177,558,252 - 177,559,807 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2185,120,471 - 185,123,369 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02183,102,235 - 183,105,133 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02177,763,534 - 177,766,432 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02191,984,455 - 191,990,713 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2191,984,773 - 191,986,170 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02212,877,186 - 212,882,693 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42184,953,538 - 184,955,283 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2172,680,893 - 172,687,160 (+)NCBICelera
Cytogenetic Map2q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:2190691   PMID:7543090   PMID:10908733   PMID:11038185   PMID:11698679   PMID:14673151   PMID:21930775  


Genomics

Comparative Map Data
Loricrin
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82180,253,674 - 180,256,572 (-)NCBIGRCr8
mRatBN7.22177,558,062 - 177,560,960 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2177,558,252 - 177,559,807 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2185,120,471 - 185,123,369 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02183,102,235 - 183,105,133 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02177,763,534 - 177,766,432 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02191,984,455 - 191,990,713 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2191,984,773 - 191,986,170 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02212,877,186 - 212,882,693 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42184,953,538 - 184,955,283 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2172,680,893 - 172,687,160 (+)NCBICelera
Cytogenetic Map2q34NCBI
LORICRIN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381153,259,687 - 153,262,124 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1153,259,687 - 153,262,124 (+)EnsemblGRCh38hg38GRCh38
GRCh371153,232,163 - 153,234,600 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361151,498,803 - 151,501,224 (+)NCBINCBI36Build 36hg18NCBI36
Build 341150,046,475 - 150,047,671NCBI
Celera1126,303,436 - 126,305,857 (+)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1124,595,566 - 124,597,999 (+)NCBIHuRef
CHM1_11154,627,959 - 154,630,380 (+)NCBICHM1_1
T2T-CHM13v2.01152,396,903 - 152,399,352 (+)NCBIT2T-CHM13v2.0
Loricrin
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39391,987,578 - 91,990,447 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl391,987,578 - 91,990,449 (-)EnsemblGRCm39 Ensembl
GRCm38392,080,271 - 92,083,142 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl392,080,271 - 92,083,142 (-)EnsemblGRCm38mm10GRCm38
MGSCv37391,884,193 - 91,887,064 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36392,166,209 - 92,169,067 (-)NCBIMGSCv36mm8
Celera392,123,831 - 92,126,702 (-)NCBICelera
Cytogenetic Map3F1NCBI
cM Map340.14NCBI
Loricrin
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955592167,139 - 169,638 (-)NCBIChiLan1.0ChiLan1.0
LORICRIN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2196,580,323 - 96,581,568 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1196,315,995 - 96,317,311 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01128,607,506 - 128,608,808 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
LORICRIN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11761,994,297 - 61,995,591 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1761,460,176 - 61,463,150 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01763,144,507 - 63,147,606 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11761,893,634 - 61,896,464 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01761,944,715 - 61,947,725 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01762,703,311 - 62,706,427 (+)NCBIUU_Cfam_GSD_1.0
LORICRIN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl496,304,070 - 96,305,110 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1496,303,835 - 96,308,016 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24105,206,034 - 105,209,187 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LORICRIN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12010,494,570 - 10,497,944 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660389,966,739 - 9,968,274 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Loricrin
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624885675,955 - 677,391 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Loricrin
2 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358356Srcrt1Stress Responsive Cort QTL13.66blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)2163997722225110681Rat
1578648Bss11Bone structure and strength QTL 114.7femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)2169358774214358774Rat
1331734Bp204Blood pressure QTL 2043.61192arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2170656145239614549Rat
631566Bp90Blood pressure QTL 900.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2149957381221199885Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)244537979205135428Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)267845370229470703Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)283465462229820014Rat
1298076Bp166Blood pressure QTL 1660.0009arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2138595962205135428Rat
1581576Pur7Proteinuria QTL 70.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)280396178220931218Rat
1581578Cm49Cardiac mass QTL 494.90.01heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2145807215220931416Rat
631198Cm22Cardiac mass QTL 224.30.0008heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)278269809208420281Rat
1554319Bmd2Bone mineral density QTL 213.40.0001lumbar vertebra area (VT:0010570)lumbar vertebra cross-sectional area (CMO:0001689)2122597372215234002Rat
12879836Kidm61Kidney mass QTL 610.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2154723085199723085Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)280396178220931218Rat
10043136Iddm54Insulin dependent diabetes mellitus QTL 543.40.0001blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)2145807215190807215Rat
12879837Am2Aortic mass QTL 20.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)2154723085199723085Rat
10043139Iddm55Insulin dependent diabetes mellitus QTL 553.10.0001blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)2150313808195313808Rat
12879838Cm86Cardiac mass QTL 860.002heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2154723085199723085Rat
1302793Bw16Body weight QTL 1650.0001body mass (VT:0001259)body weight (CMO:0000012)2159440891205135267Rat
12879839Cm85Cardiac mass QTL 850.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)2154723085199723085Rat
1549833Bp257Blood pressure QTL 2570.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2170652929215652929Rat
1358900Bw48Body weight QTL 484.88body mass (VT:0001259)body weight (CMO:0000012)2159440891220931218Rat
4889834Pur24Proteinuria QTL 245.80.014urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)2171994826205135428Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2143565208188565208Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)24265106205135428Rat
12879840Bw179Body weight QTL 1790.005body mass (VT:0001259)body weight (CMO:0000012)2154723085199723085Rat
1581502Esta3Estrogen-induced thymic atrophy QTL 3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2139067258192287892Rat
1359032Hrtrt18Heart rate QTL 18heart pumping trait (VT:2000009)heart rate (CMO:0000002)2159440760195313808Rat
2301966Bp322Blood pressure QTL 3223.58arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2144882354205135428Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)267845182205135428Rat
1357991Ael2Aortic elastin QTL 24.20.000071aorta elastin amount (VT:0003905)aortic elastin2169227906214227906Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)283400752223709938Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)244537979205135428Rat
1578671Bmd10Bone mineral density QTL 105.4femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)2175931416220931416Rat
1359022Ppulsi1Prepulse inhibition QTL 13.63prepulse inhibition trait (VT:0003088)acoustic startle response measurement (CMO:0001519)2139067258184067258Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2151869660251712708Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)280396034220931416Rat
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)278269809205135428Rat
8662843Vetf9Vascular elastic tissue fragility QTL 92.05thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2159440760228950743Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2143344967251712708Rat
71113Cari2Carrageenan-induced inflammation QTL 22.70.009hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)2143746578205135428Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2143344967251712708Rat
634308Sach6Saccharin preference QTL 64.9taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)2114384617215381366Rat
1598805Memor8Memory QTL 83exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2150096616195096616Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
724568Uae13Urinary albumin excretion QTL 134.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)2145306936212705578Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
1300165Rf9Renal function QTL 93.28kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)2113746222205135428Rat
61401Niddm2Non-insulin dependent diabetes mellitus QTL 24.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2147287892192287892Rat
631507Bp105Blood pressure QTL 1050.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2114384617215381366Rat
1641925Alcrsp2Alcohol response QTL 2response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2151869660223841096Rat
1354609Niddm62Non-insulin dependent diabetes mellitus QTL 624.720.000006insulin secretion trait (VT:0003564)plasma insulin level (CMO:0000342)2117415288205135428Rat
1598833Bp295Blood pressure QTL 2953.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2150096616195096616Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)283465462225110681Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)247856345205135428Rat
631522Bp74Blood pressure QTL 740.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2175008837220008837Rat
7488927Bp365Blood pressure QTL 3650.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2165453811210453811Rat
7488925Bp364Blood pressure QTL 3640.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2163253030208253030Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)244537979184731399Rat
2306901Bp337Blood pressure QTL 3370.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2166372086229820014Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)276328396209350714Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
6 1 16 92 24 27 8 6 8 6 59 33 80 11 39 19

Sequence


Ensembl Acc Id: ENSRNOT00000090155   ⟹   ENSRNOP00000070322
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2177,558,252 - 177,559,807 (-)Ensembl
Rnor_6.0 Ensembl2191,984,773 - 191,986,170 (-)Ensembl
RefSeq Acc Id: NM_001399507   ⟹   NP_001386436
RefSeq Status: INFERRED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82180,253,674 - 180,256,572 (-)NCBI
mRatBN7.22177,558,062 - 177,560,960 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001386436 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000070322
  ENSRNOP00000070322.2
Ensembl Acc Id: ENSRNOP00000070322   ⟸   ENSRNOT00000090155
RefSeq Acc Id: NP_001386436   ⟸   NM_001399507

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JXL7-F1-model_v2 AlphaFold A0A0G2JXL7 1-450 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1559993 AgrOrtholog
BioCyc Gene G2FUF-52308 BioCyc
Ensembl Genes ENSRNOG00000059604 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000090155 ENTREZGENE
  ENSRNOT00000090155.2 UniProtKB/TrEMBL
NCBI Gene 502541 ENTREZGENE
PhenoGen Loricrin PhenoGen
RatGTEx ENSRNOG00000059604 RatGTEx
UniProt A0A0G2JXL7_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-12-12 Loricrin  loricrin cornified envelope precursor protein  Lor  loricrin cornified envelope precursor protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2019-11-11 Lor  loricrin cornified envelope precursor protein  Lor  loricrin  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-28 Lor  loricrin  RGD1559993_predicted  RGD1559993 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1559993_predicted  RGD1559993 (predicted)  LOC502541  LOC502541  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC502541  LOC502541      Symbol and Name status set to provisional 70820 PROVISIONAL