Psd3 (pleckstrin and Sec7 domain containing 3) - Rat Genome Database

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Gene: Psd3 (pleckstrin and Sec7 domain containing 3) Rattus norvegicus
Analyze
Symbol: Psd3
Name: pleckstrin and Sec7 domain containing 3
RGD ID: 1559968
Description: Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in regulation of ARF protein signal transduction. Predicted to be located in membrane. Predicted to be active in glutamatergic synapse; postsynapse; and ruffle membrane. Orthologous to human PSD3 (pleckstrin and Sec7 domain containing 3); PARTICIPATES IN endocytosis pathway; INTERACTS WITH (+)-schisandrin B; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC306380; PH and SEC7 domain-containing protein 3; RGD1559968; similar to ADP-ribosylation factor guanine nucleotide factor 6 isoform a
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81626,238,595 - 26,802,535 (+)NCBIGRCr8
mRatBN7.21621,465,643 - 22,035,846 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1621,465,639 - 22,034,547 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01623,212,165 - 23,789,414 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1623,447,366 - 23,781,604 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01623,099,943 - 23,673,970 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41623,194,137 - 23,662,010 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1621,624,379 - 22,176,442 (+)NCBICelera
Cytogenetic Map16p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(-)-demecolcine  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,1-dichloroethene  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
caffeine  (ISO)
camptothecin  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
cisplatin  (ISO)
cobalt dichloride  (EXP)
coenzyme Q10  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
cytarabine  (ISO)
diarsenic trioxide  (ISO)
diethylstilbestrol  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
endosulfan  (EXP)
ethanol  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
glyphosate  (EXP)
hydralazine  (ISO)
indole-3-methanol  (EXP)
lipopolysaccharide  (ISO)
manganese(II) chloride  (EXP)
melphalan  (ISO)
methamphetamine  (ISO)
methoxychlor  (EXP)
mocetinostat  (ISO)
N,N-diethyl-m-toluamide  (EXP)
N-nitrosodiethylamine  (EXP)
nickel atom  (ISO)
nickel sulfate  (ISO)
paracetamol  (ISO)
PCB138  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
permethrin  (EXP)
phenylmercury acetate  (ISO)
progesterone  (ISO)
quercetin  (ISO)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sotorasib  (ISO)
sunitinib  (ISO)
tacedinaline  (ISO)
tamoxifen  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (EXP,ISO)
trametinib  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (EXP,ISO)
valproic acid  (EXP,ISO)
vincristine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:16707115   PMID:23603394   PMID:25931508  


Genomics

Comparative Map Data
Psd3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81626,238,595 - 26,802,535 (+)NCBIGRCr8
mRatBN7.21621,465,643 - 22,035,846 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1621,465,639 - 22,034,547 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01623,212,165 - 23,789,414 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1623,447,366 - 23,781,604 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01623,099,943 - 23,673,970 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41623,194,137 - 23,662,010 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1621,624,379 - 22,176,442 (+)NCBICelera
Cytogenetic Map16p14NCBI
PSD3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38818,527,303 - 19,084,805 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl818,527,303 - 19,084,730 (-)EnsemblGRCh38hg38GRCh38
GRCh37818,384,813 - 18,871,213 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36818,429,093 - 18,915,476 (-)NCBINCBI36Build 36hg18NCBI36
Celera817,351,147 - 17,835,744 (-)NCBICelera
Cytogenetic Map8p22NCBI
HuRef816,929,317 - 17,412,683 (-)NCBIHuRef
CHM1_1818,586,292 - 19,072,714 (-)NCBICHM1_1
T2T-CHM13v2.0818,794,850 - 19,349,609 (-)NCBIT2T-CHM13v2.0
Psd3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39868,141,728 - 68,664,740 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl868,141,734 - 68,664,679 (-)EnsemblGRCm39 Ensembl
GRCm38867,689,082 - 68,212,063 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl867,689,082 - 68,212,027 (-)EnsemblGRCm38mm10GRCm38
MGSCv37870,212,981 - 70,498,473 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36870,625,036 - 70,903,563 (-)NCBIMGSCv36mm8
Celera870,232,989 - 70,519,004 (-)NCBICelera
Cytogenetic Map8B3.2- B3.3NCBI
cM Map833.46NCBI
Psd3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540342,451,485 - 42,932,948 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540342,442,708 - 42,943,314 (-)NCBIChiLan1.0ChiLan1.0
PSD3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2737,011,500 - 37,725,363 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1812,736,722 - 13,464,979 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0817,758,287 - 18,308,876 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1814,706,850 - 15,259,170 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl814,714,575 - 15,258,823 (-)Ensemblpanpan1.1panPan2
PSD3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11621,328,491 - 21,921,378 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1621,336,642 - 21,921,460 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1621,835,321 - 22,427,295 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01623,062,751 - 23,661,573 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1623,062,752 - 23,661,465 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11621,428,758 - 21,945,684 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01622,014,238 - 22,733,274 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01622,064,528 - 22,658,581 (-)NCBIUU_Cfam_GSD_1.0
Psd3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494315,250,693 - 15,615,297 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365552,963,963 - 3,284,619 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365552,955,982 - 3,253,064 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PSD3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1712,758,536 - 13,264,174 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11712,645,743 - 13,267,176 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21713,573,794 - 14,045,089 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PSD3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1816,623,640 - 17,171,820 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl816,628,787 - 17,098,824 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605225,081,275 - 25,637,066 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Psd3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475814,483,447 - 14,793,268 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475814,474,626 - 14,965,281 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Psd3
4203 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:535
Count of miRNA genes:130
Interacting mature miRNAs:144
Transcripts:ENSRNOT00000018667, ENSRNOT00000041994, ENSRNOT00000064644, ENSRNOT00000066255, ENSRNOT00000067886, ENSRNOT00000068177, ENSRNOT00000068629
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631561Hcuc2Hepatic copper content QTL 22.8liver copper amount (VT:0003065)liver total copper weight (CMO:0001507)16139533949Rat
1582235Insul8Insulin level QTL 83.30.0063blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)16126727669Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)161900443575226532Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133418960Rat
2302057Pia29Pristane induced arthritis QTL 293.60.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)162173597566735975Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139533930Rat
2302380Slep6Serum leptin concentration QTL 63.36blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)16132139025Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16422760946975965Rat
9590151Scort8Serum corticosterone level QTL 88.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)16130836262Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16144977551Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760949227609Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16422760948972724Rat
631830Alc7Alcohol consumption QTL 72.9consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16126727669Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16144588133Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)16422760943025077Rat
1600369Hcas8Hepatocarcinoma susceptibility QTL 8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)16122477621Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760960252231Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139533930Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
2306902Bp339Blood pressure QTL 3390.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16338015043025077Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
634355Rends4Renal damage susceptibility QTL 40.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)16126727669Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683223646053497Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16143534949Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat

Markers in Region
D16Rat26  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21621,982,715 - 21,982,923 (+)MAPPERmRatBN7.2
Rnor_6.01623,736,122 - 23,736,329NCBIRnor6.0
Rnor_5.01623,620,683 - 23,620,890UniSTSRnor5.0
RGSC_v3.41623,614,977 - 23,615,185RGDRGSC3.4
RGSC_v3.41623,614,978 - 23,615,185UniSTSRGSC3.4
RGSC_v3.11623,614,976 - 23,615,183RGD
Celera1622,123,843 - 22,124,050UniSTS
RH 3.4 Map16265.9UniSTS
RH 3.4 Map16265.9RGD
RH 2.0 Map16307.6RGD
FHH x ACI Map1613.2499RGD
Cytogenetic Map16p14UniSTS
D16Got25  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21621,631,643 - 21,631,798 (+)MAPPERmRatBN7.2
Rnor_6.01623,376,572 - 23,376,726NCBIRnor6.0
Rnor_5.01623,260,780 - 23,260,934UniSTSRnor5.0
RGSC_v3.41623,254,573 - 23,254,728RGDRGSC3.4
RGSC_v3.41623,254,574 - 23,254,728UniSTSRGSC3.4
RGSC_v3.11623,254,572 - 23,254,726RGD
Celera1621,783,846 - 21,784,002UniSTS
RH 3.4 Map16258.0UniSTS
RH 3.4 Map16258.0RGD
RH 2.0 Map16316.3RGD
Cytogenetic Map16p14UniSTS
BE114486  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21621,943,496 - 21,943,652 (+)MAPPERmRatBN7.2
Rnor_6.01623,696,903 - 23,697,058NCBIRnor6.0
Rnor_5.01623,581,464 - 23,581,619UniSTSRnor5.0
RGSC_v3.41623,574,592 - 23,574,747UniSTSRGSC3.4
Celera1622,084,614 - 22,084,769UniSTS
RH 3.4 Map16268.1UniSTS
Cytogenetic Map16p14UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 12 18 8 10 8 8 8 64 18 30 8 8
Low 3 31 39 33 9 33 2 10 17 11 3
Below cutoff 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001419764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC099122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000041994   ⟹   ENSRNOP00000042590
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1621,812,078 - 22,034,547 (+)Ensembl
Rnor_6.0 Ensembl1623,553,647 - 23,781,604 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000067886   ⟹   ENSRNOP00000063495
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1623,668,595 - 23,759,634 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000068177   ⟹   ENSRNOP00000062924
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1621,742,634 - 22,034,547 (+)Ensembl
Rnor_6.0 Ensembl1623,475,351 - 23,781,604 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000068629   ⟹   ENSRNOP00000059423
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1621,703,079 - 22,034,547 (+)Ensembl
Rnor_6.0 Ensembl1623,447,366 - 23,781,604 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000093876   ⟹   ENSRNOP00000078222
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1621,465,639 - 22,034,547 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000105283   ⟹   ENSRNOP00000097864
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1621,807,886 - 22,034,547 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000112213   ⟹   ENSRNOP00000087887
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1621,729,950 - 22,034,547 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000113025   ⟹   ENSRNOP00000078224
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1621,638,934 - 22,034,547 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000117420   ⟹   ENSRNOP00000096277
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1621,756,834 - 22,034,547 (+)Ensembl
RefSeq Acc Id: NM_001419764   ⟹   NP_001406693
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81626,405,924 - 26,802,535 (+)NCBI
mRatBN7.21621,639,230 - 22,035,846 (+)NCBI
RefSeq Acc Id: XM_006253039   ⟹   XP_006253101
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81626,238,732 - 26,802,530 (+)NCBI
mRatBN7.21621,472,063 - 22,035,846 (+)NCBI
Rnor_6.01623,212,165 - 23,789,414 (+)NCBI
Rnor_5.01623,099,943 - 23,673,970 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006253047   ⟹   XP_006253109
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81626,567,764 - 26,802,530 (+)NCBI
mRatBN7.21621,808,910 - 22,035,846 (+)NCBI
Rnor_6.01623,552,742 - 23,789,414 (+)NCBI
Rnor_5.01623,099,943 - 23,673,970 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006253053   ⟹   XP_006253115
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81626,680,480 - 26,802,530 (+)NCBI
mRatBN7.21621,913,789 - 22,035,846 (+)NCBI
Rnor_6.01623,668,351 - 23,789,414 (+)NCBI
Rnor_5.01623,099,943 - 23,673,970 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039094954   ⟹   XP_038950882
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81626,496,655 - 26,802,530 (+)NCBI
mRatBN7.21621,730,112 - 22,035,846 (+)NCBI
RefSeq Acc Id: XM_039094958   ⟹   XP_038950886
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81626,439,611 - 26,802,530 (+)NCBI
mRatBN7.21621,672,852 - 22,035,846 (+)NCBI
RefSeq Acc Id: XM_039094959   ⟹   XP_038950887
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81626,496,629 - 26,802,530 (+)NCBI
mRatBN7.21621,729,932 - 22,035,846 (+)NCBI
RefSeq Acc Id: XM_039094961   ⟹   XP_038950889
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81626,238,595 - 26,635,124 (+)NCBI
mRatBN7.21621,472,049 - 21,868,448 (+)NCBI
RefSeq Acc Id: XM_063275381   ⟹   XP_063131451
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81626,416,550 - 26,802,530 (+)NCBI
RefSeq Acc Id: XM_063275382   ⟹   XP_063131452
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81626,416,550 - 26,802,530 (+)NCBI
RefSeq Acc Id: XM_063275383   ⟹   XP_063131453
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81626,238,732 - 26,802,530 (+)NCBI
RefSeq Acc Id: XM_063275384   ⟹   XP_063131454
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81626,403,326 - 26,802,530 (+)NCBI
RefSeq Acc Id: XM_063275386   ⟹   XP_063131456
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81626,416,550 - 26,634,983 (+)NCBI
RefSeq Acc Id: XM_063275387   ⟹   XP_063131457
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81626,416,550 - 26,633,828 (+)NCBI
RefSeq Acc Id: XM_063275388   ⟹   XP_063131458
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81626,416,550 - 26,633,828 (+)NCBI
RefSeq Acc Id: XM_063275389   ⟹   XP_063131459
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81626,416,550 - 26,634,983 (+)NCBI
RefSeq Acc Id: XM_063275390   ⟹   XP_063131460
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81626,416,550 - 26,635,124 (+)NCBI
RefSeq Acc Id: XM_063275391   ⟹   XP_063131461
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81626,416,550 - 26,635,124 (+)NCBI
RefSeq Acc Id: XM_063275392   ⟹   XP_063131462
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81626,403,208 - 26,635,124 (+)NCBI
RefSeq Acc Id: XM_063275393   ⟹   XP_063131463
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81626,403,188 - 26,635,124 (+)NCBI
RefSeq Acc Id: XM_063275394   ⟹   XP_063131464
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81626,496,635 - 26,635,124 (+)NCBI
RefSeq Acc Id: XM_063275395   ⟹   XP_063131465
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81626,567,764 - 26,802,530 (+)NCBI
RefSeq Acc Id: XM_063275396   ⟹   XP_063131466
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81626,522,443 - 26,802,530 (+)NCBI
RefSeq Acc Id: XM_063275397   ⟹   XP_063131467
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81626,524,366 - 26,802,530 (+)NCBI
RefSeq Acc Id: XM_063275398   ⟹   XP_063131468
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81626,514,390 - 26,802,530 (+)NCBI
RefSeq Acc Id: XM_063275399   ⟹   XP_063131469
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81626,522,425 - 26,802,530 (+)NCBI
RefSeq Acc Id: XM_063275401   ⟹   XP_063131471
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81626,605,773 - 26,802,530 (+)NCBI
RefSeq Acc Id: XM_063275402   ⟹   XP_063131472
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81626,584,486 - 26,802,530 (+)NCBI
RefSeq Acc Id: XM_063275403   ⟹   XP_063131473
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81626,567,764 - 26,633,828 (+)NCBI
RefSeq Acc Id: XM_063275404   ⟹   XP_063131474
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81626,567,764 - 26,635,124 (+)NCBI
RefSeq Acc Id: XM_063275405   ⟹   XP_063131475
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81626,567,764 - 26,635,124 (+)NCBI
RefSeq Acc Id: XM_063275406   ⟹   XP_063131476
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81626,524,363 - 26,635,124 (+)NCBI
RefSeq Acc Id: XR_010058293
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81626,416,550 - 26,724,203 (+)NCBI
RefSeq Acc Id: XR_010058294
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81626,416,550 - 26,634,983 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001406693 (Get FASTA)   NCBI Sequence Viewer  
  XP_006253101 (Get FASTA)   NCBI Sequence Viewer  
  XP_006253109 (Get FASTA)   NCBI Sequence Viewer  
  XP_006253115 (Get FASTA)   NCBI Sequence Viewer  
  XP_038950882 (Get FASTA)   NCBI Sequence Viewer  
  XP_038950886 (Get FASTA)   NCBI Sequence Viewer  
  XP_038950887 (Get FASTA)   NCBI Sequence Viewer  
  XP_038950889 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131451 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131452 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131453 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131454 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131456 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131457 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131458 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131459 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131460 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131461 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131462 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131463 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131464 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131465 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131466 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131467 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131468 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131469 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131471 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131472 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131473 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131474 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131475 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131476 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL75944 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000042590.4
  ENSRNOP00000059423.4
  ENSRNOP00000062924.4
  ENSRNOP00000078222.1
  ENSRNOP00000078224.1
  ENSRNOP00000087887.1
  ENSRNOP00000096277.1
  ENSRNOP00000097864.1
RefSeq Acc Id: XP_006253101   ⟸   XM_006253039
- Peptide Label: isoform X3
- UniProtKB: A0A8I5Y8H6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006253109   ⟸   XM_006253047
- Peptide Label: isoform X16
- UniProtKB: A0A8I6ANS5 (UniProtKB/TrEMBL),   D4A404 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006253115   ⟸   XM_006253053
- Peptide Label: isoform X22
- Sequence:
RefSeq Acc Id: ENSRNOP00000063495   ⟸   ENSRNOT00000067886
RefSeq Acc Id: ENSRNOP00000042590   ⟸   ENSRNOT00000041994
RefSeq Acc Id: ENSRNOP00000059423   ⟸   ENSRNOT00000068629
RefSeq Acc Id: ENSRNOP00000062924   ⟸   ENSRNOT00000068177
RefSeq Acc Id: XP_038950889   ⟸   XM_039094961
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038950886   ⟸   XM_039094958
- Peptide Label: isoform X11
- UniProtKB: D3ZFY7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038950887   ⟸   XM_039094959
- Peptide Label: isoform X11
- UniProtKB: D3ZFY7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038950882   ⟸   XM_039094954
- Peptide Label: isoform X7
- UniProtKB: A0A8I6A5C3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000078222   ⟸   ENSRNOT00000093876
RefSeq Acc Id: ENSRNOP00000087887   ⟸   ENSRNOT00000112213
RefSeq Acc Id: ENSRNOP00000078224   ⟸   ENSRNOT00000113025
RefSeq Acc Id: ENSRNOP00000096277   ⟸   ENSRNOT00000117420
RefSeq Acc Id: ENSRNOP00000097864   ⟸   ENSRNOT00000105283
RefSeq Acc Id: NP_001406693   ⟸   NM_001419764
- UniProtKB: A0A8I5YC85 (UniProtKB/TrEMBL),   D4A2Q3 (UniProtKB/TrEMBL),   A6KFK2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131453   ⟸   XM_063275383
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063131463   ⟸   XM_063275393
- Peptide Label: isoform X14
RefSeq Acc Id: XP_063131462   ⟸   XM_063275392
- Peptide Label: isoform X13
RefSeq Acc Id: XP_063131454   ⟸   XM_063275384
- Peptide Label: isoform X5
- UniProtKB: D4A2Q3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131451   ⟸   XM_063275381
- Peptide Label: isoform X1
- UniProtKB: D4A2Q3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131452   ⟸   XM_063275382
- Peptide Label: isoform X2
- UniProtKB: D4A2Q3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131460   ⟸   XM_063275390
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063131461   ⟸   XM_063275391
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063131456   ⟸   XM_063275386
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063131459   ⟸   XM_063275389
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063131457   ⟸   XM_063275387
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063131458   ⟸   XM_063275388
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063131464   ⟸   XM_063275394
- Peptide Label: isoform X15
RefSeq Acc Id: XP_063131468   ⟸   XM_063275398
- Peptide Label: isoform X20
- UniProtKB: D4A404 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131469   ⟸   XM_063275399
- Peptide Label: isoform X21
- UniProtKB: A0A8I6AT18 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131466   ⟸   XM_063275396
- Peptide Label: isoform X18
- UniProtKB: D4A404 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131476   ⟸   XM_063275406
- Peptide Label: isoform X28
RefSeq Acc Id: XP_063131467   ⟸   XM_063275397
- Peptide Label: isoform X19
- UniProtKB: D4A404 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131465   ⟸   XM_063275395
- Peptide Label: isoform X17
- UniProtKB: D4A404 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131474   ⟸   XM_063275404
- Peptide Label: isoform X26
RefSeq Acc Id: XP_063131475   ⟸   XM_063275405
- Peptide Label: isoform X27
RefSeq Acc Id: XP_063131473   ⟸   XM_063275403
- Peptide Label: isoform X25
RefSeq Acc Id: XP_063131472   ⟸   XM_063275402
- Peptide Label: isoform X24
RefSeq Acc Id: XP_063131471   ⟸   XM_063275401
- Peptide Label: isoform X23
Protein Domains
PH   SEC7

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A2Q3-F1-model_v2 AlphaFold D4A2Q3 1-1044 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700066
Promoter ID:EPDNEW_R10584
Type:multiple initiation site
Name:Psd3_1
Description:pleckstrin and Sec7 domain containing 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01623,553,574 - 23,553,634EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1559968 AgrOrtholog
BioCyc Gene G2FUF-11683 BioCyc
Ensembl Genes ENSRNOG00000013884 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000041994.7 UniProtKB/TrEMBL
  ENSRNOT00000068177.5 UniProtKB/TrEMBL
  ENSRNOT00000068629.5 UniProtKB/TrEMBL
  ENSRNOT00000093876.1 UniProtKB/TrEMBL
  ENSRNOT00000105283.1 UniProtKB/TrEMBL
  ENSRNOT00000112213.1 UniProtKB/TrEMBL
  ENSRNOT00000113025.1 UniProtKB/TrEMBL
  ENSRNOT00000117420.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1000.11 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
InterPro PH_9 UniProtKB/TrEMBL
  PH_dom-spectrin-type UniProtKB/TrEMBL
  PH_like_dom UniProtKB/TrEMBL
  Pleckstrin_homology UniProtKB/TrEMBL
  Sec7 UniProtKB/TrEMBL
  SEC7_alpha_orthog UniProtKB/TrEMBL
  Sec7_sf UniProtKB/TrEMBL
KEGG Report rno:306380 UniProtKB/TrEMBL
NCBI Gene 306380 ENTREZGENE
PANTHER GUANYL-NUCLEOTIDE EXCHANGE FACTOR UniProtKB/TrEMBL
  PH AND SEC7 DOMAIN-CONTAINING PROTEIN 3 UniProtKB/TrEMBL
Pfam PH_9 UniProtKB/TrEMBL
  Sec7 UniProtKB/TrEMBL
PhenoGen Psd3 PhenoGen
PRINTS SPECTRINPH UniProtKB/TrEMBL
PROSITE PH_DOMAIN UniProtKB/TrEMBL
  SEC7 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000013884 RatGTEx
SMART Sec7 UniProtKB/TrEMBL
  SM00233 UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
  Sec7 UniProtKB/TrEMBL
UniProt A0A8I5Y8H6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5YC85 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A5C3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ANS5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AT18 ENTREZGENE, UniProtKB/TrEMBL
  A6KFK2 ENTREZGENE, UniProtKB/TrEMBL
  D3ZFY7 ENTREZGENE, UniProtKB/TrEMBL
  D4A2Q3 ENTREZGENE, UniProtKB/TrEMBL
  D4A404 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-28 Psd3  pleckstrin and Sec7 domain containing 3  RGD1559968_predicted  similar to ADP-ribosylation factor guanine nucleotide factor 6 isoform a (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1559968_predicted  similar to ADP-ribosylation factor guanine nucleotide factor 6 isoform a (predicted)  LOC306380  similar to ADP-ribosylation factor guanine nucleotide factor 6 isoform a  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC306380  similar to ADP-ribosylation factor guanine nucleotide factor 6 isoform a      Symbol and Name status set to provisional 70820 PROVISIONAL