Rpl7-ps31 (ribosomal protein L7, pseudogene 31) - Rat Genome Database

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Gene: Rpl7-ps31 (ribosomal protein L7, pseudogene 31) Rattus norvegicus
Analyze
Symbol: Rpl7-ps31
Name: ribosomal protein L7, pseudogene 31
RGD ID: 1559574
Description: INTERACTS WITH 17alpha-ethynylestradiol; ammonium chloride
Type: pseudo
RefSeq Status: INFERRED
Previously known as: 60S ribosomal protein L7-like; LOC100911094; LOC305930; RGD1559574; ribosomal protein L7 like 2; Rpl7l2; similar to 60S ribosomal protein L7
Related Functional Gene: Rpl7  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81537,389,932 - 37,390,796 (-)NCBIGRCr8GRCr8GRCr8
mRatBN7.21533,274,409 - 33,275,305 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.01539,577,289 - 39,578,156 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01543,394,602 - 43,395,459 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41538,245,962 - 38,246,743 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1532,968,802 - 32,969,669 (-)NCBICelera
Cytogenetic Map15p12NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Rpl7-ps31
1 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
10755503Bp391Blood pressure QTL 3912.37arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)152024860037896129Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
9589149Insul29Insulin level QTL 299.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)15134723002Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
8552920Pigfal8Plasma insulin-like growth factor 1 level QTL 83blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)15134723002Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151111114256111142Rat
8694361Abfw6Abdominal fat weight QTL 610.20.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)15134723002Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)152803066582262678Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat
152025253Hrtrt24Heart rate QTL 243.82heart pumping trait (VT:2000009)152788577486257085Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152211793367117933Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)151985656646187442Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
1582251Gluco24Glucose level QTL 243.20.0008blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)15553075650530756Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)151985656634924750Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)152803066582262678Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
sensory system
visual system
1 4 5 16 5 6 10 1 4 4

Sequence


RefSeq Acc Id: XM_039093870   ⟹   XP_038949798
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21533,274,409 - 33,275,305 (-)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-13568 BioCyc
NCBI Gene 305930 ENTREZGENE
PhenoGen Rpl7-ps31 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-11-27 Rpl7-ps31  ribosomal protein L7, pseudogene 31  Rpl7l2  ribosomal protein L7 like 2  Name and Symbol and Type changed (type changed from [protein-coding] to [pseudo]) 629549 APPROVED
2023-09-19 Rpl7l2  ribosomal protein L7 like 2  RGD1559574  similar to 60S ribosomal protein L7  Symbol and Name Changed 1299863 APPROVED
2015-07-29 RGD1559574  similar to 60S ribosomal protein L7  LOC100911094  60S ribosomal protein L7-like  Data merged from RGD:6494994 737654 PROVISIONAL
2012-07-05 LOC100911094  60S ribosomal protein L7-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 RGD1559574  similar to 60S ribosomal protein L7   RGD1559574_predicted  similar to 60S ribosomal protein L7 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1559574_predicted  similar to 60S ribosomal protein L7 (predicted)  LOC305930  similar to 60S ribosomal protein L7  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC305930  similar to 60S ribosomal protein L7      Symbol and Name status set to provisional 70820 PROVISIONAL