Efhd1 (EF-hand domain family, member D1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Efhd1 (EF-hand domain family, member D1) Rattus norvegicus
Analyze
Symbol: Efhd1
Name: EF-hand domain family, member D1
RGD ID: 1559565
Description: Predicted to enable calcium ion binding activity and calcium ion sensor activity. Predicted to be involved in regulation of cellular hyperosmotic salinity response. Predicted to act upstream of or within neuron projection development. Predicted to be active in mitochondrial inner membrane. Orthologous to human EFHD1 (EF-hand domain family member D1); INTERACTS WITH 6-propyl-2-thiouracil; aflatoxin B1; alpha-Zearalanol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: EF hand domain containing 1; EF-hand domain-containing protein D1; LOC501181; RGD1559565; similar to EF hand domain containing 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8995,386,155 - 95,432,800 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl995,386,169 - 95,432,798 (+)EnsemblGRCr8
mRatBN7.2987,938,259 - 87,984,917 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl987,938,284 - 87,984,917 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx996,362,302 - 96,408,958 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09101,498,532 - 101,545,035 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0999,866,535 - 99,913,163 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0994,362,249 - 94,408,884 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl994,362,299 - 94,408,885 (+)Ensemblrn6Rnor6.0
Rnor_5.0994,084,433 - 94,131,498 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4986,076,009 - 86,124,552 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera985,350,640 - 85,396,772 (+)NCBICelera
Cytogenetic Map9q35NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-nicotine  (ISO)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4,6-tribromophenol  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (EXP)
alpha-Zearalanol  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (EXP,ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[e]pyrene  (ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
chloroprene  (EXP,ISO)
chlorpyrifos  (ISO)
choline  (ISO)
chrysene  (ISO)
cisplatin  (ISO)
cordycepin  (ISO)
coumestrol  (ISO)
Cuprizon  (EXP)
cytarabine  (ISO)
daidzein  (ISO)
daidzein 7-O-beta-D-glucoside  (ISO)
decabromodiphenyl ether  (ISO)
dibutyl phthalate  (EXP,ISO)
dichloroacetic acid  (ISO)
dicrotophos  (ISO)
dioxygen  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
Enterolactone  (ISO)
entinostat  (ISO)
ethanol  (ISO)
folic acid  (ISO)
genistein  (ISO)
genistein 7-O-beta-D-glucoside  (ISO)
glycitein  (ISO)
glycitin  (ISO)
L-methionine  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
medroxyprogesterone acetate  (ISO)
methapyrilene  (ISO)
methylmercury chloride  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
morphine  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
nickel atom  (ISO)
nicotine  (ISO)
paracetamol  (EXP)
pentanal  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctanoic acid  (EXP)
potassium chromate  (ISO)
potassium dichromate  (ISO)
progesterone  (ISO)
propanal  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
serpentine asbestos  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (ISO)
sulfadimethoxine  (EXP)
sulforaphane  (ISO)
sunitinib  (ISO)
T-2 toxin  (ISO)
tamoxifen  (ISO)
tert-butyl hydroperoxide  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
triptonide  (ISO)
valproic acid  (ISO)
vancomycin  (ISO)
vorinostat  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16336229   PMID:18614015   PMID:23376485   PMID:26975899  


Genomics

Comparative Map Data
Efhd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8995,386,155 - 95,432,800 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl995,386,169 - 95,432,798 (+)EnsemblGRCr8
mRatBN7.2987,938,259 - 87,984,917 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl987,938,284 - 87,984,917 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx996,362,302 - 96,408,958 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09101,498,532 - 101,545,035 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0999,866,535 - 99,913,163 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0994,362,249 - 94,408,884 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl994,362,299 - 94,408,885 (+)Ensemblrn6Rnor6.0
Rnor_5.0994,084,433 - 94,131,498 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4986,076,009 - 86,124,552 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera985,350,640 - 85,396,772 (+)NCBICelera
Cytogenetic Map9q35NCBI
EFHD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382232,606,057 - 232,682,776 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2232,606,057 - 232,682,776 (+)Ensemblhg38GRCh38
GRCh372233,470,767 - 233,547,486 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362233,206,568 - 233,255,730 (+)NCBIBuild 36Build 36hg18NCBI36
Build 342233,323,828 - 233,372,990NCBI
Celera2227,235,077 - 227,311,815 (+)NCBICelera
Cytogenetic Map2q37.1NCBI
HuRef2225,321,506 - 225,397,315 (+)NCBIHuRef
CHM1_12233,476,803 - 233,553,533 (+)NCBICHM1_1
T2T-CHM13v2.02233,092,814 - 233,169,537 (+)NCBIT2T-CHM13v2.0
Efhd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39187,192,075 - 87,238,563 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl187,192,085 - 87,238,561 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38187,264,353 - 87,310,841 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl187,264,363 - 87,310,839 (+)Ensemblmm10GRCm38
MGSCv37189,160,939 - 89,207,366 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36189,095,535 - 89,141,962 (+)NCBIMGSCv36mm8
Celera190,237,172 - 90,283,693 (+)NCBICelera
Cytogenetic Map1C5NCBI
cM Map144.15NCBI
Efhd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554533,344,919 - 3,361,399 (-)Ensembl
ChiLan1.0NW_0049554533,344,919 - 3,378,157 (-)NCBIChiLan1.0ChiLan1.0
EFHD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213135,238,681 - 135,288,305 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B135,253,646 - 135,303,270 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B119,865,065 - 119,914,446 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B238,783,634 - 238,832,931 (+)NCBIPanPan1.1PanPan1.1panPan2
EFHD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12544,281,673 - 44,307,347 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2544,281,710 - 44,306,220 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2544,756,345 - 44,801,725 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02544,519,198 - 44,564,677 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2544,519,213 - 44,564,668 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12544,444,924 - 44,490,319 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02544,290,617 - 44,336,242 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02544,445,809 - 44,491,251 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Efhd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303186,455,047 - 186,493,942 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365254,445,773 - 4,484,680 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365254,445,779 - 4,484,674 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EFHD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15133,120,093 - 133,169,428 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.115133,120,092 - 133,169,430 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215147,076,908 - 147,124,587 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EFHD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110118,652,927 - 118,704,717 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10118,653,349 - 118,704,701 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604080,801,247 - 80,852,639 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Efhd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248435,346,767 - 5,377,596 (+)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Efhd1
233 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:690
Count of miRNA genes:246
Interacting mature miRNAs:285
Transcripts:ENSRNOT00000021168
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94859825193598251Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)958163035100929646Rat
724547Cm21Cardiac mass QTL 212.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)979271511102910209Rat
731171Glom6Glomerulus QTL 62.80.0003kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)964573531109573531Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)93696235992058970Rat
11353957Bmd92Bone mineral density QTL 920.01tibia mineral mass (VT:1000283)volumetric bone mineral density (CMO:0001553)94611419991114199Rat
2303178Bp334Blood pressure QTL 3343.70.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)97927151191616855Rat
61385Edpm9Estrogen-dependent pituitary mass QTL 93.430.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)963869687108869687Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)956771635101771635Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)93696235995410867Rat
11353951Bp394Blood pressure QTL 394arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94464992189649921Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)96207227596470995Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)961381434104821652Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)975712843111552878Rat
4889852Pur26Proteinuria QTL 26150.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)977813894101597663Rat
7794784Mcs31Mammary carcinoma susceptibility QTL 312.98mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)977813894111552878Rat
12879506Pur33Proteinuria QTL 33urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)94464992189649921Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
10058949Gmadr5Adrenal mass QTL 520.014adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)94279151387976209Rat
1578757Pur6Proteinuria QTL 63.30.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)96207227596470995Rat
4889943Bss90Bone structure and strength QTL 904.1tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)98636963192058970Rat

Markers in Region
RH130095  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2987,984,662 - 87,984,876 (+)MAPPERmRatBN7.2
Rnor_6.0994,408,630 - 94,408,843NCBIRnor6.0
Rnor_5.0994,131,244 - 94,131,457UniSTSRnor5.0
RGSC_v3.4986,124,298 - 86,124,511UniSTSRGSC3.4
Celera985,396,518 - 85,396,731UniSTS
Cytogenetic Map9q35UniSTS
D17S1789  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2987,972,545 - 87,973,112 (+)MAPPERmRatBN7.2
mRatBN7.26131,984,729 - 131,985,679 (+)MAPPERmRatBN7.2
Rnor_6.06137,712,818 - 137,713,767NCBIRnor6.0
Rnor_6.0994,396,513 - 94,397,079NCBIRnor6.0
Rnor_5.0994,119,127 - 94,119,693UniSTSRnor5.0
Rnor_5.06146,709,000 - 146,709,949UniSTSRnor5.0
RGSC_v3.46137,910,522 - 137,911,471UniSTSRGSC3.4
RGSC_v3.4986,112,181 - 86,112,747UniSTSRGSC3.4
Celera985,384,401 - 85,384,967UniSTS
Celera6129,522,886 - 129,523,835UniSTS
Cytogenetic Map9q35UniSTS
Cytogenetic Map6q32UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 154 91 90 59 73 59 6 337 173 11 133 81 92 31 13 13

Sequence


Ensembl Acc Id: ENSRNOT00000021168   ⟹   ENSRNOP00000021168
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl995,386,169 - 95,432,798 (+)Ensembl
mRatBN7.2 Ensembl987,938,284 - 87,984,917 (+)Ensembl
Rnor_6.0 Ensembl994,362,299 - 94,408,885 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000097893   ⟹   ENSRNOP00000096620
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl995,386,231 - 95,432,798 (+)Ensembl
mRatBN7.2 Ensembl987,938,284 - 87,984,872 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000121843   ⟹   ENSRNOP00000105908
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl995,386,231 - 95,432,798 (+)Ensembl
RefSeq Acc Id: NM_001109310   ⟹   NP_001102780
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8995,386,177 - 95,432,800 (+)NCBI
mRatBN7.2987,938,284 - 87,984,917 (+)NCBI
Rnor_6.0994,362,285 - 94,408,884 (+)NCBI
Rnor_5.0994,084,433 - 94,131,498 (+)NCBI
RGSC_v3.4986,076,009 - 86,124,552 (+)RGD
Celera985,350,640 - 85,396,772 (+)RGD
Sequence:
RefSeq Acc Id: XM_006245468   ⟹   XP_006245530
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8995,386,156 - 95,432,799 (+)NCBI
mRatBN7.2987,938,262 - 87,984,007 (+)NCBI
Rnor_6.0994,362,249 - 94,407,974 (+)NCBI
Rnor_5.0994,084,433 - 94,131,498 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039084118   ⟹   XP_038940046
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8995,386,155 - 95,428,023 (+)NCBI
mRatBN7.2987,938,261 - 87,980,951 (+)NCBI
RefSeq Acc Id: XM_039084119   ⟹   XP_038940047
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8995,386,156 - 95,421,782 (+)NCBI
mRatBN7.2987,938,261 - 87,975,381 (+)NCBI
RefSeq Acc Id: NP_001102780   ⟸   NM_001109310
- UniProtKB: D4A9T5 (UniProtKB/TrEMBL),   A6JWM1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006245530   ⟸   XM_006245468
- Peptide Label: isoform X3
- UniProtKB: A0A8I6ASV0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000021168   ⟸   ENSRNOT00000021168
RefSeq Acc Id: XP_038940046   ⟸   XM_039084118
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038940047   ⟸   XM_039084119
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000096620   ⟸   ENSRNOT00000097893
Ensembl Acc Id: ENSRNOP00000105908   ⟸   ENSRNOT00000121843
Protein Domains
EF-hand

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A9T5-F1-model_v2 AlphaFold D4A9T5 1-240 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696833
Promoter ID:EPDNEW_R7358
Type:initiation region
Name:Efhd1_1
Description:EF-hand domain family, member D1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0994,362,349 - 94,362,409EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1559565 AgrOrtholog
BioCyc Gene G2FUF-26845 BioCyc
Ensembl Genes ENSRNOG00000015596 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000021168 ENTREZGENE
  ENSRNOT00000021168.6 UniProtKB/TrEMBL
  ENSRNOT00000097893 ENTREZGENE
  ENSRNOT00000097893.1 UniProtKB/TrEMBL
  ENSRNOT00000121843 ENTREZGENE
Gene3D-CATH EF-hand UniProtKB/TrEMBL
InterPro AIF-1_EF_pair UniProtKB/TrEMBL
  EF-hand-like_dom UniProtKB/TrEMBL
  EF_hand_Ca-bd UniProtKB/TrEMBL
  EFHD1/2 UniProtKB/TrEMBL
KEGG Report rno:501181 UniProtKB/TrEMBL
NCBI Gene 501181 ENTREZGENE
PANTHER EF-HAND DOMAIN-CONTAINING PROTEIN D1 UniProtKB/TrEMBL
  PTHR13025 UniProtKB/TrEMBL
Pfam AIF-1 UniProtKB/TrEMBL
  EF_hand_5 UniProtKB/TrEMBL
PhenoGen Efhd1 PhenoGen
PROSITE EF_HAND_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000015596 RatGTEx
SMART EFh UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt A0A8I6ASV0 ENTREZGENE, UniProtKB/TrEMBL
  A6JWM1 ENTREZGENE, UniProtKB/TrEMBL
  D4A9T5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-11-25 Efhd1  EF-hand domain family, member D1  Efhd1  EF hand domain containing 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-06 Efhd1  EF hand domain containing 1  RGD1559565_predicted  similar to EF hand domain containing 1 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1559565_predicted  similar to EF hand domain containing 1 (predicted)  LOC501181  similar to EF hand domain containing 1  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC501181  similar to EF hand domain containing 1      Symbol and Name status set to provisional 70820 PROVISIONAL