Tnfrsf19 (tumor necrosis factor receptor superfamily, member 19) - Rat Genome Database

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Gene: Tnfrsf19 (tumor necrosis factor receptor superfamily, member 19) Mus musculus
Analyze
Symbol: Tnfrsf19
Name: tumor necrosis factor receptor superfamily, member 19
RGD ID: 1558479
MGI Page MGI
Description: Predicted to enable signaling receptor activity. Acts upstream of or within hair follicle development and positive regulation of canonical NF-kappaB signal transduction. Predicted to be located in extracellular region. Predicted to be active in plasma membrane. Is expressed in several structures, including alimentary system; brain; embryo mesenchyme; integumental system; and respiratory system. Orthologous to human TNFRSF19 (TNF receptor superfamily member 19).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AL023044; AW123854; TA; TAJ; TAJ-; TAJ-ALPHA; Toxicity and JNK inducer; Tr; TRA; TRADE; Troy; tumor necrosis factor receptor superfamily member 19
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391461,201,283 - 61,284,304 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1461,201,324 - 61,283,939 (-)EnsemblGRCm39 Ensembl
GRCm381460,963,834 - 61,046,855 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1460,963,875 - 61,046,490 (-)EnsemblGRCm38mm10GRCm38
MGSCv371461,582,671 - 61,665,692 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361459,918,146 - 60,000,579 (-)NCBIMGSCv36mm8
Celera1458,735,086 - 58,817,672 (-)NCBICelera
Cytogenetic Map14D1NCBI
cM Map1432.06NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (EXP)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (EXP)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP)
2-methylcholine  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (EXP)
4-vinylcyclohexene dioxide  (EXP)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (ISO)
8-Br-cAMP  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
aflatoxin M1  (ISO)
all-trans-retinoic acid  (EXP,ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
azathioprine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
beta-naphthoflavone  (ISO)
bilirubin IXalpha  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
caffeine  (ISO)
calciol  (EXP)
calcitriol  (ISO)
cannabidiol  (ISO)
capsaicin  (ISO)
carbamazepine  (ISO)
carbon nanotube  (EXP)
carmustine  (ISO)
CGP 52608  (ISO)
chloroprene  (EXP)
choline  (EXP)
cisplatin  (EXP,ISO)
copper atom  (ISO)
copper(0)  (ISO)
cyclophosphamide  (EXP)
cyclosporin A  (ISO)
cyproconazole  (EXP)
cytarabine  (ISO)
diallyl trisulfide  (ISO)
dichloroacetic acid  (EXP)
dioxygen  (EXP)
dorsomorphin  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP)
ethyl methanesulfonate  (ISO)
folic acid  (EXP)
FR900359  (ISO)
Garcinol  (ISO)
indole-3-methanol  (ISO)
iron dichloride  (ISO)
L-methionine  (EXP)
melphalan  (ISO)
menadione  (EXP)
mercury dibromide  (ISO)
methapyrilene  (ISO)
methoxyacetic acid  (ISO)
methoxychlor  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
Monobutylphthalate  (ISO)
N,N-diethyl-m-toluamide  (ISO)
N-nitrosodiethylamine  (EXP)
naproxen  (ISO)
nickel atom  (EXP)
ozone  (EXP)
p-chloromercuribenzoic acid  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
pentanal  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
permethrin  (ISO)
phenobarbital  (EXP)
phenylmercury acetate  (ISO)
potassium chromate  (ISO)
progesterone  (ISO)
propanal  (ISO)
propiconazole  (EXP)
propionic acid  (ISO)
quercetin  (ISO)
rotenone  (EXP)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
serpentine asbestos  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
Soman  (ISO)
sumatriptan  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
titanium dioxide  (EXP)
toluene 2,4-diisocyanate  (EXP)
tributylstannane  (EXP)
trichostatin A  (ISO)
trimellitic anhydride  (EXP)
triptonide  (EXP)
tunicamycin  (EXP)
urethane  (ISO)
valproic acid  (ISO)
vincristine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. MGD IEA MGD IEA
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7671812   PMID:8889548   PMID:10349636   PMID:10585776   PMID:10725249   PMID:10764796   PMID:10809768   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11239407  
PMID:12060722   PMID:12477932   PMID:12702649   PMID:12763585   PMID:12781685   PMID:12904583   PMID:12972005   PMID:14610273   PMID:14699584   PMID:14966863   PMID:15489334   PMID:15694321  
PMID:15694322   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16481354   PMID:16524929   PMID:16602821   PMID:16782087   PMID:16820005   PMID:16870160   PMID:17095659   PMID:17278136  
PMID:17362907   PMID:17470639   PMID:18202551   PMID:18584774   PMID:18689798   PMID:18799693   PMID:20093372   PMID:21267068   PMID:21873635   PMID:21947380   PMID:22235033   PMID:22340501  
PMID:22649568   PMID:23142137   PMID:24120136   PMID:24129566   PMID:24749558   PMID:24997521   PMID:25645944   PMID:26367446   PMID:26559543   PMID:28813421   PMID:29237753   PMID:29311336  
PMID:29449449   PMID:29555813   PMID:30337686   PMID:32468660   PMID:34321999   PMID:34358453   PMID:34391772   PMID:35523142   PMID:37227110   PMID:38565145  


Genomics

Comparative Map Data
Tnfrsf19
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391461,201,283 - 61,284,304 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1461,201,324 - 61,283,939 (-)EnsemblGRCm39 Ensembl
GRCm381460,963,834 - 61,046,855 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1460,963,875 - 61,046,490 (-)EnsemblGRCm38mm10GRCm38
MGSCv371461,582,671 - 61,665,692 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361459,918,146 - 60,000,579 (-)NCBIMGSCv36mm8
Celera1458,735,086 - 58,817,672 (-)NCBICelera
Cytogenetic Map14D1NCBI
cM Map1432.06NCBI
TNFRSF19
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381323,570,412 - 23,676,093 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1323,570,370 - 23,676,104 (+)EnsemblGRCh38hg38GRCh38
GRCh371324,144,551 - 24,250,232 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361323,042,723 - 23,148,232 (+)NCBINCBI36Build 36hg18NCBI36
Build 341323,042,722 - 23,148,231NCBI
Celera135,207,376 - 5,312,894 (+)NCBICelera
Cytogenetic Map13q12.12NCBI
HuRef134,955,857 - 5,061,345 (+)NCBIHuRef
CHM1_11324,112,757 - 24,218,407 (+)NCBICHM1_1
T2T-CHM13v2.01322,776,896 - 22,882,553 (+)NCBIT2T-CHM13v2.0
Tnfrsf19
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81539,268,305 - 39,334,566 (-)NCBIGRCr8
mRatBN7.21535,092,206 - 35,158,472 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1535,092,206 - 35,180,795 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1536,953,743 - 37,020,054 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01538,104,381 - 38,170,694 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01536,552,934 - 36,619,193 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01541,249,820 - 41,316,203 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1541,246,308 - 41,338,284 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01545,061,675 - 45,127,279 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41540,051,695 - 40,117,968 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1534,791,461 - 34,857,582 (-)NCBICelera
Cytogenetic Map15p12NCBI
Tnfrsf19
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554973,927,604 - 4,024,353 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554973,945,119 - 4,022,478 (+)NCBIChiLan1.0ChiLan1.0
TNFRSF19
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21423,184,686 - 23,290,633 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11314,292,173 - 14,397,932 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0134,880,340 - 4,986,160 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11323,174,613 - 23,280,316 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1323,174,613 - 23,280,316 (+)Ensemblpanpan1.1panPan2
TNFRSF19
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12514,985,893 - 15,075,701 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2514,927,599 - 15,055,449 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2515,062,617 - 15,152,449 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02515,116,246 - 15,206,125 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2515,116,263 - 15,206,145 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12514,997,318 - 15,087,106 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02514,998,952 - 15,088,740 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02515,048,760 - 15,138,606 (-)NCBIUU_Cfam_GSD_1.0
Tnfrsf19
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945117,179,318 - 117,271,131 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366881,790,824 - 1,883,351 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366881,791,350 - 1,883,351 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TNFRSF19
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl112,543,812 - 2,640,736 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1112,469,306 - 2,640,737 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2111,858,979 - 1,955,846 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TNFRSF19
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.133,429,290 - 3,535,841 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl33,429,545 - 3,536,370 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605740,997,195 - 41,103,284 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tnfrsf19
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477614,081,349 - 14,171,281 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477614,081,607 - 14,171,043 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tnfrsf19
3068 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1582
Count of miRNA genes:534
Interacting mature miRNAs:619
Transcripts:ENSMUST00000111234, ENSMUST00000111236
Prediction methods:Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
14695040Ifbl5_minterfrontal bone length 5 (mouse)146096082362006713Mouse
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1301489Lbm10_mlean body mass 10 (mouse)Not determined145376129687761529Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143504579768785736Mouse
1301424Skull21_mskull morphology 21 (mouse)Not determined144296241676962593Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
4142364Pbwg18_mpostnatal body weight growth 18 (mouse)Not determined145228198486282125Mouse
14695043Ifbw4_minterfrontal bone width 4 (mouse)146096082362006713Mouse
4141400Nilac8_mnicotine induced locomotor activity 8 (mouse)Not determined144306584777066045Mouse
10043889Cia52_mcollagen induced arthritis QTL 52 (mouse)Not determined145608238190082509Mouse
1301562Hwq1_mheart weight quantitative locus 1 (mouse)Not determined145654674590546941Mouse
1357565wrmod1_mwobbler modifier 1 (mouse)Not determined1458179640101859473Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
4142419Tgq26_mtriglyceride QTL 26 (mouse)Not determined4033731974337319Mouse
1300605El5_mepilepsy 5 (mouse)Not determined144945542583455556Mouse
11039527Ccc2_mcolitis susceptibility in the Collaborative Cross 2 (mouse)145991861294138217Mouse
1301091Bbaa21_mB.burgdorferi-associated arthritis 21 (mouse)Not determined144306584777066045Mouse
12880432Fgf23lq3_mFGF23 serum level QTL 3 (mouse)145393744087937440Mouse
1300998Cia17_mcollagen induced arthritis 17 (mouse)Not determined143033525064335381Mouse
1300805Mors3_mmodifier of obesity related sterility 3 (mouse)Not determined144303727077037418Mouse
10043887Cia50_mcollagen induced arthritis QTL 50 (mouse)Not determined143743018571430320Mouse
10043886Cia49_mcollagen induced arthritis QTL 49 (mouse)Not determined142999699463997133Mouse
1300909Ath13_matherosclerosis 13 (mouse)Not determined143033525064335381Mouse

Markers in Region
AW123854  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381460,964,152 - 60,964,256UniSTSGRCm38
MGSCv371461,582,989 - 61,583,093UniSTSGRCm37
Celera1458,735,404 - 58,735,508UniSTS
Cytogenetic Map14D1UniSTS
Whitehead/MRC_RH14694.98UniSTS
RH125405  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381460,964,542 - 60,964,640UniSTSGRCm38
MGSCv371461,583,379 - 61,583,477UniSTSGRCm37
Celera1458,735,794 - 58,735,892UniSTS
Cytogenetic Map14D1UniSTS
UniSTS:237201  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381460,965,463 - 60,965,754UniSTSGRCm38
MGSCv371461,584,300 - 61,584,591UniSTSGRCm37
Celera1458,736,715 - 58,737,006UniSTS
Cytogenetic Map14D1UniSTS


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001164155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_013869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036158664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB040432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB040433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC103357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC124555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF167552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF167553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF167554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF173166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK011232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK050262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK083283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB526959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB858206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC030062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY637570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB244999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF727607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000111234   ⟹   ENSMUSP00000106865
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1461,201,485 - 61,283,918 (-)Ensembl
GRCm38.p6 Ensembl1460,964,036 - 61,046,469 (-)Ensembl
Ensembl Acc Id: ENSMUST00000111236   ⟹   ENSMUSP00000106867
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1461,201,324 - 61,275,399 (-)Ensembl
GRCm38.p6 Ensembl1460,963,875 - 61,037,950 (-)Ensembl
Ensembl Acc Id: ENSMUST00000224371   ⟹   ENSMUSP00000153577
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1461,211,810 - 61,283,939 (-)Ensembl
GRCm38.p6 Ensembl1460,974,361 - 61,046,490 (-)Ensembl
Ensembl Acc Id: ENSMUST00000225501
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1461,203,800 - 61,213,334 (-)Ensembl
GRCm38.p6 Ensembl1460,966,351 - 60,975,885 (-)Ensembl
Ensembl Acc Id: ENSMUST00000225730   ⟹   ENSMUSP00000152920
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1461,211,971 - 61,275,340 (-)Ensembl
GRCm38.p6 Ensembl1460,974,522 - 61,037,891 (-)Ensembl
RefSeq Acc Id: NM_001164155   ⟹   NP_001157627
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391461,201,283 - 61,275,436 (-)NCBI
GRCm381460,963,834 - 61,037,987 (-)NCBI
MGSCv371461,582,671 - 61,665,692 (-)RGD
Celera1458,735,086 - 58,817,672 (-)RGD
cM Map14 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_013869   ⟹   NP_038897
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391461,201,283 - 61,284,304 (-)NCBI
GRCm381460,963,834 - 61,046,855 (-)ENTREZGENE
MGSCv371461,582,671 - 61,665,692 (-)RGD
Celera1458,735,086 - 58,817,672 (-)RGD
cM Map14 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_036158664   ⟹   XP_036014557
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391461,201,298 - 61,275,427 (-)NCBI
Sequence:
RefSeq Acc Id: NP_038897   ⟸   NM_013869
- Peptide Label: precursor
- UniProtKB: Q9JLL2 (UniProtKB/Swiss-Prot),   Q9JJH6 (UniProtKB/Swiss-Prot),   Q9JHF1 (UniProtKB/Swiss-Prot),   Q812G3 (UniProtKB/Swiss-Prot),   Q80T13 (UniProtKB/Swiss-Prot),   Q9QXW7 (UniProtKB/Swiss-Prot),   Q9JLL3 (UniProtKB/Swiss-Prot),   Q8BUM7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001157627   ⟸   NM_001164155
- Peptide Label: precursor
- UniProtKB: Q9QXW7 (UniProtKB/Swiss-Prot),   Q9JLL3 (UniProtKB/Swiss-Prot),   Q9JLL2 (UniProtKB/Swiss-Prot),   Q9JJH6 (UniProtKB/Swiss-Prot),   Q9JHF1 (UniProtKB/Swiss-Prot),   Q812G3 (UniProtKB/Swiss-Prot),   Q80T13 (UniProtKB/Swiss-Prot),   Q8BUM7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000106865   ⟸   ENSMUST00000111234
Ensembl Acc Id: ENSMUSP00000106867   ⟸   ENSMUST00000111236
Ensembl Acc Id: ENSMUSP00000152920   ⟸   ENSMUST00000225730
Ensembl Acc Id: ENSMUSP00000153577   ⟸   ENSMUST00000224371
RefSeq Acc Id: XP_036014557   ⟸   XM_036158664
- Peptide Label: isoform X1
- UniProtKB: Q8BWR1 (UniProtKB/TrEMBL)
Protein Domains
TNFR-Cys

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9JLL3-F1-model_v2 AlphaFold Q9JLL3 1-416 view protein structure

Promoters
RGD ID:8682626
Promoter ID:EPDNEW_M19343
Type:initiation region
Name:Tnfrsf19_1
Description:Mus musculus tumor necrosis factor receptor superfamily, member19 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M19344  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381461,037,973 - 61,038,033EPDNEW
RGD ID:8682628
Promoter ID:EPDNEW_M19344
Type:single initiation site
Name:Tnfrsf19_2
Description:Mus musculus tumor necrosis factor receptor superfamily, member19 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M19343  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381461,046,161 - 61,046,221EPDNEW
RGD ID:6825490
Promoter ID:MM_KWN:17123
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   ES_Cell,   Liver,   Lung
Transcripts:ENSMUST00000077444,   NM_013869,   UC007UFM.1,   UC007UFN.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361461,665,159 - 61,665,659 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1352474 AgrOrtholog
Ensembl Genes ENSMUSG00000060548 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000111234 ENTREZGENE
  ENSMUST00000111234.10 UniProtKB/Swiss-Prot
  ENSMUST00000111236 ENTREZGENE
  ENSMUST00000111236.4 UniProtKB/Swiss-Prot
  ENSMUST00000224371.2 UniProtKB/Swiss-Prot
  ENSMUST00000225730.2 UniProtKB/Swiss-Prot
Gene3D-CATH Tumor Necrosis Factor Receptor, subunit A, domain 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro TNFR/NGFR_Cys_rich_reg UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TNFR_19 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TNFRSF19_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TNR19/27/EDAR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:29820 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1352474 ENTREZGENE
NCBI Gene Tnfrsf19 ENTREZGENE
PANTHER PTHR12120:SF1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TNFR-CYS DOMAIN-CONTAINING PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam TNFR_c6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tnfrsf19 PhenoGen
PRINTS TNFACTORR19 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE TNFR_NGFR_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TNFR_NGFR_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART TNFR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt Q80T13 ENTREZGENE
  Q812G3 ENTREZGENE
  Q8BUM7 ENTREZGENE, UniProtKB/TrEMBL
  Q8BWR1 ENTREZGENE, UniProtKB/TrEMBL
  Q9JHF1 ENTREZGENE
  Q9JJH6 ENTREZGENE
  Q9JLL2 ENTREZGENE
  Q9JLL3 ENTREZGENE
  Q9QXW7 ENTREZGENE
  TNR19_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q80T13 UniProtKB/Swiss-Prot
  Q812G3 UniProtKB/Swiss-Prot
  Q9JHF1 UniProtKB/Swiss-Prot
  Q9JJH6 UniProtKB/Swiss-Prot
  Q9JLL2 UniProtKB/Swiss-Prot
  Q9QXW7 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-08-26 Tnfrsf19  tumor necrosis factor receptor superfamily, member 19  Tnfrsf20-pending  tumor necrosis factor receptor superfamily, member 20  Symbol and/or name updated 27372883 PROVISIONAL
2024-08-21 Tnfrsf20-pending  tumor necrosis factor receptor superfamily, member 20  Tnfrsf19  tumor necrosis factor receptor superfamily, member 19  Symbol and/or name change 5135510 APPROVED