Ccdc40 (coiled-coil domain containing 40) - Rat Genome Database

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Gene: Ccdc40 (coiled-coil domain containing 40) Mus musculus
Analyze
Symbol: Ccdc40
Name: coiled-coil domain containing 40
RGD ID: 1558436
MGI Page MGI
Description: Involved in epithelial cilium movement involved in determination of left/right asymmetry; lung development; and protein localization to cilium. Acts upstream of or within axoneme assembly and determination of left/right symmetry. Located in cilium and cytoplasm. Is active in motile cilium. Is expressed in several structures, including central nervous system; node; olfactory epithelium; and respiratory system. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 15. Orthologous to human CCDC40 (coiled-coil domain 40 molecular ruler complex subunit).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: B930008I02Rik; coiled-coil domain-containing protein 40; MGC109697; protein links; RP23-13O17.4
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911119,119,328 - 119,156,074 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11119,119,398 - 119,156,064 (+)EnsemblGRCm39 Ensembl
GRCm3811119,228,490 - 119,265,248 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11119,228,572 - 119,265,238 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711119,089,886 - 119,126,526 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611119,044,662 - 119,081,302 (+)NCBIMGSCv36mm8
Celera11130,973,426 - 131,010,143 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1183.35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
axoneme  (IEA,ISO)
cell projection  (IEA)
cilium  (IBA,IDA,IEA,ISO)
cytoplasm  (IBA,IDA,IEA)
extracellular region  (IEA)
motile cilium  (IDA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. Mouse MP Annotation Import Pipeline RGD automated import pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:21131974   PMID:21267068   PMID:21677750   PMID:21873635   PMID:26387594  
PMID:28182636   PMID:37321213   PMID:37890489   PMID:38355793  


Genomics

Comparative Map Data
Ccdc40
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911119,119,328 - 119,156,074 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11119,119,398 - 119,156,064 (+)EnsemblGRCm39 Ensembl
GRCm3811119,228,490 - 119,265,248 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11119,228,572 - 119,265,238 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711119,089,886 - 119,126,526 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611119,044,662 - 119,081,302 (+)NCBIMGSCv36mm8
Celera11130,973,426 - 131,010,143 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1183.35NCBI
CCDC40
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381780,036,642 - 80,100,613 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1780,036,632 - 80,100,613 (+)EnsemblGRCh38hg38GRCh38
GRCh371778,010,441 - 78,074,412 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361775,625,030 - 75,689,007 (+)NCBINCBI36Build 36hg18NCBI36
Celera1774,636,488 - 74,703,213 (+)NCBICelera
Cytogenetic Map17q25.3NCBI
HuRef1773,449,820 - 73,515,509 (+)NCBIHuRef
CHM1_11778,096,772 - 78,160,740 (+)NCBICHM1_1
T2T-CHM13v2.01780,935,298 - 81,001,052 (+)NCBIT2T-CHM13v2.0
Ccdc40
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810104,985,283 - 105,025,813 (+)NCBIGRCr8
GRCr8 Ensembl10104,985,283 - 105,026,197 (+)EnsemblGRCr8 Ensembl
mRatBN7.210104,486,748 - 104,527,284 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10104,486,748 - 104,527,243 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10109,589,799 - 109,630,004 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010109,052,821 - 109,093,030 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010104,407,383 - 104,447,874 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010108,055,270 - 108,393,408 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10108,340,240 - 108,372,862 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010107,952,498 - 108,005,242 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera10103,034,282 - 103,075,071 (+)NCBICelera
Cytogenetic Map10q32.3NCBI
Ccdc40
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555062,784,548 - 2,838,026 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555062,783,837 - 2,840,248 (-)NCBIChiLan1.0ChiLan1.0
CCDC40
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21996,095,461 - 96,162,320 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan117100,923,838 - 100,990,612 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01774,120,483 - 74,187,323 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11779,656,287 - 79,722,565 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1779,656,287 - 79,722,565 (+)Ensemblpanpan1.1panPan2
CCDC40
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.191,616,029 - 1,656,043 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl91,601,121 - 1,656,597 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha92,255,872 - 2,295,889 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.092,248,199 - 2,288,210 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl92,248,126 - 2,288,772 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.192,271,699 - 2,311,715 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.092,397,017 - 2,437,019 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.092,478,324 - 2,518,346 (-)NCBIUU_Cfam_GSD_1.0
Ccdc40
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056022,287,072 - 2,324,087 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365944,089,214 - 4,124,153 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365944,075,105 - 4,124,850 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC40
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl122,341,957 - 2,384,025 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1122,341,953 - 2,384,066 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2122,412,095 - 2,453,627 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC40
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11672,004,087 - 72,061,889 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607743,303,242 - 43,367,106 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc40
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248019,160,805 - 9,217,756 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248019,160,852 - 9,217,033 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ccdc40
1135 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:1486
Count of miRNA genes:645
Interacting mature miRNAs:806
Transcripts:ENSMUST00000035935, ENSMUST00000053440, ENSMUST00000125724, ENSMUST00000126652, ENSMUST00000133788, ENSMUST00000143066, ENSMUST00000147037, ENSMUST00000150358, ENSMUST00000155683
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11251723Ewc5_methanol withdrawal and consumption 5 (mouse)1189869251121973369Mouse
1302034Pkccl_mprotein kinase C content in lungs (mouse)Not determined1191604608121973369Mouse
1300944Alcp20_malcohol preference locus 20 (mouse)Not determined1195403965121973369Mouse
15014785Mvlq1_mmacrovesicular liver lesion QTL 1 (mouse)1186608320120608320Mouse
1301012Vispl_mvisual placing (mouse)Not determined11101022590121973369Mouse
15039374Adip29_madiposity 29 (mouse)1186608320120608320Mouse
1301983Berr2_mberghei resistance locus 2 (mouse)Not determined1198352609121973369Mouse
1300962Cd8mts4_mCD8 memory T cell subset 4 (mouse)Not determined1196137674121973369Mouse
10043976Obq33_mobesity QTL 33 (mouse)Not determined1198500469121973369Mouse
1301057Nidd4_mnon-insulin-dependent diabetes mellitus 4 (mouse)Not determined1196810136121973369Mouse
1301095El6_mepilepsy 6 (mouse)Not determined1193229183121973369Mouse
11341721Rvfs2_mRift Valley fever susceptibility 2 (mouse)11100254186120887165Mouse
15039376Bw42_mbody weight QTL 42 (mouse)1186608320120608320Mouse
1301958Alcp18_malcohol preference locus 18 (mouse)Not determined1195403965121973369Mouse
1558753Ath19_matherosclerosis 19 (mouse)Not determined1191604608121973369Mouse
10044001Alcw8_malcohol withdrawal 8 (mouse)Not determined1199254187121973369Mouse
14747003Mancz9_mmandible centroid size 9 (mouse)1185844911119844911Mouse
27226789Feml16_mfemur length 16, 10 week (mouse)1187490826121873369Mouse
11553867Stmm5_mskin tumor modifier of MSM 5 (mouse)11100058103121973369Mouse
10044007Hbnr14_mHeligmosomoides bakeri nematode resistance 14 (mouse)Not determined1187502600121502698Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001364767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001408391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001408393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001408394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001408395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_388387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK046971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK054172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL672140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC072591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC085159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CO043994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000053440   ⟹   ENSMUSP00000062198
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11119,119,955 - 119,153,726 (+)Ensembl
GRCm38.p6 Ensembl11119,229,129 - 119,262,900 (+)Ensembl
Ensembl Acc Id: ENSMUST00000125724
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11119,153,698 - 119,155,132 (+)Ensembl
GRCm38.p6 Ensembl11119,262,872 - 119,264,306 (+)Ensembl
Ensembl Acc Id: ENSMUST00000126652
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11119,149,753 - 119,156,062 (+)Ensembl
GRCm38.p6 Ensembl11119,258,927 - 119,265,236 (+)Ensembl
Ensembl Acc Id: ENSMUST00000133788
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11119,144,379 - 119,155,262 (+)Ensembl
GRCm38.p6 Ensembl11119,253,553 - 119,264,436 (+)Ensembl
Ensembl Acc Id: ENSMUST00000143066
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11119,129,544 - 119,142,635 (+)Ensembl
GRCm38.p6 Ensembl11119,238,718 - 119,251,809 (+)Ensembl
Ensembl Acc Id: ENSMUST00000155683
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11119,150,592 - 119,153,946 (+)Ensembl
GRCm38.p6 Ensembl11119,259,766 - 119,263,120 (+)Ensembl
Ensembl Acc Id: ENSMUST00000235971   ⟹   ENSMUSP00000158198
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11119,119,398 - 119,156,038 (+)Ensembl
GRCm38.p6 Ensembl11119,228,572 - 119,265,212 (+)Ensembl
Ensembl Acc Id: ENSMUST00000236813   ⟹   ENSMUSP00000158069
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11119,119,424 - 119,156,064 (+)Ensembl
GRCm38.p6 Ensembl11119,228,598 - 119,265,238 (+)Ensembl
RefSeq Acc Id: NM_001364767   ⟹   NP_001351696
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911119,119,933 - 119,156,064 (+)NCBI
GRCm3811119,228,572 - 119,265,238 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001408391   ⟹   NP_001395320
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911119,119,933 - 119,156,064 (+)NCBI
RefSeq Acc Id: NM_001408393   ⟹   NP_001395322
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911119,119,933 - 119,156,064 (+)NCBI
RefSeq Acc Id: NM_001408394   ⟹   NP_001395323
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911119,149,781 - 119,156,064 (+)NCBI
RefSeq Acc Id: NM_001408395   ⟹   NP_001395324
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911119,149,781 - 119,153,729 (+)NCBI
RefSeq Acc Id: XM_006532698   ⟹   XP_006532761
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911119,119,374 - 119,156,074 (+)NCBI
GRCm3811119,228,547 - 119,265,248 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030245744   ⟹   XP_030101604
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911119,129,033 - 119,156,074 (+)NCBI
GRCm3811119,238,207 - 119,265,248 (+)NCBI
Sequence:
RefSeq Acc Id: XR_388387
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911119,119,328 - 119,145,257 (+)NCBI
GRCm3811119,228,490 - 119,254,431 (+)NCBI
Sequence:
RefSeq Acc Id: XP_006532761   ⟸   XM_006532698
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001351696   ⟸   NM_001364767
- Peptide Label: isoform 1
- UniProtKB: A0A494BAF9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030101604   ⟸   XM_030245744
- Peptide Label: isoform X2
Ensembl Acc Id: ENSMUSP00000158069   ⟸   ENSMUST00000236813
Ensembl Acc Id: ENSMUSP00000062198   ⟸   ENSMUST00000053440
Ensembl Acc Id: ENSMUSP00000158198   ⟸   ENSMUST00000235971
RefSeq Acc Id: NP_001395320   ⟸   NM_001408391
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001395322   ⟸   NM_001408393
- Peptide Label: isoform 3
- UniProtKB: Q8BI79 (UniProtKB/Swiss-Prot),   Q5U4C0 (UniProtKB/Swiss-Prot),   A2AFL0 (UniProtKB/Swiss-Prot),   Q8BI59 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001395323   ⟸   NM_001408394
- Peptide Label: isoform 4
- UniProtKB: Q8BI54 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001395324   ⟸   NM_001408395
- Peptide Label: isoform 5

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BI79-F1-model_v2 AlphaFold Q8BI79 1-1192 view protein structure

Promoters
RGD ID:6820550
Promoter ID:MM_KWN:10819
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   Brain,   Kidney,   Liver,   Lung
Transcripts:NM_172443,   NM_175430,   OTTMUST00000008890,   OTTMUST00000077563,   OTTMUST00000077564,   OTTMUST00000077565,   OTTMUST00000077566,   UC007MQB.1,   UC007MQD.1,   UC007MQE.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3611119,089,551 - 119,090,051 (+)MPROMDB
RGD ID:6820548
Promoter ID:MM_KWN:10820
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell
Transcripts:OTTMUST00000008892
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3611119,099,416 - 119,100,502 (+)MPROMDB
RGD ID:6820549
Promoter ID:MM_KWN:10822
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Lung,   MEF_B6
Transcripts:OTTMUST00000008891,   OTTMUST00000077560
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3611119,119,919 - 119,120,419 (+)MPROMDB
RGD ID:8677590
Promoter ID:EPDNEW_M16826
Type:initiation region
Name:Ccdc40_2
Description:Mus musculus coiled-coil domain containing 40 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M16827  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3811119,228,508 - 119,228,568EPDNEW
RGD ID:8677592
Promoter ID:EPDNEW_M16827
Type:initiation region
Name:Ccdc40_1
Description:Mus musculus coiled-coil domain containing 40 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M16826  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3811119,229,051 - 119,229,111EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2443893 AgrOrtholog
Ensembl Genes ENSMUSG00000039963 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000053440.8 UniProtKB/Swiss-Prot
  ENSMUST00000126652 ENTREZGENE
  ENSMUST00000236813 ENTREZGENE
InterPro CCDC40 UniProtKB/Swiss-Prot
MGD MGI:2443893 ENTREZGENE
NCBI Gene 207607 ENTREZGENE
PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 40 UniProtKB/Swiss-Prot
  PTHR16275 UniProtKB/Swiss-Prot
Pfam BRE1 UniProtKB/Swiss-Prot
PhenoGen Ccdc40 PhenoGen
UniProt A0A494BAF9 ENTREZGENE, UniProtKB/TrEMBL
  A0A494BAV6_MOUSE UniProtKB/TrEMBL
  A2AFL0 ENTREZGENE
  CCD40_MOUSE UniProtKB/Swiss-Prot
  Q5U4C0 ENTREZGENE
  Q8BI54 ENTREZGENE, UniProtKB/TrEMBL
  Q8BI59 ENTREZGENE
  Q8BI79 ENTREZGENE
UniProt Secondary A2AFL0 UniProtKB/Swiss-Prot
  Q5U4C0 UniProtKB/Swiss-Prot
  Q8BI59 UniProtKB/Swiss-Prot