Atg4b (autophagy related 4B, cysteine peptidase)

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Gene: Atg4b (autophagy related 4B, cysteine peptidase) Mus musculus

Analyze

Symbol:

Atg4b

Name:

autophagy related 4B, cysteine peptidase

RGD ID:

1558262

MGI Page

MGI

Description:

Enables cysteine-type peptidase activity. Involved in several processes, including autophagosome assembly; otolith mineralization completed early in development; and protein delipidation. Located in cytoplasm. Is expressed in central nervous system; genitourinary system; gut; lymph node; and sensory organ. Orthologous to human ATG4B (autophagy related 4B cysteine peptidase).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

2510009N07Rik; Apg; APG4 (ATG4) autophagy-related homolog B; Apg4b; Atg4bl; AUT-like 1 cysteine endopeptidase; AUT-like 1, cysteine endopeptidase; Autl1; autophagin 1; autophagin-1; autophagy-related 4B; autophagy-related 4B-like; autophagy-related cysteine endopeptidase 1; autophagy-related protein 4 homolog B; AW048066; cysteine protease ATG4B; cysteine protease involved in autophagy APG4-B; expressed sequence AW048066; MmAPG4B

RGD Orthologs

Human

Rat

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ATG4B (autophagy related 4B cysteine peptidase)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, Panther, Treefam
Rattus norvegicus (Norway rat):	Atg4b (autophagy related 4B, cysteine peptidase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Atg4b (autophagy related 4B cysteine peptidase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ATG4B (autophagy related 4B cysteine peptidase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ATG4B (autophagy related 4B cysteine peptidase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Atg4b (autophagy related 4B cysteine peptidase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ATG4B (autophagy related 4B cysteine peptidase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ATG4B (autophagy related 4B cysteine peptidase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Atg4b (autophagy related 4B cysteine peptidase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Atg4b (autophagy related 4B, cysteine peptidase)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	ATG4B (autophagy related 4B cysteine peptidase)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	atg4b (autophagy related 4B, cysteine peptidase)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid\|ZFIN)
Saccharomyces cerevisiae (baker's yeast):	ATG4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Atg4a	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	atg-4.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	atg4b	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Related Pseudogenes:

Gm2774

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	93,682,627 - 93,717,328 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	93,679,222 - 93,718,332 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	93,754,905 - 93,789,606 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	93,751,500 - 93,790,610 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	95,651,610 - 95,686,106 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	95,585,439 - 95,619,935 (+)	NCBI		MGSCv36	mm8
Celera	1	96,712,297 - 96,733,524 (+)	NCBI		Celera
Cytogenetic Map	1	D	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Bethlem Myopathy 1 (ISO)

chromosome 2q37 deletion syndrome (ISO)

D-2-hydroxyglutaric aciduria 1 (ISO)

genetic disease (ISO)

hereditary spastic paraplegia 30 (ISO)

intellectual disability (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-anisomycin (ISO)

(1->4)-beta-D-glucan (EXP)

1,2-dimethylhydrazine (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (ISO)

2-deoxy-D-glucose (ISO)

2-methylcholine (ISO)

3-methyladenine (EXP)

acrolein (ISO)

alpha-pinene (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

atrazine (EXP)

cannabidiol (EXP)

Cannabidivarin (EXP)

carbon nanotube (EXP)

clobetasol (EXP)

cocaine (ISO)

deoxynivalenol (ISO)

dieldrin (ISO)

dinitrogen (ISO)

doxorubicin (ISO)

enzyme inhibitor (ISO)

ethanol (EXP)

ivermectin (ISO)

lycopene (EXP)

methotrexate (ISO)

oxaliplatin (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

paraquat (EXP)

perfluorooctane-1-sulfonic acid (EXP)

phenobarbital (EXP)

pirinixic acid (EXP)

rotenone (EXP)

silicon dioxide (ISO)

sirolimus (EXP,ISO)

sodium arsenite (EXP)

sodium fluoride (EXP)

tert-butyl hydroperoxide (ISO)

topotecan (ISO)

triptonide (EXP)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

autophagosome assembly (IMP)

autophagy (IMP,ISO)

cellular response to starvation (IMP)

lysosomal microautophagy (ISO)

mitophagy (ISO)

otolith mineralization completed early in development (IMP)

positive regulation of protein catabolic process (ISO)

protein delipidation (IDA,ISO)

protein localization to phagophore assembly site (ISO)

protein transport (IEA)

proteolysis (ISO)

selective autophagy (ISO)

Cellular Component

cytoplasm (IDA)

cytoplasmic vesicle (IEA)

endoplasmic reticulum (IEA)

mitochondrion (IEA)

Molecular Function

Atg8-specific peptidase activity (ISO)

cysteine-type peptidase activity (IDA,ISO,TAS)

endopeptidase activity (ISO)

hydrolase activity (IEA)

peptidase activity (IDA)

protein binding (IPI)

scaffold protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

autophagy pathway (IEA,ISO)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal cerebellum deep nucleus morphology (IAGP)

abnormal lipid homeostasis (IAGP)

abnormal motor learning (IAGP)

abnormal otolith morphology (IAGP)

abnormal retina morphology (IEA)

abnormal tooth morphology (IEA)

abnormal utricle morphology (IAGP)

abnormal vestibular saccular macula morphology (IAGP)

absent otoliths (IAGP)

cataract (IEA)

circling (IAGP)

decreased circulating cholesterol level (IEA)

decreased circulating HDL cholesterol level (IEA)

decreased circulating serum albumin level (IEA)

decreased circulating total protein level (IEA)

decreased lean body mass (IEA)

decreased prepulse inhibition (IEA)

enlarged otoliths (IAGP)

head tilt (IAGP)

impaired autophagy (IAGP)

impaired coordination (IAGP)

impaired swimming (IAGP)

increased circulating alanine transaminase level (IEA)

increased circulating alkaline phosphatase level (IEA)

limb grasping (IEA)

preweaning lethality, incomplete penetrance (IAGP)

short tibia (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Functional annotation of a full-length mouse cDNA collection.	Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2.	MGDs mouse GO annotations	MGD data from the GO Consortium
3.	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
5.	Mouse MP Annotation Import Pipeline	RGD automated import pipeline
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	LC3 conjugation system in mammalian autophagy.	Tanida I, etal., Int J Biochem Cell Biol. 2004 Dec;36(12):2503-18.

Additional References at PubMed

PMID:8889548	PMID:10349636	PMID:10725249	PMID:10922068	PMID:11042159	PMID:11076861	PMID:12477932	PMID:12904583	PMID:14530254	PMID:14610273	PMID:14621295	PMID:15489334
PMID:15782199	PMID:16141072	PMID:16141073	PMID:16602821	PMID:18083104	PMID:18768752	PMID:18799693	PMID:20577052	PMID:20634410	PMID:21267068	PMID:21551061	PMID:21701497
PMID:21873635	PMID:22025678	PMID:22055344	PMID:23093945	PMID:23585228	PMID:23754749	PMID:23782979	PMID:23861892	PMID:24194600	PMID:25327288	PMID:25578879	PMID:25906080
PMID:25916556	PMID:26235979	PMID:26378241	PMID:26406385	PMID:26649827	PMID:26764599	PMID:26764600	PMID:28287329	PMID:28598240	PMID:29458288	PMID:29706629	PMID:30202015
PMID:32232483	PMID:32325033	PMID:32474761	PMID:33378226	PMID:36056541	PMID:36198274

Genomics

Comparative Map Data

Atg4b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	93,682,627 - 93,717,328 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	93,679,222 - 93,718,332 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	93,754,905 - 93,789,606 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	93,751,500 - 93,790,610 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	95,651,610 - 95,686,106 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	95,585,439 - 95,619,935 (+)	NCBI		MGSCv36	mm8
Celera	1	96,712,297 - 96,733,524 (+)	NCBI		Celera
Cytogenetic Map	1	D	NCBI

ATG4B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	241,637,693 - 241,673,857 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	2	241,637,213 - 241,673,857 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	242,577,108 - 242,613,272 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	242,225,700 - 242,261,945 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	2	236,248,753 - 236,285,072 (+)	NCBI		Celera
Cytogenetic Map	2	q37.3	NCBI
HuRef	2	234,345,804 - 234,368,653 (+)	NCBI		HuRef
CHM1_1	2	242,583,163 - 242,619,336 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	242,141,021 - 242,177,191 (+)	NCBI		T2T-CHM13v2.0

Atg4b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	9	94,282,417 - 94,314,109 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	94,282,509 - 94,314,103 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	102,718,019 - 102,749,586 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	9	107,853,665 - 107,885,062 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	9	106,209,766 - 106,241,168 (+)	NCBI	Rnor_WKY
Rnor_6.0	9	100,888,457 - 100,920,123 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	100,888,501 - 100,918,637 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	100,541,628 - 100,573,277 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	93,054,736 - 93,063,888 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	93,259,504 - 93,268,657 (+)	NCBI
Celera	9	91,839,255 - 91,848,407 (+)	NCBI		Celera
Cytogenetic Map	9	q36	NCBI

Atg4b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955542	166,365 - 193,006 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955542	164,969 - 192,498 (-)	NCBI	ChiLan1.0	ChiLan1.0

ATG4B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	2B	144,360,188 - 144,395,867 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	128,913,323 - 128,950,112 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	247,702,880 - 247,738,985 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	247,702,880 - 247,738,977 (+)	Ensembl	panpan1.1		panPan2

ATG4B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	51,494,316 - 51,518,683 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	25	51,504,537 - 51,517,659 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	51,712,749 - 51,737,119 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	51,692,391 - 51,716,772 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	25	51,693,855 - 51,716,770 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	25	51,542,261 - 51,566,633 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	51,281,435 - 51,305,797 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	51,558,118 - 51,582,492 (+)	NCBI		UU_Cfam_GSD_1.0

Atg4b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	192,904,801 - 192,928,109 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936745	292,746 - 307,746 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936745	291,311 - 308,469 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ATG4B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	140,223,904 - 140,246,321 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	140,223,903 - 140,245,590 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

ATG4B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	127,689,577 - 127,720,232 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666040	71,603,345 - 71,632,928 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Atg4b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624847	5,605,844 - 5,629,891 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624847	5,605,818 - 5,629,729 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Atg4b
1285 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	1095
Count of miRNA genes:	570
Interacting mature miRNAs:	700
Transcripts:	ENSMUST00000027502, ENSMUST00000135762, ENSMUST00000149436
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
13824984	Twq5_m	testis weight QTL 5 (mouse)					1	3069992	184732197	Mouse
11039528	Ccc3_m	colitis susceptibility in the Collaborative Cross 3 (mouse)					1	3680142	195051546	Mouse
1357753	Kidq2_m	kidney weight QTL 2 (mouse)			Not determined		1	34760138	150193871	Mouse
1357488	Splq3_m	spleen weight QTL 3 (mouse)			Not determined		1	34760138	150193871	Mouse
1558860	W10q7_m	weight 10 weeks QTL 7 (mouse)			Not determined		1	34760138	150193871	Mouse
1357721	Sle17_m	systematic lupus erythematosus susceptibility 17 (mouse)			Not determined		1	39132808	126445310	Mouse
1301722	Cia9_m	collagen induced arthritis QTL 9 (mouse)			Not determined		1	45783900	189303617	Mouse
4142291	Aec2_m	autoimmune exocrinopathy 2 (mouse)			Not determined			52457737	182250592	Mouse
1301748	Abbp1_m	A/J and C57BL/6 blood pressure 1 (mouse)			Not determined		1	62946755	120529678	Mouse
10412185	Hcs9_m	hepatocarcinogenesis susceptibility 9 (mouse)			Not determined		1	63854690	189303617	Mouse
1300841	Ssial1_m	susceptibility to sialadenitis 1 (mouse)			Not determined		1	63920002	153557562	Mouse
27095918	Ulnl1_m	ulna length 1, 5 week (mouse)					1	67339159	129727737	Mouse
1302146	Cocrb1_m	cocaine related behavior 1 (mouse)			Not determined		1	70133533	104139557	Mouse
1300976	Bmd19_m	bone mineral density 19 (mouse)			Not determined		1	73266214	108838414	Mouse
4142394	Mssq1_m	mandible size and shape QTL 1 (mouse)			Not determined			73615692	107615830	Mouse
1301304	Hrq3_m	heart rate quantitative locus 3 (mouse)			Not determined		1	73615692	107615830	Mouse
1300989	Lrdg1_m	light induced retinal degeneration 1 (mouse)			Not determined		1	73755175	147125370	Mouse
4141914	Gcsfis_m	G-CSF induced splenomegaly (mouse)			Not determined			74516235	148715579	Mouse
1357847	Jckm2_m	juvenile cystic kidney modifier 2 (mouse)			Not determined		1	74991977	133290937	Mouse
27095931	Pglq1_m	pelvic girdle length QTL 1, 5 week (mouse)					1	75976637	128527737	Mouse
27095928	Pglq6_m	pelvic girdle length QTL 6, 10 week (mouse)					1	75976637	148775742	Mouse
26884448	Sklq1_m	skull length QTL 1, 5 week (mouse)					1	75976637	181327565	Mouse
1558928	Mord2_m	modifier of retinal degeneration 2 (mouse)			Not determined		1	77123115	110536075	Mouse
14697706	Stsl3a_m	Salmonella typhimurium susceptibility locus 3a (mouse)					1	77476637	95827725	Mouse
4141725	Wbcq4_m	white blood cell quantitative locus 4 (mouse)			Not determined		1	79858683	113858791	Mouse
12050069	Nabq1_m	nasal bone morphology QTL 1 (mouse)					1	79858683	113858791	Mouse
13452395	Leusq2_m	leucocytosis susceptibility QTL 2 (mouse)					1	80245593	126386517	Mouse
1301350	Nidd4k_m	Nidd4 on KK-A (mouse)			Not determined		7	82291982	147125370	Mouse
1357439	Popoa_m	premature ovulation and primary oocyte arrest (mouse)			Not determined		1	82643189	135615379	Mouse
10412238	Alpq5_m	alcohol preference QTL 5 (mouse)			Not determined		1	82832635	116832635	Mouse
12791004	Aath7_m	aortic arch atherosclerosis 7 (mouse)					1	82832635	116832635	Mouse
11667074	Led2_m	late embryonic death 2 (mouse)					1	85696027	117195081	Mouse
12790991	Aath1_m	aortic arch atherosclerosis 1 (mouse)					1	86483929	120483929	Mouse
4141329	Mleu1_m	myeloid leukemia survival 1 (mouse)			Not determined			89786512	123786512	Mouse
15039333	Nmrs1_m	NAFLD-associated magnetic resonance shift 1 (mouse)					1	89786512	123786512	Mouse
4141347	Reb1_m	repetitive behavior 1 (mouse)			Not determined			91468266	100413667	Mouse
1357760	Synch3_m	synechia 3 (mouse)			Not determined		1	92901442	126901550	Mouse
4141627	Bwq7_m	body weight, QTL 7 (mouse)			Not determined		1	92940909	124497796	Mouse
12879491	Hfnq1_m	hair follicle number QTL 1 (mouse)					1	93310310	123636759	Mouse
10045976	Tir6_m	trypanosome infection response 6 (mouse)			Not determined		1	93536855	120529678	Mouse

Markers in Region

UniSTS:234179

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	1	93,789,083 - 93,789,327	UniSTS	GRCm38
MGSCv37	1	95,685,660 - 95,685,904	UniSTS	GRCm37
Celera	1	96,733,077 - 96,733,322	UniSTS
Cytogenetic Map	1	D	UniSTS

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001368266	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_174874	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006529793	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_036152886	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_036152889	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_004934055	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC162891	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AJ504653	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK010949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK028712	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK031570	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK075796	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK088811	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK129242	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK144239	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK177112	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK188147	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK192641	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK199162	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK204065	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC027184	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466520	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CJ155817	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000027502 ⟹ ENSMUSP00000027502

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	93,682,627 - 93,718,332 (+)	Ensembl
GRCm38.p6 Ensembl	1	93,754,905 - 93,790,610 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000135762

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	93,682,767 - 93,715,901 (+)	Ensembl
GRCm38.p6 Ensembl	1	93,755,045 - 93,788,179 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000149436 ⟹ ENSMUSP00000123383

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	93,679,222 - 93,703,405 (+)	Ensembl
GRCm38.p6 Ensembl	1	93,751,500 - 93,775,683 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000185482 ⟹ ENSMUSP00000140758

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	93,682,757 - 93,712,645 (+)	Ensembl
GRCm38.p6 Ensembl	1	93,755,035 - 93,784,923 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000185754

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	93,713,940 - 93,715,621 (+)	Ensembl
GRCm38.p6 Ensembl	1	93,786,218 - 93,787,899 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000186001

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	93,695,799 - 93,703,170 (+)	Ensembl
GRCm38.p6 Ensembl	1	93,768,077 - 93,775,448 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000186124

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	93,713,305 - 93,714,302 (+)	Ensembl
GRCm38.p6 Ensembl	1	93,785,583 - 93,786,580 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000186811 ⟹ ENSMUSP00000139463

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	93,712,519 - 93,715,599 (+)	Ensembl
GRCm38.p6 Ensembl	1	93,784,797 - 93,787,877 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000187824 ⟹ ENSMUSP00000139541

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	93,682,710 - 93,706,010 (+)	Ensembl
GRCm38.p6 Ensembl	1	93,754,988 - 93,778,288 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000189152

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	93,682,884 - 93,695,822 (+)	Ensembl
GRCm38.p6 Ensembl	1	93,755,162 - 93,768,100 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000189872

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	93,712,065 - 93,712,803 (+)	Ensembl
GRCm38.p6 Ensembl	1	93,784,343 - 93,785,081 (+)	Ensembl

RefSeq Acc Id:

NM_001368266 ⟹ NP_001355195

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	1	93,682,627 - 93,717,328 (+)	NCBI
GRCm38	1	93,754,905 - 93,789,606 (+)	NCBI

Sequence:

show sequence

GCGTGCCCACCGCCGTACGGCGAGATGGCGACGCCCGCGCTTCCGCTGCGCCGCGCTTGGCTGC
CGCGGCTTCCCGTCGCCGTGTCGCGCAGTAGTCCGTCGGAGCGACGGCACGGTCAGTCGGCAGC
CGGACAGGGAAGATGGACGCAGCCACTTTGACATATGATACTCTCCGGTTTGCTGAATTTGAAG
ATTTCCCTGAGACCTCAGAGCCTGTTTGGATTCTGGGCAGAAAATACAGCATTTTCACAGAGAA
GGACGAAATCTTGTCTGATGTTGCATCCAGACTTTGGTTTACATACAGGAGAAACTTTCCAGCT
ATTGATTGGAGGTGGACTCAGCGGAAGAGGCAGCCTGACAGCTACTTTAATGTCCTCAATGCTT
TCCTCGACAGGAAGGACAGCTACTATTCCATCCATCAGATAGCGCAAATGGGAGTTGGCGAAGG
CAAGTCTATAGGCCAGTGGTACGGGCCGAACACTGTTGCCCAGGTCCTCAAGAAACTTGCTGTA
TTCGACACATGGAGTTCCTTGGCTGTTCACATAGCAATGGACAACACTGTGGTGATGGAGGAAA
TCAGAAGGTTATGCAGGGCCAACCTTCCCTGTGTTGGGGCGGCTGCACTTCCTACTGATTCAGA
GAGGCACTGTAATGGGTTCCCTGCTGGAGCTGAAGTCACCAACAGGCCATCGGCTTGGAGACCA
CTAGTGCTTCTCATCCCTCTCCGCCTGGGACTGACAGACATCAATGAGGCCTATGTGGAGACGC
TGAAGCACTGTTTCATGATGCCCCAGTCCCTGGGTGTTATTGGAGGGAAGCCCAACAGTGCCCA
CTACTTTATTGGCTATGTTGGGGAGGAGCTCATCTATCTGGACCCCCACACTACACAGCCTGCA
GTGGAGCTGACTGACAGCTGCTTCATCCCCGACGAGAGCTTCCACTGCCAGCACCCTCCCTCTA
GGATGGGCATTGGAGAGCTTGACCCGTCCATTGCTGTGGGGTTTTTCTGTAAGACGGAGGAAGA
CTTTAACGACTGGTGTCAGCAAGTCAAAAAGCTATCCCAGCTTGGAGGTGCCCTGCCCATGTTT
GAGCTGGTGGAACAGCAGCCTTCCCATCTGGCCTGCCAGGATGTCCTGAACCTGTCCCTAGACT
CTTCTGATGTAGAGAGACTGGAGAGGTTTTTTGACTCTGAGGATGAAGACTTTGAAATCTTATC
CCTCTGAAAATCCTGGGGTTGGGGGATGGCCTCCATGGCCCTCATTGGGGTGCTTTGAGAACCC
AGACCTGCCTTGGGCACTCAGTGTCACCGCATTCCATCCACCCAGCCCATCCCTGCCAAGTGCT
GTTCACCTGTGCCACCTCTGTCCCGAGGGCCTGCTCTGCTCATGGACCAAGGACTATGGTGCCT
GGAGGCCTTAATGCTTGGAGTCAGACTGCCTAAACCCCAACACAAAGGGCCTGTCCACATGAAG
TCGCTCATCAGAAGGCCTAGTCAGGAAGAGCAGTGGGTCAGGAGCTTCCAGAATTCTCCACTGG
ATTCTGACACTGCCAGCCCTGGTCAGCACATCAGCTTTGGTTCTGCTTTCTCCTGGGCACCTGG
GTCTGTGGTTTATTTGGAATTAAAGCCCTGTTTGAAGTTGTTTAACAAAGACATGAATTTCTGG
GGCACTTCCCAGGTCAGTCTTAGACGATCTGCAGGTTATGTACAGAGTGACAGCCACATCATGG
CCTCATACTGCTGGGCGGGGTGAGCTTTGGGCTGTCTCCTCTGCCCAGTGTGATTTATCAAGGG
CTACCTCAGTGGGAAAGCATATGGAGAGAATCCCAAGGCTGCTACTTGCTTTGGAGAGAAAGTA
TTCTTGTGGGGCATTTGGAAAATCCAAAGATATCAGTGTGCATGGGCACAGGATGGACCCCTGA
ACCCTGGAGCAACTGACAAGCTCCTAGGGCTTCTGGAGTTGTGGTCCTGGGATTCCCCATTAGG
ACCTCGCTAGGGAAGAGAGAGGTTTCCTCTGTGGGGTTGATGCGTTTCATGACACACCGCCTGC
TGCTTTTAGCGTGCCACCCAGCTTCCCTCTGGGAGGAAAGGGAAGGGAGCAGAGCTGCTCTATG
CTTGAGACACCGTGCCCACTGGTGGTAGGGTACACACTGCTACTTGAGCCTTCCTCCATGTTCT
TTCTCTTCTCAGAAACCCATCTGGGTCACAGGAAATTGTAGATGGTTTGGGGCCAAAAAGGTAA
AAGTACTACAGCTTTTTGGTGCACAATAGACATTTAGACAGCAGGTAGCTCCAGGCACTCACAA
GTGAAGAGTTCAGACCTCCTTGGCACTCATTTCCATACCTGCCACCTAACCCTGGCTTTCTGGG
CCTTCAAGCTTTTGATGCTCTAGGTCTGCTGTCTTAGAAAAACACCTTTCCTCCCCCTAGATAT
GAGCAGAGTATGGCAGTGTGGGGAGGACCGTTCAAGAGCCTTTGCTAAAAGCCCTTCCCAAGAA
CTCGCAGATGGGTGAGGCCAGAGCTACTCCAGATGCAGCAGCTCTAAGTAGCCCACAAGGTAGC
AAGAGATCCCTGCCTATCAAGTGTTGAAGACATATTTATTTCATCTTACTCTTTCTCTCCCATA
TCTTGTCCCTTGACTTCAGATGGGGTGGGACGGGGGGGGGGGAAAGGCCAGGACAGTTTCCATT
CCCCCGGAGCTTGTTTCCTGAGGCCAGGAGCTATTGTGCTGCTGTCGCCCAGGGTCTCGCTGTA
ACTCCTGTTGTTGGTAGTAAGGGGTGGACATATGGAACACTACAACCTGAGGGAACTCTCAGGG
CTTGAGAAAGGCTTCCTGAGGTTGTTCATTCTTAGTGTAGTTTGCAATTCTTAATGATAAATAA
GTTTCAGTAGAAAACAAAGTCTTGTGTGTGTGTGTTGATTTTTTTTCCCCTCCAGTTATGATTA
GCTTTGATTTTAGTGTTAACAAGTAAAGACTTCCTGAAGTTGGACAAGCAGATCCTGCCCTGTT
CCTGGCCTTGCTGTGTAGCCAATGTCTGTTTTCCCTCATATTAAACTCATGGTCCTAAAAAA

hide sequence

RefSeq Acc Id:

NM_174874 ⟹ NP_777363

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	1	93,682,627 - 93,717,328 (+)	NCBI
GRCm38	1	93,754,905 - 93,789,606 (+)	NCBI
MGSCv37	1	95,651,610 - 95,686,106 (+)	RGD
Celera	1	96,712,297 - 96,733,524 (+)	RGD
cM Map	1		ENTREZGENE

Sequence:

show sequence

GCGTGCCCACCGCCGTACGGCGAGATGGCGACGCCCGCGCTTCCGCTGCGCCGCGCTTGGCTGC
CGCGGCTTCCCGTCGCCGTGTCGCGCAGTAGTCCGTCGGAGCGACGGCACGGTCAGTCGGCAGC
CGGACAGGGAAGATGGACGCAGCCACTTTGACATATGATACTCTCCGGTTTGCTGAATTTGAAG
ATTTCCCTGAGACCTCAGAGCCTGTTTGGATTCTGGGCAGAAAATACAGCATTTTCACAGAGAA
GGACGAAATCTTGTCTGATGTTGCATCCAGACTTTGGTTTACATACAGGAGAAACTTTCCAGCT
ATTGGGGGAACTGGCCCTACTTCAGACACAGGCTGGGGTTGCATGCTTCGGTGTGGACAGATGA
TCTTTGCCCAGGCCCTGGTATGCCGGCACTTAGGTCGAGATTGGAGGTGGACTCAGCGGAAGAG
GCAGCCTGACAGCTACTTTAATGTCCTCAATGCTTTCCTCGACAGGAAGGACAGCTACTATTCC
ATCCATCAGATAGCGCAAATGGGAGTTGGCGAAGGCAAGTCTATAGGCCAGTGGTACGGGCCGA
ACACTGTTGCCCAGGTCCTCAAGAAACTTGCTGTATTCGACACATGGAGTTCCTTGGCTGTTCA
CATAGCAATGGACAACACTGTGGTGATGGAGGAAATCAGAAGGTTATGCAGGGCCAACCTTCCC
TGTGTTGGGGCGGCTGCACTTCCTACTGATTCAGAGAGGCACTGTAATGGGTTCCCTGCTGGAG
CTGAAGTCACCAACAGGCCATCGGCTTGGAGACCACTAGTGCTTCTCATCCCTCTCCGCCTGGG
ACTGACAGACATCAATGAGGCCTATGTGGAGACGCTGAAGCACTGTTTCATGATGCCCCAGTCC
CTGGGTGTTATTGGAGGGAAGCCCAACAGTGCCCACTACTTTATTGGCTATGTTGGGGAGGAGC
TCATCTATCTGGACCCCCACACTACACAGCCTGCAGTGGAGCTGACTGACAGCTGCTTCATCCC
CGACGAGAGCTTCCACTGCCAGCACCCTCCCTCTAGGATGGGCATTGGAGAGCTTGACCCGTCC
ATTGCTGTGGGGTTTTTCTGTAAGACGGAGGAAGACTTTAACGACTGGTGTCAGCAAGTCAAAA
AGCTATCCCAGCTTGGAGGTGCCCTGCCCATGTTTGAGCTGGTGGAACAGCAGCCTTCCCATCT
GGCCTGCCAGGATGTCCTGAACCTGTCCCTAGACTCTTCTGATGTAGAGAGACTGGAGAGGTTT
TTTGACTCTGAGGATGAAGACTTTGAAATCTTATCCCTCTGAAAATCCTGGGGTTGGGGGATGG
CCTCCATGGCCCTCATTGGGGTGCTTTGAGAACCCAGACCTGCCTTGGGCACTCAGTGTCACCG
CATTCCATCCACCCAGCCCATCCCTGCCAAGTGCTGTTCACCTGTGCCACCTCTGTCCCGAGGG
CCTGCTCTGCTCATGGACCAAGGACTATGGTGCCTGGAGGCCTTAATGCTTGGAGTCAGACTGC
CTAAACCCCAACACAAAGGGCCTGTCCACATGAAGTCGCTCATCAGAAGGCCTAGTCAGGAAGA
GCAGTGGGTCAGGAGCTTCCAGAATTCTCCACTGGATTCTGACACTGCCAGCCCTGGTCAGCAC
ATCAGCTTTGGTTCTGCTTTCTCCTGGGCACCTGGGTCTGTGGTTTATTTGGAATTAAAGCCCT
GTTTGAAGTTGTTTAACAAAGACATGAATTTCTGGGGCACTTCCCAGGTCAGTCTTAGACGATC
TGCAGGTTATGTACAGAGTGACAGCCACATCATGGCCTCATACTGCTGGGCGGGGTGAGCTTTG
GGCTGTCTCCTCTGCCCAGTGTGATTTATCAAGGGCTACCTCAGTGGGAAAGCATATGGAGAGA
ATCCCAAGGCTGCTACTTGCTTTGGAGAGAAAGTATTCTTGTGGGGCATTTGGAAAATCCAAAG
ATATCAGTGTGCATGGGCACAGGATGGACCCCTGAACCCTGGAGCAACTGACAAGCTCCTAGGG
CTTCTGGAGTTGTGGTCCTGGGATTCCCCATTAGGACCTCGCTAGGGAAGAGAGAGGTTTCCTC
TGTGGGGTTGATGCGTTTCATGACACACCGCCTGCTGCTTTTAGCGTGCCACCCAGCTTCCCTC
TGGGAGGAAAGGGAAGGGAGCAGAGCTGCTCTATGCTTGAGACACCGTGCCCACTGGTGGTAGG
GTACACACTGCTACTTGAGCCTTCCTCCATGTTCTTTCTCTTCTCAGAAACCCATCTGGGTCAC
AGGAAATTGTAGATGGTTTGGGGCCAAAAAGGTAAAAGTACTACAGCTTTTTGGTGCACAATAG
ACATTTAGACAGCAGGTAGCTCCAGGCACTCACAAGTGAAGAGTTCAGACCTCCTTGGCACTCA
TTTCCATACCTGCCACCTAACCCTGGCTTTCTGGGCCTTCAAGCTTTTGATGCTCTAGGTCTGC
TGTCTTAGAAAAACACCTTTCCTCCCCCTAGATATGAGCAGAGTATGGCAGTGTGGGGAGGACC
GTTCAAGAGCCTTTGCTAAAAGCCCTTCCCAAGAACTCGCAGATGGGTGAGGCCAGAGCTACTC
CAGATGCAGCAGCTCTAAGTAGCCCACAAGGTAGCAAGAGATCCCTGCCTATCAAGTGTTGAAG
ACATATTTATTTCATCTTACTCTTTCTCTCCCATATCTTGTCCCTTGACTTCAGATGGGGTGGG
ACGGGGGGGGGGGAAAGGCCAGGACAGTTTCCATTCCCCCGGAGCTTGTTTCCTGAGGCCAGGA
GCTATTGTGCTGCTGTCGCCCAGGGTCTCGCTGTAACTCCTGTTGTTGGTAGTAAGGGGTGGAC
ATATGGAACACTACAACCTGAGGGAACTCTCAGGGCTTGAGAAAGGCTTCCTGAGGTTGTTCAT
TCTTAGTGTAGTTTGCAATTCTTAATGATAAATAAGTTTCAGTAGAAAACAAAGTCTTGTGTGT
GTGTGTTGATTTTTTTTCCCCTCCAGTTATGATTAGCTTTGATTTTAGTGTTAACAAGTAAAGA
CTTCCTGAAGTTGGACAAGCAGATCCTGCCCTGTTCCTGGCCTTGCTGTGTAGCCAATGTCTGT
TTTCCCTCATATTAAACTCATGGTCCTAAAAAA

hide sequence

RefSeq Acc Id:

XM_006529793 ⟹ XP_006529856

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	1	93,682,874 - 93,717,156 (+)	NCBI
GRCm38	1	93,755,150 - 93,789,434 (+)	NCBI

Sequence:

show sequence

CGCAGCGCTCAGTACCGGGTTCGCGGGGCCACTCGTCAGCGCCTCGGCCTCCGGCGCTCGGCCG
CGGCCCTCGGGGAGCGTCCCAGCCTGTGGGCTCGCGGCTGCGGGCGTGAGGGCAGGGAGTCTGA
GGGACGCATCAGGACGCGGGCACCCTGGTGCCCGGAGAGGACCGGTGCGCCGCGAGGGTGGGCC
TTGCGGTGTCCATTGAAGAGCCGACCTCTTTAACTTCTGTCAAGTTGTTGGCCGCTGGTCCAGC
TACCACAACATGCACATCTTTTGTCTTTGAAGTTCAATAACCTGTGTAGCCACTTTGACATATG
ATACTCTCCGGTTTGCTGAATTTGAAGATTTCCCTGAGACCTCAGAGCCTGTTTGGATTCTGGG
CAGAAAATACAGCATTTTCACAGAGAAGGACGAAATCTTGTCTGATGTTGCATCCAGACTTTGG
TTTACATACAGGAGAAACTTTCCAGCTATTGGGGGAACTGGCCCTACTTCAGACACAGGCTGGG
GTTGCATGCTTCGGTGTGGACAGATGATCTTTGCCCAGGCCCTGGTATGCCGGCACTTAGGTCG
AGATTGGAGGTGGACTCAGCGGAAGAGGCAGCCTGACAGCTACTTTAATGTCCTCAATGCTTTC
CTCGACAGGAAGGACAGCTACTATTCCATCCATCAGATAGCGCAAATGGGAGTTGGCGAAGGCA
AGTCTATAGGCCAGTGGTACGGGCCGAACACTGTTGCCCAGGTCCTCAAGAAACTTGCTGTATT
CGACACATGGAGTTCCTTGGCTGTTCACATAGCAATGGACAACACTGTGGTGATGGAGGAAATC
AGAAGGTTATGCAGGGCCAACCTTCCCTGTGTTGGGGCGGCTGCACTTCCTACTGATTCAGAGA
GGCACTGTAATGGGTTCCCTGCTGGAGCTGAAGTCACCAACAGGCCATCGGCTTGGAGACCACT
AGTGCTTCTCATCCCTCTCCGCCTGGGACTGACAGACATCAATGAGGCCTATGTGGAGACGCTG
AAGCACTGTTTCATGATGCCCCAGTCCCTGGGTGTTATTGGAGGGAAGCCCAACAGTGCCCACT
ACTTTATTGGCTATGTTGGGGAGGAGCTCATCTATCTGGACCCCCACACTACACAGCCTGCAGT
GGAGCTGACTGACAGCTGCTTCATCCCCGACGAGAGCTTCCACTGCCAGCACCCTCCCTCTAGG
ATGGGCATTGGAGAGCTTGACCCGTCCATTGCTGTGGGGTTTTTCTGTAAGACGGAGGAAGACT
TTAACGACTGGTGTCAGCAAGTCAAAAAGCTATCCCAGCTTGGAGGTGCCCTGCCCATGTTTGA
GCTGGTGGAACAGCAGCCTTCCCATCTGGCCTGCCAGGATGTCCTGAACCTGTCCCTAGACTCT
TCTGATGTAGAGAGACTGGAGAGGTTTTTTGACTCTGAGGATGAAGACTTTGAAATCTTATCCC
TCTGAAAATCCTGGGGTTGGGGGATGGCCTCCATGGCCCTCATTGGGGTGCTTTGAGAACCCAG
ACCTGCCTTGGGCACTCAGTGTCACCGCATTCCATCCACCCAGCCCATCCCTGCCAAGTGCTGT
TCACCTGTGCCACCTCTGTCCCGAGGGCCTGCTCTGCTCATGGACCAAGGACTATGGTGCCTGG
AGGCCTTAATGCTTGGAGTCAGACTGCCTAAACCCCAACACAAAGGGCCTGTCCACATGAAGTC
GCTCATCAGAAGGCCTAGTCAGGAAGAGCAGTGGGTCAGGAGCTTCCAGAATTCTCCACTGGAT
TCTGACACTGCCAGCCCTGGTCAGCACATCAGCTTTGGTTCTGCTTTCTCCTGGGCACCTGGGT
CTGTGGTTTATTTGGAATTAAAGCCCTGTTTGAAGTTGTTTAACAAAGACATGAATTTCTGGGG
CACTTCCCAGGTCAGTCTTAGACGATCTGCAGGTTATGTACAGAGTGACAGCCACATCATGGCC
TCATACTGCTGGGCGGGGTGAGCTTTGGGCTGTCTCCTCTGCCCAGTGTGATTTATCAAGGGCT
ACCTCAGTGGGAAAGCATATGGAGAGAATCCCAAGGCTGCTACTTGCTTTGGAGAGAAAGTATT
CTTGTGGGGCATTTGGAAAATCCAAAGATATCAGTGTGCATGGGCACAGGATGGACCCCTGAAC
CCTGGAGCAACTGACAAGCTCCTAGGGCTTCTGGAGTTGTGGTCCTGGGATTCCCCATTAGGAC
CTCGCTAGGGAAGAGAGAGGTTTCCTCTGTGGGGTTGATGCGTTTCATGACACACCGCCTGCTG
CTTTTAGCGTGCCACCCAGCTTCCCTCTGGGAGGAAAGGGAAGGGAGCAGAGCTGCTCTATGCT
TGAGACACCGTGCCCACTGGTGGTAGGGTACACACTGCTACTTGAGCCTTCCTCCATGTTCTTT
CTCTTCTCAGAAACCCATCTGGGTCACAGGAAATTGTAGATGGTTTGGGGCCAAAAAGGTAAAA
GTACTACAGCTTTTTGGTGCACAATAGACATTTAGACAGCAGGTAGCTCCAGGCACTCACAAGT
GAAGAGTTCAGACCTCCTTGGCACTCATTTCCATACCTGCCACCTAACCCTGGCTTTCTGGGCC
TTCAAGCTTTTGATGCTCTAGGTCTGCTGTCTTAGAAAAACACCTTTCCTCCCCCTAGATATGA
GCAGAGTATGGCAGTGTGGGGAGGACCGTTCAAGAGCCTTTGCTAAAAGCCCTTCCCAAGAACT
CGCAGATGGGTGAGGCCAGAGCTACTCCAGATGCAGCAGCTCTAAGTAGCCCACAAGGTAGCAA
GAGATCCCTGCCTATCAAGTGTTGAAGACATATTTATTTCATCTTACTCTTTCTCTCCCATATC
TTGTCCCTTGACTTCAGATGGGGTGGGACGGGGGGGGGGGAAAGGCCAGGACAGTTTCCATTCC
CCCGGAGCTTGTTTCCTGAGGCCAGGAGCTATTGTGCTGCTGTCGCCCAGGGTCTCGCTGTAAC
TCCTGTTGTTGGTAGTAAGGGGTGGACATATGGAACACTACAACCTGAGGGAACTCTCAGGGCT
TGAGAAAGGCTTCCTGAGGTTGTTCATTCTTAGTGTAGTTTGCAATTCTTAATGATAAATAAGT
TTCAGTAGAAAACAAA

hide sequence

RefSeq Acc Id:

XM_036152886 ⟹ XP_036008779

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	1	93,682,635 - 93,717,156 (+)	NCBI

Sequence:

show sequence

ACCGCCGTACGGCGAGATGGCGACGCCCGCGCTTCCGCTGCGCCGCGCTTGGCTGCCGCGGCTT
CCCGTCGCCGTGTCGCGCAGTAGTCCGTCGGAGCGACGGCACGGTCAGTCGGCAGCCGGACAGG
GAAGATGGACGCAGCCACTTTGACATATGATACTCTCCGGTTTGCTGAATTTGAAGATTTCCCT
GAGACCTCAGAGCCTGTTTGGATTCTGGGCAGAAAATACAGCATTTTCACAGAGAAGGACGAAA
TCTTGTCTGATGTTGCATCCAGACTTTGGTTTACATACAGGAGAAACTTTCCAGCTATTGGGGG
AACTGGCCCTACTTCAGACACAGGCTGGGGTTGCATGCTTCGGTGTGGACAGATGATCTTTGCC
CAGGCCCTGGTATGCCGGCACTTAGGTCGAGATTGGAGGTGGACTCAGCGGAAGAGGCAGCCTG
ACAGCTACTTTAATGTCCTCAATGCTTTCCTCGACAGGAAGGACAGCTACTATTCCATCCATCA
GATAGCGCAAATGGGAGTTGGCGAAGGCAAGTCTATAGGCCAGTGGTACGGGCCGAACACTGTT
GCCCAGGTCCTCAAGTACGTAATGAGCCCAGCCCTTCTGCTTCTTGGGGTCAGCATGAGTTCTC
CTTGGCATTTACCCTCCTTGAGTACTTATTGGCACAGGAACTAAGGAAACTTGCTGTATTCGAC
ACATGGAGTTCCTTGGCTGTTCACATAGCAATGGACAACACTGTGGTGATGGAGGAAATCAGAA
GGTTATGCAGGGCCAACCTTCCCTGTGTTGGGGCGGCTGCACTTCCTACTGATTCAGAGAGGCA
CTGTAATGGGTTCCCTGCTGGAGCTGAAGTCACCAACAGGCCATCGGCTTGGAGACCACTAGTG
CTTCTCATCCCTCTCCGCCTGGGACTGACAGACATCAATGAGGCCTATGTGGAGACGCTGAAGC
ACTGTTTCATGATGCCCCAGTCCCTGGGTGTTATTGGAGGGAAGCCCAACAGTGCCCACTACTT
TATTGGCTATGTTGGGGAGGAGCTCATCTATCTGGACCCCCACACTACACAGCCTGCAGTGGAG
CTGACTGACAGCTGCTTCATCCCCGACGAGAGCTTCCACTGCCAGCACCCTCCCTCTAGGATGG
GCATTGGAGAGCTTGACCCGTCCATTGCTGTGGGGTTTTTCTGTAAGACGGAGGAAGACTTTAA
CGACTGGTGTCAGCAAGTCAAAAAGCTATCCCAGCTTGGAGGTGCCCTGCCCATGTTTGAGCTG
GTGGAACAGCAGCCTTCCCATCTGGCCTGCCAGGATGTCCTGAACCTGTCCCTAGACTCTTCTG
ATGTAGAGAGACTGGAGAGGTTTTTTGACTCTGAGGATGAAGACTTTGAAATCTTATCCCTCTG
AAAATCCTGGGGTTGGGGGATGGCCTCCATGGCCCTCATTGGGGTGCTTTGAGAACCCAGACCT
GCCTTGGGCACTCAGTGTCACCGCATTCCATCCACCCAGCCCATCCCTGCCAAGTGCTGTTCAC
CTGTGCCACCTCTGTCCCGAGGGCCTGCTCTGCTCATGGACCAAGGACTATGGTGCCTGGAGGC
CTTAATGCTTGGAGTCAGACTGCCTAAACCCCAACACAAAGGGCCTGTCCACATGAAGTCGCTC
ATCAGAAGGCCTAGTCAGGAAGAGCAGTGGGTCAGGAGCTTCCAGAATTCTCCACTGGATTCTG
ACACTGCCAGCCCTGGTCAGCACATCAGCTTTGGTTCTGCTTTCTCCTGGGCACCTGGGTCTGT
GGTTTATTTGGAATTAAAGCCCTGTTTGAAGTTGTTTAACAAAGACATGAATTTCTGGGGCACT
TCCCAGGTCAGTCTTAGACGATCTGCAGGTTATGTACAGAGTGACAGCCACATCATGGCCTCAT
ACTGCTGGGCGGGGTGAGCTTTGGGCTGTCTCCTCTGCCCAGTGTGATTTATCAAGGGCTACCT
CAGTGGGAAAGCATATGGAGAGAATCCCAAGGCTGCTACTTGCTTTGGAGAGAAAGTATTCTTG
TGGGGCATTTGGAAAATCCAAAGATATCAGTGTGCATGGGCACAGGATGGACCCCTGAACCCTG
GAGCAACTGACAAGCTCCTAGGGCTTCTGGAGTTGTGGTCCTGGGATTCCCCATTAGGACCTCG
CTAGGGAAGAGAGAGGTTTCCTCTGTGGGGTTGATGCGTTTCATGACACACCGCCTGCTGCTTT
TAGCGTGCCACCCAGCTTCCCTCTGGGAGGAAAGGGAAGGGAGCAGAGCTGCTCTATGCTTGAG
ACACCGTGCCCACTGGTGGTAGGGTACACACTGCTACTTGAGCCTTCCTCCATGTTCTTTCTCT
TCTCAGAAACCCATCTGGGTCACAGGAAATTGTAGATGGTTTGGGGCCAAAAAGGTAAAAGTAC
TACAGCTTTTTGGTGCACAATAGACATTTAGACAGCAGGTAGCTCCAGGCACTCACAAGTGAAG
AGTTCAGACCTCCTTGGCACTCATTTCCATACCTGCCACCTAACCCTGGCTTTCTGGGCCTTCA
AGCTTTTGATGCTCTAGGTCTGCTGTCTTAGAAAAACACCTTTCCTCCCCCTAGATATGAGCAG
AGTATGGCAGTGTGGGGAGGACCGTTCAAGAGCCTTTGCTAAAAGCCCTTCCCAAGAACTCGCA
GATGGGTGAGGCCAGAGCTACTCCAGATGCAGCAGCTCTAAGTAGCCCACAAGGTAGCAAGAGA
TCCCTGCCTATCAAGTGTTGAAGACATATTTATTTCATCTTACTCTTTCTCTCCCATATCTTGT
CCCTTGACTTCAGATGGGGTGGGACGGGGGGGGGGGAAAGGCCAGGACAGTTTCCATTCCCCCG
GAGCTTGTTTCCTGAGGCCAGGAGCTATTGTGCTGCTGTCGCCCAGGGTCTCGCTGTAACTCCT
GTTGTTGGTAGTAAGGGGTGGACATATGGAACACTACAACCTGAGGGAACTCTCAGGGCTTGAG
AAAGGCTTCCTGAGGTTGTTCATTCTTAGTGTAGTTTGCAATTCTTAATGATAAATAAGTTTCA
GTAGAAAACAAA

hide sequence

RefSeq Acc Id:

XM_036152889 ⟹ XP_036008782

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	1	93,682,871 - 93,717,156 (+)	NCBI

Sequence:

show sequence

CCCCGCAGCGCTCAGTACCGGGTTCGCGGGGCCACTCGTCAGCGCCTCGGCCTCCGGCGCTCGG
CCGCGGCCCTCGGGGAGCGTCCCAGCCTGTGGGCTCGCGGCTGCGGGCGTGAGGGCAGGGAGTC
TGAGGGACGCATCAGGACGCGGGCACCCTGGTGCCCGGAGAGGACCGGTGCGCCGCGAGGGTGG
GCCTTGCGGTGTCCATTGAAGAGCCGACCTCTTTAACTTCTGTCAAGTTGTTGGCCGCTGGTCC
AGCTACCACAACATGCACATCTTTTGTCTTTGAAGTTCAATAACCTGTGTAGCCACTTTGACAT
ATGATACTCTCCGGTTTGCTGAATTTGAAGATTTCCCTGAGACCTCAGAGCCTGTTTGGATTCT
GGGCAGAAAATACAGCATTTTCACAGAGAAGGACGAAATCTTGTCTGATGTTGCATCCAGACTT
TGGTTTACATACAGGAGAAACTTTCCAGCTATTGGGGGAACTGGCCCTACTTCAGACACAGGCT
GGGGTTGCATGCTTCGGTGTGGACAGATGATCTTTGCCCAGGCCCTGGTATGCCGGCACTTAGG
TCGAGATTGGAGGTGGACTCAGCGGAAGAGGCAGCCTGACAGCTACTTTAATGTCCTCAATGCT
TTCCTCGACAGGAAGGACAGCTACTATTCCATCCATCAGATAGCGCAAATGGGAGTTGGCGAAG
GCAAGTCTATAGGCCAGTGGTACGGGCCGAACACTGTTGCCCAGGTCCTCAAGTACGTAATGAG
CCCAGCCCTTCTGCTTCTTGGGGTCAGCATGAGTTCTCCTTGGCATTTACCCTCCTTGAGTACT
TATTGGCACAGGAACTAAGGAAACTTGCTGTATTCGACACATGGAGTTCCTTGGCTGTTCACAT
AGCAATGGACAACACTGTGGTGATGGAGGAAATCAGAAGGTTATGCAGGGCCAACCTTCCCTGT
GTTGGGGCGGCTGCACTTCCTACTGATTCAGAGAGGCACTGTAATGGGTTCCCTGCTGGAGCTG
AAGTCACCAACAGGCCATCGGCTTGGAGACCACTAGTGCTTCTCATCCCTCTCCGCCTGGGACT
GACAGACATCAATGAGGCCTATGTGGAGACGCTGAAGCACTGTTTCATGATGCCCCAGTCCCTG
GGTGTTATTGGAGGGAAGCCCAACAGTGCCCACTACTTTATTGGCTATGTTGGGGAGGAGCTCA
TCTATCTGGACCCCCACACTACACAGCCTGCAGTGGAGCTGACTGACAGCTGCTTCATCCCCGA
CGAGAGCTTCCACTGCCAGCACCCTCCCTCTAGGATGGGCATTGGAGAGCTTGACCCGTCCATT
GCTGTGGGGTTTTTCTGTAAGACGGAGGAAGACTTTAACGACTGGTGTCAGCAAGTCAAAAAGC
TATCCCAGCTTGGAGGTGCCCTGCCCATGTTTGAGCTGGTGGAACAGCAGCCTTCCCATCTGGC
CTGCCAGGATGTCCTGAACCTGTCCCTAGACTCTTCTGATGTAGAGAGACTGGAGAGGTTTTTT
GACTCTGAGGATGAAGACTTTGAAATCTTATCCCTCTGAAAATCCTGGGGTTGGGGGATGGCCT
CCATGGCCCTCATTGGGGTGCTTTGAGAACCCAGACCTGCCTTGGGCACTCAGTGTCACCGCAT
TCCATCCACCCAGCCCATCCCTGCCAAGTGCTGTTCACCTGTGCCACCTCTGTCCCGAGGGCCT
GCTCTGCTCATGGACCAAGGACTATGGTGCCTGGAGGCCTTAATGCTTGGAGTCAGACTGCCTA
AACCCCAACACAAAGGGCCTGTCCACATGAAGTCGCTCATCAGAAGGCCTAGTCAGGAAGAGCA
GTGGGTCAGGAGCTTCCAGAATTCTCCACTGGATTCTGACACTGCCAGCCCTGGTCAGCACATC
AGCTTTGGTTCTGCTTTCTCCTGGGCACCTGGGTCTGTGGTTTATTTGGAATTAAAGCCCTGTT
TGAAGTTGTTTAACAAAGACATGAATTTCTGGGGCACTTCCCAGGTCAGTCTTAGACGATCTGC
AGGTTATGTACAGAGTGACAGCCACATCATGGCCTCATACTGCTGGGCGGGGTGAGCTTTGGGC
TGTCTCCTCTGCCCAGTGTGATTTATCAAGGGCTACCTCAGTGGGAAAGCATATGGAGAGAATC
CCAAGGCTGCTACTTGCTTTGGAGAGAAAGTATTCTTGTGGGGCATTTGGAAAATCCAAAGATA
TCAGTGTGCATGGGCACAGGATGGACCCCTGAACCCTGGAGCAACTGACAAGCTCCTAGGGCTT
CTGGAGTTGTGGTCCTGGGATTCCCCATTAGGACCTCGCTAGGGAAGAGAGAGGTTTCCTCTGT
GGGGTTGATGCGTTTCATGACACACCGCCTGCTGCTTTTAGCGTGCCACCCAGCTTCCCTCTGG
GAGGAAAGGGAAGGGAGCAGAGCTGCTCTATGCTTGAGACACCGTGCCCACTGGTGGTAGGGTA
CACACTGCTACTTGAGCCTTCCTCCATGTTCTTTCTCTTCTCAGAAACCCATCTGGGTCACAGG
AAATTGTAGATGGTTTGGGGCCAAAAAGGTAAAAGTACTACAGCTTTTTGGTGCACAATAGACA
TTTAGACAGCAGGTAGCTCCAGGCACTCACAAGTGAAGAGTTCAGACCTCCTTGGCACTCATTT
CCATACCTGCCACCTAACCCTGGCTTTCTGGGCCTTCAAGCTTTTGATGCTCTAGGTCTGCTGT
CTTAGAAAAACACCTTTCCTCCCCCTAGATATGAGCAGAGTATGGCAGTGTGGGGAGGACCGTT
CAAGAGCCTTTGCTAAAAGCCCTTCCCAAGAACTCGCAGATGGGTGAGGCCAGAGCTACTCCAG
ATGCAGCAGCTCTAAGTAGCCCACAAGGTAGCAAGAGATCCCTGCCTATCAAGTGTTGAAGACA
TATTTATTTCATCTTACTCTTTCTCTCCCATATCTTGTCCCTTGACTTCAGATGGGGTGGGACG
GGGGGGGGGGAAAGGCCAGGACAGTTTCCATTCCCCCGGAGCTTGTTTCCTGAGGCCAGGAGCT
ATTGTGCTGCTGTCGCCCAGGGTCTCGCTGTAACTCCTGTTGTTGGTAGTAAGGGGTGGACATA
TGGAACACTACAACCTGAGGGAACTCTCAGGGCTTGAGAAAGGCTTCCTGAGGTTGTTCATTCT
TAGTGTAGTTTGCAATTCTTAATGATAAATAAGTTTCAGTAGAAAACAAA

hide sequence

RefSeq Acc Id:

XR_004934055

RefSeq Status:

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	1	93,682,631 - 93,717,156 (+)	NCBI

Sequence:

show sequence

GCCCACCGCCGTACGGCGAGATGGCGACGCCCGCGCTTCCGCTGCGCCGCGCTTGGCTGCCGCG
GCTTCCCGTCGCCGTGTCGCGCAGTAGTCCGTCGGAGCGACGGCACGGTCAGTCGGCAGCCGGA
CAGGGAAGATGGACGCAGCCACTTTGACATATGATACTCTCCGGTTTGCTGAATTTGAAGATTT
CCCTGAGACCTCAGAGCCTGTTTGGATTCTGGGCAGAAAATACAGCATTTTCACAGAGAAGGAC
GAAATCTTGTCTGATGTTGCATCCAGACTTTGGTTTACATACAGGAGAAACTTTCCAGCTATTG
GGGGAACTGGCCCTACTTCAGACACAGGCTGGGGTTGCATGCTTCGGTGTGGACAGATGATCTT
TGCCCAGGCCCTGGTATGCCGGCACTTAGGTCGAGATTGGAGGTGGACTCAGCGGAAGAGGCAG
CCTGACAGCTACTTTAATGTCCTCAATGCTTTCCTCGACAGGAAGGACAGCTACTATTCCATCC
ATCAGATAGCGCAAATGGGAGTTGGCGAAGGCAAGTCTATAGGCCAGTGGTACGGGCCGAACAC
TGTTGCCCAGGTCCTCAAGAAACTTGCTGTATTCGACACATGGAGTTCCTTGGCTGTTCACATA
GCAATGGACAACACTGTGGTGATGGAGGAAATCAGAAGGTTATGCAGGGCCAACCTTCCCTGTG
TTGGGGCGGCTGCACTTCCTACTGATTCAGAGAGGCACTGTAATGGGTTCCCTGCTGGAGCTGA
AGTCACCAACAGGCCATCGGCTTGGAGACCACTAGTGCTTCTCATCCCTCTCCGCCTGGGACTG
ACAGACATCAATGAGGCCTATGTGGAGACGCTGAAGCACTGTTTCATGATGCCCCAGTCCCTGG
GTGTTATTGGAGGGAAGCCCAACAGTGCCCACTACTTTATTGGCTATGTTGGGGAGGAGCTCAT
CTATCTGGACCCCCACACTACACAGCCTGCAGTGGAGCTGACTGACAGCTGCTTCATCCCCGAC
GAGAGCTTCCACTGCCAGCACCCTCCCTCTAGGATGGGCATTGGAGAGCTTGACCCGTCCATTG
CTGTGGGGTTTTTCTGTAAGACGGAGGAAGACTTTAACGACTGGTGTCAGCAAGTCAAAAAGGT
CTGTAGCTGCCCCTGTCCAGAGCCAAGATGAAACTTCTGGGGACCCAGGCAATGAGCTATCCCA
GCTTGGAGGTGCCCTGCCCATGTTTGAGCTGGTGGAACAGCAGCCTTCCCATCTGGCCTGCCAG
GATGTCCTGAACCTGTCCCTAGACTCTTCTGATGTAGAGAGACTGGAGAGGTTTTTTGACTCTG
AGGATGAAGACTTTGAAATCTTATCCCTCTGAAAATCCTGGGGTTGGGGGATGGCCTCCATGGC
CCTCATTGGGGTGCTTTGAGAACCCAGACCTGCCTTGGGCACTCAGTGTCACCGCATTCCATCC
ACCCAGCCCATCCCTGCCAAGTGCTGTTCACCTGTGCCACCTCTGTCCCGAGGGCCTGCTCTGC
TCATGGACCAAGGACTATGGTGCCTGGAGGCCTTAATGCTTGGAGTCAGACTGCCTAAACCCCA
ACACAAAGGGCCTGTCCACATGAAGTCGCTCATCAGAAGGCCTAGTCAGGAAGAGCAGTGGGTC
AGGAGCTTCCAGAATTCTCCACTGGATTCTGACACTGCCAGCCCTGGTCAGCACATCAGCTTTG
GTTCTGCTTTCTCCTGGGCACCTGGGTCTGTGGTTTATTTGGAATTAAAGCCCTGTTTGAAGTT
GTTTAACAAAGACATGAATTTCTGGGGCACTTCCCAGGTCAGTCTTAGACGATCTGCAGGTTAT
GTACAGAGTGACAGCCACATCATGGCCTCATACTGCTGGGCGGGGTGAGCTTTGGGCTGTCTCC
TCTGCCCAGTGTGATTTATCAAGGGCTACCTCAGTGGGAAAGCATATGGAGAGAATCCCAAGGC
TGCTACTTGCTTTGGAGAGAAAGTATTCTTGTGGGGCATTTGGAAAATCCAAAGATATCAGTGT
GCATGGGCACAGGATGGACCCCTGAACCCTGGAGCAACTGACAAGCTCCTAGGGCTTCTGGAGT
TGTGGTCCTGGGATTCCCCATTAGGACCTCGCTAGGGAAGAGAGAGGTTTCCTCTGTGGGGTTG
ATGCGTTTCATGACACACCGCCTGCTGCTTTTAGCGTGCCACCCAGCTTCCCTCTGGGAGGAAA
GGGAAGGGAGCAGAGCTGCTCTATGCTTGAGACACCGTGCCCACTGGTGGTAGGGTACACACTG
CTACTTGAGCCTTCCTCCATGTTCTTTCTCTTCTCAGAAACCCATCTGGGTCACAGGAAATTGT
AGATGGTTTGGGGCCAAAAAGGTAAAAGTACTACAGCTTTTTGGTGCACAATAGACATTTAGAC
AGCAGGTAGCTCCAGGCACTCACAAGTGAAGAGTTCAGACCTCCTTGGCACTCATTTCCATACC
TGCCACCTAACCCTGGCTTTCTGGGCCTTCAAGCTTTTGATGCTCTAGGTCTGCTGTCTTAGAA
AAACACCTTTCCTCCCCCTAGATATGAGCAGAGTATGGCAGTGTGGGGAGGACCGTTCAAGAGC
CTTTGCTAAAAGCCCTTCCCAAGAACTCGCAGATGGGTGAGGCCAGAGCTACTCCAGATGCAGC
AGCTCTAAGTAGCCCACAAGGTAGCAAGAGATCCCTGCCTATCAAGTGTTGAAGACATATTTAT
TTCATCTTACTCTTTCTCTCCCATATCTTGTCCCTTGACTTCAGATGGGGTGGGACGGGGGGGG
GGGAAAGGCCAGGACAGTTTCCATTCCCCCGGAGCTTGTTTCCTGAGGCCAGGAGCTATTGTGC
TGCTGTCGCCCAGGGTCTCGCTGTAACTCCTGTTGTTGGTAGTAAGGGGTGGACATATGGAACA
CTACAACCTGAGGGAACTCTCAGGGCTTGAGAAAGGCTTCCTGAGGTTGTTCATTCTTAGTGTA
GTTTGCAATTCTTAATGATAAATAAGTTTCAGTAGAAAACAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001355195	(Get FASTA)	NCBI Sequence Viewer
	NP_777363	(Get FASTA)	NCBI Sequence Viewer
	XP_006529856	(Get FASTA)	NCBI Sequence Viewer
	XP_036008779	(Get FASTA)	NCBI Sequence Viewer
	XP_036008782	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH27184	(Get FASTA)	NCBI Sequence Viewer
	BAC26079	(Get FASTA)	NCBI Sequence Viewer
	BAC27455	(Get FASTA)	NCBI Sequence Viewer
	BAC35965	(Get FASTA)	NCBI Sequence Viewer
	BAC40587	(Get FASTA)	NCBI Sequence Viewer
	BAC98052	(Get FASTA)	NCBI Sequence Viewer
	BAE25791	(Get FASTA)	NCBI Sequence Viewer
	CAD43220	(Get FASTA)	NCBI Sequence Viewer
	EDL39932	(Get FASTA)	NCBI Sequence Viewer
	EDL39933	(Get FASTA)	NCBI Sequence Viewer
	EDL39934	(Get FASTA)	NCBI Sequence Viewer
	EDL39935	(Get FASTA)	NCBI Sequence Viewer
	EDL39936	(Get FASTA)	NCBI Sequence Viewer
	Q8BGE6	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_777363 ⟸ NM_174874
- Peptide Label:	isoform 1
- UniProtKB:	Q8BGE6 (UniProtKB/Swiss-Prot), A0A0R4J065 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDAATLTYDTLRFAEFEDFPETSEPVWILGRKYSIFTEKDEILSDVASRLWFTYRRNFPAIGGT GPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYFNVLNAFLDRKDSYYSIHQI AQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVMEEIRRLCRANLPCVGA AALPTDSERHCNGFPAGAEVTNRPSAWRPLVLLIPLRLGLTDINEAYVETLKHCFMMPQSLGVI GGKPNSAHYFIGYVGEELIYLDPHTTQPAVELTDSCFIPDESFHCQHPPSRMGIGELDPSIAVG FFCKTEEDFNDWCQQVKKLSQLGGALPMFELVEQQPSHLACQDVLNLSLDSSDVERLERFFDSE DEDFEILSL hide sequence

RefSeq Acc Id:

XP_006529856 ⟸ XM_006529793

- Peptide Label:

isoform X1

- Sequence:

show sequence

MLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYFNVLNAFLDRKDSYYSIHQIAQMGVGEGKS
IGQWYGPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVMEEIRRLCRANLPCVGAAALPTDSERH
CNGFPAGAEVTNRPSAWRPLVLLIPLRLGLTDINEAYVETLKHCFMMPQSLGVIGGKPNSAHYF
IGYVGEELIYLDPHTTQPAVELTDSCFIPDESFHCQHPPSRMGIGELDPSIAVGFFCKTEEDFN
DWCQQVKKLSQLGGALPMFELVEQQPSHLACQDVLNLSLDSSDVERLERFFDSEDEDFEILSL

hide sequence

RefSeq Acc Id:	NP_001355195 ⟸ NM_001368266
- Peptide Label:	isoform 2

RefSeq Acc Id:

ENSMUSP00000027502 ⟸ ENSMUST00000027502

RefSeq Acc Id:

ENSMUSP00000139463 ⟸ ENSMUST00000186811

RefSeq Acc Id:

ENSMUSP00000140758 ⟸ ENSMUST00000185482

RefSeq Acc Id:

ENSMUSP00000123383 ⟸ ENSMUST00000149436

RefSeq Acc Id:

ENSMUSP00000139541 ⟸ ENSMUST00000187824

RefSeq Acc Id:	XP_036008779 ⟸ XM_036152886
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_036008782 ⟸ XM_036152889
- Peptide Label:	isoform X2

Protein Domains

Peptidase C54 catalytic

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q8BGE6-F1-model_v2	AlphaFold	Q8BGE6	1-393	view protein structure

Promoters

RGD ID:

6874570

Promoter ID:

EPDNEW_M736

Type:

initiation region

Name:

Atg4b_1

Description:

Mus musculus autophagy related 4B, cysteine peptidase , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	1	93,755,023 - 93,755,083	EPDNEW

RGD ID:

6818582

Promoter ID:

MM_KWN:1705

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day4, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, Spleen

Transcripts:

ENSMUST00000027500, ENSMUST00000112905, OTTMUST00000081166, OTTMUST00000081167, UC007CEG.1, UC007CEH.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	1	95,651,259 - 95,651,759 (-)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1913865	AgrOrtholog
Ensembl Genes	ENSMUSG00000026280	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSMUSP00000027502	ENTREZGENE
	ENSMUSP00000027502.9	UniProtKB/TrEMBL
	ENSMUSP00000123383.2	UniProtKB/TrEMBL
	ENSMUSP00000139463.2	UniProtKB/TrEMBL
	ENSMUSP00000139541.2	UniProtKB/TrEMBL
	ENSMUSP00000140758.2	UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000027502	ENTREZGENE
	ENSMUST00000027502.16	UniProtKB/TrEMBL
	ENSMUST00000149436.8	UniProtKB/TrEMBL
	ENSMUST00000185482.7	UniProtKB/TrEMBL
	ENSMUST00000186811.2	UniProtKB/TrEMBL
	ENSMUST00000187824.7	UniProtKB/TrEMBL
InterPro	ATG4_LIR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Papain-like_cys_pep_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Peptidase_C54	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Peptidase_C54_cat	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:66615	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD	MGI:1913865	ENTREZGENE
NCBI Gene	66615	ENTREZGENE
PANTHER	PTHR22624	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR22624:SF39	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	ATG4_LIR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Peptidase_C54	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Atg4b	PhenoGen
Superfamily-SCOP	SSF54001	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A087WNR6_MOUSE	UniProtKB/TrEMBL
	A0A087WNY2_MOUSE	UniProtKB/TrEMBL
	A0A087WRT0_MOUSE	UniProtKB/TrEMBL
	A0A0R4J065	ENTREZGENE, UniProtKB/TrEMBL
	ATG4B_MOUSE	UniProtKB/Swiss-Prot
	D3YZP6_MOUSE	UniProtKB/TrEMBL
	Q3UNF6_MOUSE	UniProtKB/TrEMBL
	Q8BGE6	ENTREZGENE
UniProt Secondary	Q6ZQ22	UniProtKB/Swiss-Prot
	Q8R098	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-04-07	Atg4b	autophagy related 4B, cysteine peptidase	AW048066	expressed sequence AW048066	Data Merged	737654	PROVISIONAL
2012-06-19	Atg4b	autophagy related 4B, cysteine peptidase	Atg4b	autophagy-related 4B (yeast)	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

RGD Manual Annotations

Imported Annotations - KEGG (archival)

Mammalian Phenotype

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Imported Disease Annotations - ClinVar

RGD Manual Annotations

Imported Annotations - KEGG (archival)

Mammalian Phenotype