H2-Ab1 (histocompatibility 2, class II antigen A, beta 1) - Rat Genome Database

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Gene: H2-Ab1 (histocompatibility 2, class II antigen A, beta 1) Mus musculus
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Symbol: H2-Ab1
Name: histocompatibility 2, class II antigen A, beta 1
RGD ID: 1557975
MGI Page MGI
Description: Enables peptide antigen binding activity. Acts upstream of or within antigen processing and presentation of exogenous peptide antigen via MHC class II and immune response. Located in Golgi apparatus; endosome; and external side of plasma membrane. Part of MHC class II protein complex. Is expressed in several structures, including adipose tissue; bone; hemolymphoid system; liver; and lung. Used to study dilated cardiomyopathy and myocarditis. Human ortholog(s) of this gene implicated in several diseases, including allergic disease (multiple); autoimmune disease (multiple); bacterial infectious disease (multiple); hematologic cancer (multiple); and liver disease (multiple). Orthologous to several human genes including HLA-DQB1 (major histocompatibility complex, class II, DQ beta 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Abe; Abeta; AI845868; H-2 class II histocompatibility antigen, A beta chain; H-2A; H-2Ab; H2-A; H2-Ab; H2-Ab_; histocompatibility 2, class II antigen A, beta, promoter 1; I; I-A<; I-A; I-Ab; I-Abeta; Ia; Ia-2; Ia2; IAb; major histocompatibility complex class II beta chain; MHC class II antigen A beta; MHC class II H2-IA-beta-psi; response to metastatic cancers 1; Rmc; Rmcs1
RGD Orthologs
Human
Rat
Bonobo
Dog
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391734,482,201 - 34,488,392 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1734,476,663 - 34,488,393 (+)EnsemblGRCm39 Ensembl
GRCm381734,263,227 - 34,269,418 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1734,257,689 - 34,269,419 (+)EnsemblGRCm38mm10GRCm38
MGSCv371734,400,172 - 34,406,363 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361733,871,432 - 33,877,605 (+)NCBIMGSCv36mm8
Celera1737,017,337 - 37,030,239 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1717.98NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
achalasia  (ISO)
acute disseminated encephalomyelitis  (ISO)
acute lymphoblastic leukemia  (ISO)
acute myeloid leukemia  (ISO)
Addison's disease  (ISO)
agranulocytosis  (ISO)
allergic bronchopulmonary aspergillosis  (ISO)
allergic disease  (ISO)
alopecia areata  (ISO)
alveolar echinococcosis  (ISO)
Amebic Liver Abscess  (ISO)
angioedema  (ISO)
ankylosing spondylitis  (ISO)
antiphospholipid syndrome  (ISO)
aplastic anemia  (ISO)
arthritis  (ISO)
aspirin-induced respiratory disease  (ISO)
asthma  (ISO)
atrophic gastritis  (ISO)
autoimmune disease  (ISO)
autoimmune hepatitis  (ISO)
autoimmune pancreatitis  (ISO)
autoimmune polyendocrine syndrome  (ISO)
autoimmune polyendocrine syndrome type 2  (ISO)
autoimmune thrombocytopenic purpura  (ISO)
autoimmune thyroiditis  (ISO)
bacterial infectious disease  (ISO)
Behcet's disease  (ISO)
beta thalassemia  (ISO)
Cataplexy  (ISO)
celiac disease  (ISO)
cervical cancer  (ISO)
cervical dystonia  (ISO)
Chemical and Drug Induced Liver Injury  (ISO)
chikungunya  (ISO)
choreatic disease  (ISO)
Chronic Hepatitis B  (ISO)
Chronic Hepatitis C  (ISO)
chronic myeloid leukemia  (ISO)
cicatricial pemphigoid  (ISO)
colorectal cancer  (ISO)
common variable immunodeficiency  (ISO)
common wart  (ISO)
COVID-19  (ISO)
Creutzfeldt-Jakob disease  (ISO)
Crohn's disease  (ISO)
cystic echinococcosis  (ISO)
degenerative myopia  (ISO)
Delayed Hypersensitivity  (ISO)
dental caries  (ISO)
diabetic retinopathy  (ISO)
dilated cardiomyopathy  (ISO)
dilated cardiomyopathy 1H  (ISO)
Drug Eruptions  (ISO)
Drug-induced Neutropenia  (ISO)
End Stage Liver Disease  (ISO)
erythema multiforme  (ISO)
Experimental Autoimmune Encephalomyelitis  (ISO)
glaucoma  (ISO)
Graves' disease  (ISO)
Hashimoto Disease  (ISO)
Helicobacter Infections  (ISO)
hepatitis B  (ISO)
hepatitis C  (ISO)
hepatocellular carcinoma  (ISO)
human immunodeficiency virus infectious disease  (ISO)
hyperthyroidism  (ISO)
hypothyroidism  (ISO)
Idiopathic Hypersomnolence  (ISO)
IgA glomerulonephritis  (ISO)
immunoglobulin alpha deficiency  (ISO)
iridocyclitis  (ISO)
juvenile rheumatoid arthritis  (ISO)
latex allergy  (ISO)
liver cirrhosis  (ISO)
marginal zone lymphoma  (ISO)
multidrug-resistant tuberculosis  (ISO)
multiple sclerosis  (ISO)
myasthenia gravis  (ISO)
mycosis fungoides  (ISO)
myocarditis  (ISO)
myositis  (ISO)
narcolepsy  (ISO)
Nasal Polyps  (ISO)
neuromyelitis optica  (ISO)
optic neuritis  (ISO)
Oropharyngeal Neoplasms  (ISO)
osteomyelitis  (ISO)
paroxysmal nocturnal hemoglobinuria  (ISO)
pemphigus  (ISO)
pemphigus vulgaris  (ISO)
Plasmodium falciparum malaria  (ISO)
pneumoconiosis  (ISO)
pneumocystosis  (ISO)
pre-eclampsia  (ISO)
primary progressive multiple sclerosis  (ISO)
primary sclerosing cholangitis  (ISO)
proteasome-associated autoinflammatory syndrome 1  (ISO)
psoriasis  (ISO)
pulmonary tuberculosis  (ISO)
pure red-cell aplasia  (ISO)
Recurrent Respiratory Papillomatosis  (ISO)
rheumatic fever  (ISO)
rheumatic heart disease  (ISO)
rheumatoid arthritis  (ISO)
rhinitis  (ISO)
rhinoscleroma  (ISO)
Rhinosinusitis, Allergic Fungal  (ISO)
sarcoidosis  (ISO)
Seasonal Allergic Rhinitis  (ISO)
sickle cell anemia  (ISO)
silicosis  (ISO)
Sjogren's syndrome  (ISO)
Sleep Initiation and Maintenance Disorders  (ISO)
Small Fiber Neuropathy  (ISO)
Stevens-Johnson syndrome  (ISO)
stomach disease  (ISO)
Stroke  (ISO)
systemic lupus erythematosus  (ISO)
systemic scleroderma  (ISO)
thrombotic thrombocytopenic purpura  (ISO)
Transplant Rejection  (ISO)
tropical spastic paraparesis  (ISO)
tuberculosis  (ISO)
Tubulointerstitial Nephritis and Uveitis  (ISO)
type 1 diabetes mellitus  (ISO)
typhoid fever  (ISO)
ulcerative colitis  (ISO)
urticaria  (ISO)
Uterine Cervical Dysplasia  (ISO)
uveitis  (ISO)
Veno-Occlusive Disease  (ISO)
vitiligo  (ISO)
Vogt-Koyanagi-Harada disease  (ISO)
vulva cancer  (ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
(S)-nicotine  (ISO)
1,2-dimethylhydrazine  (EXP)
1,4-dioxane  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
17beta-estradiol 3-benzoate  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4,6-trinitrotoluene  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP)
2-butoxyethanol  (EXP)
2-nitrofluorene  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (ISO)
4-hydroxyphenyl retinamide  (EXP)
6-propyl-2-thiouracil  (ISO)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (EXP)
all-trans-retinoic acid  (EXP,ISO)
amoxicillin  (ISO)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
Benzo[ghi]perylene  (EXP)
Benzo[k]fluoranthene  (EXP)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
buta-1,3-diene  (EXP)
C60 fullerene  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
capsaicin  (EXP)
carbamazepine  (ISO)
carbon nanotube  (EXP)
cefuroxime  (ISO)
chlorohydrocarbon  (ISO)
chloroprene  (EXP)
chlorpyrifos  (EXP)
choline  (EXP)
clothianidin  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
corn oil  (ISO)
Cuprizon  (ISO)
cyclosporin A  (EXP)
D-glucose  (EXP)
daidzein  (EXP)
DDT  (ISO)
decabromodiphenyl ether  (ISO)
dexamethasone  (EXP,ISO)
dextran sulfate  (EXP)
Dibutyl phosphate  (ISO)
diclofenac  (ISO)
diethylstilbestrol  (EXP,ISO)
dioxygen  (EXP)
diquat  (EXP)
doramapimod  (EXP)
dorsomorphin  (ISO)
doxorubicin  (EXP,ISO)
elemental selenium  (ISO)
endosulfan  (ISO)
entinostat  (ISO)
fenoprofen  (ISO)
fenthion  (EXP)
ferroheme b  (EXP)
folic acid  (EXP)
fructose  (EXP)
fulvestrant  (ISO)
furan  (ISO)
genistein  (EXP)
gentamycin  (ISO)
glucose  (EXP)
glycidol  (ISO)
glyphosate  (EXP)
heme b  (EXP)
hexachlorobenzene  (ISO)
iron atom  (ISO)
iron(0)  (ISO)
isoprenaline  (EXP)
isotretinoin  (ISO)
ketoconazole  (ISO)
ketoprofen  (ISO)
L-methionine  (EXP)
lead diacetate  (EXP)
levonorgestrel  (ISO)
lipopolysaccharide  (EXP)
lumiracoxib  (ISO)
menadione  (EXP)
mercury atom  (ISO)
mercury(0)  (ISO)
methyl methanesulfonate  (ISO)
methylisothiazolinone  (ISO)
methylmercury chloride  (ISO)
metronidazole  (ISO)
mono(2-ethylhexyl) phthalate  (EXP)
N-(6-acetamidohexyl)acetamide  (EXP)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (EXP)
N-nitrosodiethylamine  (ISO)
N-nitrosodimethylamine  (ISO)
nickel atom  (ISO)
nickel dichloride  (ISO)
nicotine  (ISO)
nifedipine  (ISO)
oxaprozin  (ISO)
ozone  (EXP)
palladium  (ISO)
panobinostat  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
pentamidine  (ISO)
perfluorohexanesulfonic acid  (EXP)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
phenacetin  (ISO)
phenobarbital  (ISO)
phenylhydrazine  (ISO)
pirinixic acid  (EXP,ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
propiconazole  (EXP)
quercetin  (EXP)
raloxifene  (ISO)
rifampicin  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
simvastatin  (ISO)
sodium arsenite  (EXP)
sodium dichromate  (EXP)
sulfasalazine  (ISO)
tamibarotene  (ISO)
tamoxifen  (EXP)
testosterone  (ISO)
testosterone enanthate  (ISO)
testosterone undecanoate  (ISO)
tetrachloromethane  (EXP)
titanium dioxide  (EXP,ISO)
tolmetin  (ISO)
toluene  (ISO)
toluene 2,4-diisocyanate  (ISO)
Tributyltin oxide  (EXP)
trichloroethene  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
triptonide  (EXP)
tungsten  (EXP)
valproic acid  (EXP,ISO)
vancomycin  (EXP)
vinclozolin  (ISO)
vitamin E  (ISO)
vorinostat  (EXP)
zebularine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal artery development  (IAGP)
abnormal atrial thrombosis  (IAGP)
abnormal B cell physiology  (IAGP)
abnormal breathing pattern  (IAGP)
abnormal CD4-positive T cell differentiation  (IAGP)
abnormal CD4-positive, alpha beta T cell morphology  (IAGP)
abnormal CD4-positive, alpha-beta T cell physiology  (IAGP)
abnormal CD4-positive, CD25-positive, alpha-beta regulatory T cell morphology  (IAGP)
abnormal CD8-positive, alpha beta T cell morphology  (IAGP)
abnormal cytokine secretion  (IAGP)
abnormal dendritic cell antigen presentation  (IAGP)
abnormal dendritic cell physiology  (IAGP)
abnormal heart electrocardiography waveform feature  (IAGP)
abnormal heart ventricle morphology  (IAGP)
abnormal humoral immune response  (IAGP)
abnormal immune system cell morphology  (IAGP)
abnormal immune system morphology  (IAGP)
abnormal immune system organ morphology  (IAGP)
abnormal immune system physiology  (IAGP)
abnormal immunoglobulin level  (IAGP)
abnormal interferon secretion  (IAGP)
abnormal level of surface class II molecules  (IAGP)
abnormal liver morphology  (IAGP)
abnormal lymph node cell ratio  (IAGP)
abnormal lymphocyte physiology  (IAGP)
abnormal macrophage antigen presentation  (IAGP)
abnormal myocardial fiber morphology  (IAGP)
abnormal negative T cell selection  (IAGP)
abnormal neuron proliferation  (IAGP)
abnormal PR interval  (IAGP)
abnormal professional antigen presenting cell physiology  (IAGP)
abnormal pulmonary vein morphology  (IAGP)
abnormal response to infection  (IAGP)
abnormal response to transplant  (IAGP)
abnormal response/metabolism to endogenous compounds  (IAGP)
abnormal spleen B cell follicle morphology  (IAGP)
abnormal spleen marginal zone morphology  (IAGP)
abnormal spleen morphology  (IAGP)
abnormal spleen periarteriolar lymphoid sheath morphology  (IAGP)
abnormal T cell activation  (IAGP)
abnormal T cell differentiation  (IAGP)
abnormal T cell physiology  (IAGP)
abnormal T cell subpopulation ratio  (IAGP)
absent CD4-positive, alpha-beta T cells  (IAGP)
absent CD8-positive, alpha-beta T cells  (IAGP)
absent spleen germinal center  (IAGP)
atrioventricular block  (IAGP)
autoimmune response  (IAGP)
cardiac fibrosis  (IAGP)
congestive heart failure  (IAGP)
cyanosis  (IAGP)
decreased alpha-beta T cell number  (IAGP)
decreased CD4-positive, alpha-beta T cell number  (IAGP)
decreased CD4-positive, CD25-positive, alpha-beta regulatory T cell number  (IAGP)
decreased CD8-positive, alpha-beta T cell number  (IAGP)
decreased heart ventricle muscle contractility  (IAGP)
decreased IgG level  (IAGP)
decreased IgG1 level  (IAGP)
decreased IgM level  (IAGP)
decreased interleukin-12 secretion  (IAGP)
decreased interleukin-6 secretion  (IAGP)
decreased level of surface class II molecules  (IAGP)
decreased regulatory T cell number  (IAGP)
decreased single-positive T cell number  (IAGP)
decreased susceptibility to autoimmune diabetes  (IAGP)
decreased susceptibility to autoimmune disorder  (IAGP)
decreased susceptibility to experimental autoimmune encephalomyelitis  (IAGP)
decreased susceptibility to experimental autoimmune myasthenia gravis  (IAGP)
decreased susceptibility to parasitic infection  (IAGP)
decreased tumor necrosis factor secretion  (IAGP)
dilated cardiomyopathy  (IAGP)
edema  (IAGP)
enlarged heart  (IAGP)
enlarged liver  (IAGP)
enlarged thyroid gland  (IEA)
heart inflammation  (IAGP)
hemolytic anemia  (IAGP)
increased anti-double stranded DNA antibody level  (IAGP)
increased anti-erythrocyte antigen antibody level  (IAGP)
increased anti-single stranded DNA antibody level  (IAGP)
increased autoantibody level  (IAGP)
increased B cell number  (IAGP)
increased CD4-positive, alpha-beta T cell number  (IAGP)
increased CD8-positive, alpha-beta T cell number  (IAGP)
increased circulating glucose level  (IAGP)
increased circulating thyroid-stimulating hormone level  (IEA)
increased double-negative T cell number  (IAGP)
increased IgM level  (IAGP)
increased interferon-gamma secretion  (IAGP)
increased susceptibility to autoimmune diabetes  (IAGP)
increased susceptibility to parasitic infection  (IAGP)
increased urine glucose level  (IAGP)
increased urine protein level  (IAGP)
insulitis  (IAGP)
lethargy  (IAGP)
liver hemorrhage  (IAGP)
lung inflammation  (IAGP)
mitral valve regurgitation  (IAGP)
myocardial fiber degeneration  (IAGP)
myocarditis  (IAGP)
myocardium necrosis  (IAGP)
myositis  (IAGP)
no abnormal phenotype detected  (IAGP)
pleural effusion  (IAGP)
postnatal growth retardation  (IAGP)
premature death  (IAGP)
preweaning lethality, incomplete penetrance  (IAGP)
prolonged PR interval  (IAGP)
reduced fertility  (IAGP)
salivary gland inflammation  (IAGP)
thyroid gland inflammation  (IEA)
References

References - curated
# Reference Title Reference Citation
1. Treatment of autoimmune anterior uveitis with recombinant TCR ligands. Adamus G, etal., Invest Ophthalmol Vis Sci. 2006 Jun;47(6):2555-61.
2. HLA-DQB1*0201/0302 is associated with severe retinopathy in patients with IDDM. Agardh D, etal., Diabetologia. 1996 Nov;39(11):1313-7.
3. Evidence for HLA class II susceptible and protective haplotypes for osteomyelitis in pediatric patients with sickle cell anemia. Al-Ola K, etal., Tissue Antigens. 2008 May;71(5):453-7. doi: 10.1111/j.1399-0039.2008.01012.x. Epub 2008 Feb 28.
4. Acute disseminated encephalomyelitis: clinical features, HLA DRB1*1501, HLA DRB1*1503, HLA DQA1*0102, HLA DQB1*0602, and HLA DPA1*0301 allelic association study. Alves-Leon SV, etal., Arq Neuropsiquiatr. 2009 Sep;67(3A):643-51.
5. [Immunogenetic aspects of the course and treatment of pulmonary tuberculosis]. Archakova LI, etal., Probl Tuberk Bolezn Legk. 2008;(12):34-7.
6. HLA, PTPN22 and PD-1 associations as markers of autoimmunity in neuromyelitis optica. Asgari N, etal., Mult Scler. 2012 Jan;18(1):23-30. doi: 10.1177/1352458511417480. Epub 2011 Sep 9.
7. Candidate gene analysis identifies a polymorphism in HLA-DQB1 associated with clozapine-induced agranulocytosis. Athanasiou MC, etal., J Clin Psychiatry. 2011 Apr;72(4):458-63. doi: 10.4088/JCP.09m05527yel. Epub 2010 Sep 21.
8. Risk of recurrence of primary sclerosing cholangitis after liver transplantation is associated with de novo inflammatory bowel disease. Bajer L, etal., World J Gastroenterol. 2018 Nov 21;24(43):4939-4949. doi: 10.3748/wjg.v24.i43.4939.
9. [Association of the relationship between HLA-DQB1 alleles and major beta-thalassemia in 42 guangdong Chinese]. Bao R, etal., Zhongguo Shi Yan Xue Ye Xue Za Zhi. 2002 Feb;10(1):87-8.
10. Opposing effects of the HLA-DRB1*0301-DQB1*0201 haplotype on the risk for multiple sclerosis in diverse Arab populations in Israel. Benedek G, etal., Genes Immun. 2010 Jul;11(5):423-31. Epub 2010 May 13.
11. HLA class II distribution in Congolese with hyperthyroidism: preliminary results. Bidingija M, etal., Ann Endocrinol (Paris). 2006 Dec;67(6):596-603.
12. Genetic basis of the latex-fruit syndrome: association with HLA class II alleles in a Spanish population. Blanco C, etal., J Allergy Clin Immunol. 2004 Nov;114(5):1070-6.
13. Identification of HLA-DR and -DQ alleles conferring susceptibility to pollen allergy and pollen associated food allergy. Boehncke WH, etal., Clin Exp Allergy. 1998 Apr;28(4):434-41.
14. HLA alleles, IFN-gamma responses to HPV-11 E6, and disease severity in patients with recurrent respiratory papillomatosis. Bonagura VR, etal., Hum Immunol. 2004 Aug;65(8):773-82.
15. Activating killer cell immunoglobulin-like receptors 3DS1 and 2DS1 protect against developing the severe form of recurrent respiratory papillomatosis. Bonagura VR, etal., Hum Immunol. 2010 Feb;71(2):212-9. doi: 10.1016/j.humimm.2009.10.009. Epub 2009 Oct 25.
16. Prevalence and clinical characteristics of celiac disease in Downs syndrome in a US study. Book L, etal., Am J Med Genet. 2001 Jan 1;98(1):70-4.
17. HLA-DQ: Celiac disease vs inflammatory bowel disease. Bosca-Watts MM, etal., World J Gastroenterol. 2018 Jan 7;24(1):96-103. doi: 10.3748/wjg.v24.i1.96.
18. Increased occurrence of anti-AQP4 seropositivity and unique HLA Class II associations with neuromyelitis optica (NMO), among Muslim Arabs in Israel. Brill L, etal., J Neuroimmunol. 2016 Apr 15;293:65-70. doi: 10.1016/j.jneuroim.2016.02.006. Epub 2016 Feb 15.
19. Occurrence rates of HLA-DRB1, HLA-DQB1, and HLA-DPB1 alleles in patients suffering from vitiligo. Buc M, etal., Eur J Dermatol. 1998 Jan-Feb;8(1):13-5.
20. Two-domain MHC class II molecules form stable complexes with myelin basic protein 69-89 peptide that detect and inhibit rat encephalitogenic T cells and treat experimental autoimmune encephalomyelitis. Burrows GG, etal., J Immunol. 1998 Dec 1;161(11):5987-96.
21. HLA class II gene polymorphisms in antiphospholipid syndrome: haplotype analysis in 83 Caucasoid patients. Caliz R, etal., Rheumatology (Oxford). 2001 Jan;40(1):31-6.
22. Tumour necrosis factor microsatellites and HLA-DRB1*, HLA-DQA1*, and HLA-DQB1* alleles in Peruvian patients with rheumatoid arthritis. Castro F, etal., Ann Rheum Dis. 2001 Aug;60(8):791-5.
23. HLA class II allele polymorphism in an outbreak of chikungunya fever in Middle Andaman, India. Chaaithanya IK, etal., Immunology. 2013 Oct;140(2):202-10. doi: 10.1111/imm.12128.
24. Significantly increased occurrence of HLA-DQB1*0301 allele in patients with ocular cicatricial pemphigoid. Chan LS, etal., J Invest Dermatol. 1997 Feb;108(2):129-32.
25. The association between HLA-DQB1 polymorphism and antituberculosis drug-induced liver injury: a Case-Control Study. Chen R, etal., J Clin Pharm Ther. 2015 Feb;40(1):110-5. doi: 10.1111/jcpt.12211. Epub 2014 Sep 24.
26. Microarray studies on effects of Pneumocystis carinii infection on global gene expression in alveolar macrophages. Cheng BH, etal., BMC Microbiol. 2010 Apr 8;10:103.
27. Tumour necrosis factor-alpha single nucleotide polymorphisms are not independent of HLA class I in UK Caucasians with adult onset idiopathic inflammatory myopathies. Chinoy H, etal., Rheumatology (Oxford). 2007 Sep;46(9):1411-6. Epub 2007 Jun 22.
28. [Analysis of HLA-DQB1 polymorphism for patients with allergic rhinitis of Uygur and Han people in Xinjiang]. Cui Z, etal., Lin Chung Er Bi Yan Hou Tou Jing Wai Ke Za Zhi. 2011 Jul;25(14):645-8.
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PMID:32169954   PMID:32276965   PMID:32294451   PMID:32348763   PMID:32398640   PMID:32561639   PMID:32572241   PMID:32601220   PMID:32640051   PMID:32644975   PMID:32647184   PMID:32735605  
PMID:32773769   PMID:32788723   PMID:32888430   PMID:33022229   PMID:33057196   PMID:33242395   PMID:33462454   PMID:33724954   PMID:33952631   PMID:34166814   PMID:34183650   PMID:34236047  
PMID:34260270   PMID:34321274   PMID:34504495   PMID:34529935   PMID:34611166   PMID:34678150   PMID:34731608   PMID:34774519   PMID:34818549   PMID:34853467   PMID:34858415   PMID:34890253  
PMID:35064205   PMID:35099391   PMID:35140112   PMID:35143312   PMID:35236989   PMID:35355990   PMID:35464453   PMID:35523139   PMID:35523960   PMID:35545035   PMID:35608905   PMID:35840625  
PMID:36070798   PMID:36323311   PMID:36362253   PMID:36450771   PMID:36515659   PMID:36544781   PMID:36575806   PMID:36602872   PMID:36637239   PMID:36638190   PMID:36638785   PMID:36736322  
PMID:36807641   PMID:36889185   PMID:36961449   PMID:36996219   PMID:37055914   PMID:37083328   PMID:37219526   PMID:37327784   PMID:37365181   PMID:37424505   PMID:37427561   PMID:37480848  
PMID:37500293   PMID:37572655   PMID:37712758   PMID:37715782   PMID:37721965   PMID:37838330   PMID:37877672   PMID:37902602   PMID:37966111   PMID:37976163   PMID:37993717   PMID:38167945  
PMID:38330029   PMID:38355795   PMID:38384841   PMID:38413714   PMID:38426910   PMID:38821051   PMID:39436996   PMID:39476842   PMID:39604380  


Genomics

Comparative Map Data
H2-Ab1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391734,482,201 - 34,488,392 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1734,476,663 - 34,488,393 (+)EnsemblGRCm39 Ensembl
GRCm381734,263,227 - 34,269,418 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1734,257,689 - 34,269,419 (+)EnsemblGRCm38mm10GRCm38
MGSCv371734,400,172 - 34,406,363 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361733,871,432 - 33,877,605 (+)NCBIMGSCv36mm8
Celera1737,017,337 - 37,030,239 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1717.98NCBI
HLA-DQB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38632,659,467 - 32,666,657 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl632,659,467 - 32,668,383 (-)EnsemblGRCh38hg38GRCh38
GRCh37632,627,244 - 32,634,434 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36632,735,635 - 32,742,444 (-)NCBINCBI36Build 36hg18NCBI36
Celera634,177,338 - 34,182,264 (-)NCBICelera
Cytogenetic Map6p21.32NCBI
HuRef632,368,943 - 32,376,157 (-)NCBIHuRef
CHM1_1632,629,719 - 32,636,944 (-)NCBICHM1_1
T2T-CHM13v2.0632,482,491 - 32,489,842 (-)NCBIT2T-CHM13v2.0
RT1-Bb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8204,598,475 - 4,604,118 (-)NCBIGRCr8
mRatBN7.2204,596,558 - 4,602,201 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl204,596,559 - 4,607,597 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_WKY_Bbb_1.0205,193,861 - 5,199,480 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0204,043,726 - 4,049,367 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl204,039,413 - 4,049,711 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0206,123,272 - 6,128,913 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4204,730,559 - 4,736,201 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1204,730,786 - 4,736,413 (-)NCBI
Celera206,197,565 - 6,203,195 (-)NCBICelera
Cytogenetic Map20p12NCBI
LOC100972994
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2547,142,796 - 47,149,644 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1643,014,552 - 43,021,397 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0632,237,395 - 32,244,201 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1633,353,599 - 33,360,284 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl633,353,599 - 33,360,272 (-)Ensemblpanpan1.1panPan2
DLA-DQB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1122,305,307 - 2,307,711 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
ROS_Cfam_1.0122,520,814 - 2,526,447 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1122,243,878 - 2,249,524 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0122,325,185 - 2,330,844 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0122,399,342 - 2,404,990 (-)NCBIUU_Cfam_GSD_1.0
LOC101703821
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475423,895,607 - 23,906,713 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475423,895,509 - 23,902,487 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:925
Count of miRNA genes:542
Interacting mature miRNAs:636
Transcripts:ENSMUST00000040828, ENSMUST00000173103, ENSMUST00000174875
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10045977Tir9_mtrypanosome infection response 9 (mouse)Not determined172787811943885114Mouse
26884379Skwq5_mskull length QTL 5, 5 week (mouse)173311897454107028Mouse
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17397489048866091Mouse
11075105Modc1_mmodifier of Odc1 (mouse)172771579245622654Mouse
1300995Fembrs4_mfemur breaking strength 4 (mouse)Not determined171506165249061760Mouse
15039348Nmrs37_mNAFLD-associated magnetic resonance shift 37 (mouse)172781520961815209Mouse
4141357Mrdq1_mmodifier of retinal degeneration QTL 1 (mouse)Not determined3098790348039703Mouse
1302152Skull25_mskull morphology 25 (mouse)Not determined171681972150819843Mouse
1302028Asbb3_mautoimmune susceptibility in C57BL/6J and BALB/c 3 (mouse)Not determined171087811944878219Mouse
15039354Nmrs36_mNAFLD-associated magnetic resonance shift 36 (mouse)171914502553145025Mouse
4141215Mnic1_mmacronutrient intake, carbohydrate 1 (mouse)Not determined485475245670266Mouse
1300787Cd8mts5_mCD8 memory T cell subset 5 (mouse)Not determined17858491442585149Mouse
13524847Asrq8a_macoustic startle response 8a (mouse)171264696146646961Mouse
1300914Pcir4_mperiosteal circumference 4 (mouse)Not determined171506165249061760Mouse
13452396Leusq3_mleucocytosis susceptibility QTL 3 (mouse)171746220851462345Mouse
13452399Leusq6_mleucocytosis susceptibility QTL 6 (mouse)171746220851462345Mouse
1300535Char3_mP. chabaudi malaria resistance QTL 3 (mouse)Not determined171746220851462345Mouse
4140955Plgr1_mplague resistance locus 1 (mouse)Not determined3103350065033630Mouse
1302070Tbbmd7_mtotal body bone mineral density 7 (mouse)Not determined171506165249061760Mouse
10412214Sxbq3_mSGC/Knj cross B6 QTL 3 (mouse)Not determined171746220851462345Mouse
10412083Sm2_msusceptibility to Schistosoma mansoni infection 2 (mouse)Not determined171702994351030078Mouse
10412204Bbaa29_mB.burgdorferi-associated arthritis 29 (mouse)Not determined172605118560051352Mouse
10043949Pbft7_mpercent body fat 7 (mouse)Not determined17689393640893936Mouse
4141067Hbnr2_mHeligmosomoides bakeri nematode resistance 2 (mouse)Not determined1188597145886119Mouse
12904946Tammq8_mtibialis anterior muscle mass QTL 8 (mouse)171245178746451787Mouse
10412198Sst5_msusceptibility to tuberculosis 5 (mouse)Not determined172507658355712970Mouse
4142342Lfnq4_mlung function QTL 4 (mouse)Not determined1120648439364059Mouse
10412196Bbaa28_mB.burgdorferi-associated arthritis 28 (mouse)Not determined172558491443976235Mouse
1301935Skull24_mskull morphology 24 (mouse)Not determined17858491442585149Mouse
1302189Dps3_mdelta power in slow-wave sleep 3 (mouse)Not determined173381972136250180Mouse
1301331Lbw1_mlupus NZB x NZW 1 (mouse)Not determined171841835752420983Mouse
1301840Ssial4_msusceptibility to sialadenitiss 4 (mouse)Not determined171817541252178214Mouse
1300692Blmpf1_mbleomycin-induced pulmonary fibrosis 1 (mouse)Not determined173206165237644775Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17485475247885665Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined171008134086996400Mouse
12880399Sst6_msusceptibility to tuberculosis 6 (mouse)173446220834552681Mouse
1300703Uvbi2_mUVB induced immunosuppression 2 (mouse)Not determined172862240662622654Mouse
11038694Pas19_mpulmonary adenoma susceptibility 19 (mouse)172971116434754437Mouse
1301056Pas2_mpulmonary adenoma susceptibility 2 (mouse)Not determined171842214152424327Mouse
1301454Eae5_msusceptibility to experimental allergic encephalomyelitis 5 (mouse)Not determined172461275058612864Mouse
14747010Mancz14_mmandible centroid size 14 (mouse)171199818445998184Mouse
1302005Loco2_mlocomotor activity 2 (mouse)Not determined172688497260885114Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined485475265637357Mouse
1300602Eye2_meye weight 2 (mouse)Not determined172650533741105037Mouse
25394538Skmw84_mskeletal muscle weight 84, TA (mouse)173266042635520036Mouse
10412276Leci2_mleukocyte endothelial cell interactions 2 (mouse)Not determined17334817537348299Mouse
1301759Sles1_msystemic lupus erythmatosus suppressor 1 (mouse)Not determined173421989035175937Mouse
1302140Wta4_mweight adult 4 (mouse)Not determined171681972150819843Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17485475246469702Mouse
1558886Lgth9_mbody length 9 (mouse)Not determined171506165249061760Mouse
1558758Kcal2_mkilocalorie 2 (mouse)Not determined172640101252911704Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171228621183361768Mouse
11081168Tir7_mtrypanosome infection response 7 (mouse)171412337248123496Mouse
1300589Myaa2_mmodifier of Yaa 2 (mouse)Not determined173013255564132666Mouse

Markers in Region
H2-Ab1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv371734,400,035 - 34,400,290UniSTSGRCm37
Celera1737,017,200 - 37,017,455UniSTS
Cytogenetic Map17B1UniSTS
cM Map1718.64UniSTS
cM Map1718.64UniSTS
AI845868  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381734,269,152 - 34,269,277UniSTSGRCm38
MGSCv371734,406,097 - 34,406,222UniSTSGRCm37
Celera1737,029,973 - 37,030,098UniSTS
Cytogenetic Map17B1UniSTS
cM Map1718.64UniSTS
Whitehead/MRC_RH17455.25UniSTS
D17Dgm2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381734,264,832 - 34,265,032UniSTSGRCm38
MGSCv371734,401,777 - 34,401,977UniSTSGRCm37
Celera1737,018,942 - 37,019,142UniSTS
Cytogenetic Map17B1UniSTS
cM Map1718.63UniSTS
H2-Ab1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map17B1UniSTS
cM Map1718.64UniSTS
H2-Ab1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381734,263,090 - 34,263,345UniSTSGRCm38
MGSCv371734,400,035 - 34,400,290UniSTSGRCm37
Celera1737,017,200 - 37,017,455UniSTS
Cytogenetic Map17B1UniSTS
cM Map1718.64UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_207105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF027865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF065912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF065913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF119251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF119252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF293058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF293060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF293061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH002010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH002011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH002012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH002013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH002014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ492952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ492953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ492983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ492984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ492985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ492986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ492987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ492988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ492989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ492990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ492991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ492992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ492993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ492994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ492995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ492996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ492997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ492998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ492999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ493000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ493001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ748564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ748565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ748566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ748567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ748568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ748569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ748570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ748571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ748572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ748573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ748574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ748575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ748576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ748577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ748578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ748579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ748580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ748581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ748582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ748583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ748584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ748585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ748586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK156899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK172409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY303784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY303785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY452202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY740465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY740468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY740470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY740471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY740476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY740482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB056841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC008168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC010322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC057998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY205244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK330363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR974422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU424424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU468138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  K01143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KU885979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M13537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M13538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M13539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M13540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M13541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M15848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M20195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M21932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M27456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M27457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M27458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M29248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M31825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M54876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M60562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M66213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MF629198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MF629216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MF629224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MF629225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MF629226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MF629227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MF629228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MF629229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MF629230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MF629231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MF629232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MF629233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MF629234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MF629235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MF629236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MF629237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  V01527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X54426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X86151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X86152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X86153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y13074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y13078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y13082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y13083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000040828   ⟹   ENSMUSP00000041008
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1734,482,183 - 34,488,393 (+)Ensembl
GRCm38.p6 Ensembl1734,263,209 - 34,269,419 (+)Ensembl
Ensembl Acc Id: ENSMUST00000173103
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1734,486,076 - 34,487,008 (+)Ensembl
GRCm38.p6 Ensembl1734,267,102 - 34,268,034 (+)Ensembl
Ensembl Acc Id: ENSMUST00000174875
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1734,487,244 - 34,488,368 (+)Ensembl
GRCm38.p6 Ensembl1734,268,270 - 34,269,394 (+)Ensembl
Ensembl Acc Id: ENSMUST00000235980
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1734,482,235 - 34,484,361 (+)Ensembl
GRCm38.p6 Ensembl1734,263,261 - 34,265,387 (+)Ensembl
Ensembl Acc Id: ENSMUST00000236643
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1734,482,305 - 34,487,130 (+)Ensembl
GRCm38.p6 Ensembl1734,263,331 - 34,268,156 (+)Ensembl
Ensembl Acc Id: ENSMUST00000237342   ⟹   ENSMUSP00000157600
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1734,482,224 - 34,486,591 (+)Ensembl
GRCm38.p6 Ensembl1734,263,250 - 34,267,617 (+)Ensembl
Ensembl Acc Id: ENSMUST00000237429
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1734,476,663 - 34,486,589 (+)Ensembl
GRCm38.p6 Ensembl1734,257,689 - 34,267,615 (+)Ensembl
Ensembl Acc Id: ENSMUST00000237866   ⟹   ENSMUSP00000157806
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1734,482,224 - 34,488,384 (+)Ensembl
GRCm38.p6 Ensembl1734,263,250 - 34,269,410 (+)Ensembl
RefSeq Acc Id: NM_207105   ⟹   NP_996988
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391734,482,201 - 34,488,392 (+)NCBI
GRCm381734,263,227 - 34,269,418 (+)ENTREZGENE
MGSCv371734,400,172 - 34,406,363 (+)RGD
Celera1737,017,337 - 37,030,239 (+)RGD
cM Map17 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_996988 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA20652 (Get FASTA)   NCBI Sequence Viewer  
  AAA39541 (Get FASTA)   NCBI Sequence Viewer  
  AAA39542 (Get FASTA)   NCBI Sequence Viewer  
  AAA39543 (Get FASTA)   NCBI Sequence Viewer  
  AAA39544 (Get FASTA)   NCBI Sequence Viewer  
  AAA39545 (Get FASTA)   NCBI Sequence Viewer  
  AAA39546 (Get FASTA)   NCBI Sequence Viewer  
  AAA39547 (Get FASTA)   NCBI Sequence Viewer  
  AAA39548 (Get FASTA)   NCBI Sequence Viewer  
  AAA39628 (Get FASTA)   NCBI Sequence Viewer  
  AAA39629 (Get FASTA)   NCBI Sequence Viewer  
  AAA39632 (Get FASTA)   NCBI Sequence Viewer  
  AAA39633 (Get FASTA)   NCBI Sequence Viewer  
  AAA39634 (Get FASTA)   NCBI Sequence Viewer  
  AAA39635 (Get FASTA)   NCBI Sequence Viewer  
  AAA39637 (Get FASTA)   NCBI Sequence Viewer  
  AAA57290 (Get FASTA)   NCBI Sequence Viewer  
  AAA57291 (Get FASTA)   NCBI Sequence Viewer  
  AAA57292 (Get FASTA)   NCBI Sequence Viewer  
  AAB07683 (Get FASTA)   NCBI Sequence Viewer  
  AAB81531 (Get FASTA)   NCBI Sequence Viewer  
  AAC17910 (Get FASTA)   NCBI Sequence Viewer  
  AAC17911 (Get FASTA)   NCBI Sequence Viewer  
  AAD31754 (Get FASTA)   NCBI Sequence Viewer  
  AAD31755 (Get FASTA)   NCBI Sequence Viewer  
  AAG42224 (Get FASTA)   NCBI Sequence Viewer  
  AAG42225 (Get FASTA)   NCBI Sequence Viewer  
  AAG42226 (Get FASTA)   NCBI Sequence Viewer  
  AAH08168 (Get FASTA)   NCBI Sequence Viewer  
  AAH10322 (Get FASTA)   NCBI Sequence Viewer  
  AAH57998 (Get FASTA)   NCBI Sequence Viewer  
  AAO32765 (Get FASTA)   NCBI Sequence Viewer  
  AAP69831 (Get FASTA)