Taf7l (TATA-box binding protein associated factor 7 like) - Rat Genome Database

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Gene: Taf7l (TATA-box binding protein associated factor 7 like) Mus musculus
Analyze
Symbol: Taf7l
Name: TATA-box binding protein associated factor 7 like
RGD ID: 1557972
MGI Page MGI
Description: Predicted to contribute to RNA polymerase II general transcription initiation factor activity. Acts upstream of or within flagellated sperm motility and spermatid development. Located in cytoplasm and male germ cell nucleus. Is expressed in bladder; brown fat; ovary; testis; and ureter. Orthologous to human TAF7L (TATA-box binding protein associated factor 7 like).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4933438I11Rik; 50kDa; MGC124181; Taf2; Taf2q; TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor; TATA box binding protein (TBP)-associated factor, RNA polymerase II, Q; TATA box binding protein-associated factor RNA polymerase II subunit Q; TATA box-binding protein-associated factor 50 kDa; transcription initiation factor TFIID 50 kDa subunit; transcription initiation factor TFIID subunit 7-like
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X133,360,865 - 133,377,254 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX133,360,867 - 133,377,239 (-)EnsemblGRCm39 Ensembl
GRCm38X134,460,116 - 134,476,505 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX134,460,118 - 134,476,490 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X130,994,655 - 131,011,029 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X129,806,469 - 129,822,644 (-)NCBIMGSCv36mm8
CeleraX117,338,620 - 117,355,092 (-)NCBICelera
Cytogenetic MapXE3NCBI
cM MapX56.18NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. Mouse MP Annotation Import Pipeline RGD automated import pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11279525   PMID:12477932   PMID:12665565   PMID:15618518   PMID:15927180   PMID:16118233   PMID:16141072   PMID:16141073  
PMID:17242199   PMID:17660561   PMID:18287559   PMID:19864314   PMID:19884258   PMID:21873635   PMID:22190708   PMID:22448252   PMID:22530760   PMID:23326641   PMID:24082143   PMID:24876128  
PMID:26120033   PMID:26589352   PMID:27072294   PMID:29617656   PMID:31065688   PMID:31932482   PMID:32325033   PMID:34174788   PMID:35554494  


Genomics

Comparative Map Data
Taf7l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X133,360,865 - 133,377,254 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX133,360,867 - 133,377,239 (-)EnsemblGRCm39 Ensembl
GRCm38X134,460,116 - 134,476,505 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX134,460,118 - 134,476,490 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X130,994,655 - 131,011,029 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X129,806,469 - 129,822,644 (-)NCBIMGSCv36mm8
CeleraX117,338,620 - 117,355,092 (-)NCBICelera
Cytogenetic MapXE3NCBI
cM MapX56.18NCBI
TAF7L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X101,268,257 - 101,293,083 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX101,268,253 - 101,293,057 (-)EnsemblGRCh38hg38GRCh38
GRCh37X100,523,245 - 100,548,071 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X100,409,897 - 100,434,701 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X100,329,386 - 100,354,190NCBI
CeleraX101,042,015 - 101,067,533 (-)NCBICelera
Cytogenetic MapXq22.1NCBI
HuRefX90,326,711 - 90,351,477 (-)NCBIHuRef
CHM1_1X100,417,044 - 100,441,569 (-)NCBICHM1_1
T2T-CHM13v2.0X99,712,369 - 99,751,819 (-)NCBIT2T-CHM13v2.0
Taf7l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X101,953,508 - 101,968,336 (-)NCBIGRCr8
mRatBN7.2X97,660,222 - 97,675,241 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX97,660,222 - 97,675,023 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX99,334,442 - 99,349,219 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X102,844,839 - 102,859,624 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X100,347,599 - 100,362,376 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X105,292,338 - 105,308,554 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX105,292,338 - 105,308,554 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X105,183,229 - 105,199,248 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X121,935,672 - 121,950,719 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX98,701,715 - 98,716,468 (-)NCBICelera
Cytogenetic MapXq32NCBI
Taf7l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555037,429,876 - 7,451,051 (-)NCBIChiLan1.0ChiLan1.0
TAF7L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X100,868,104 - 100,897,866 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X100,871,714 - 100,897,257 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X90,471,354 - 90,496,618 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X100,607,488 - 100,631,301 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX100,607,488 - 100,631,301 (-)Ensemblpanpan1.1panPan2
TAF7L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X75,219,448 - 75,238,309 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX75,220,248 - 75,239,041 (-)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.0X76,642,213 - 76,661,089 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX76,642,205 - 76,661,681 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X74,203,965 - 74,222,831 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X75,864,367 - 75,883,225 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X75,626,775 - 75,645,651 (-)NCBIUU_Cfam_GSD_1.0
Taf7l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X63,096,626 - 63,134,131 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936813357,571 - 372,736 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936813357,571 - 378,479 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TAF7L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX82,930,266 - 82,951,224 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X82,930,258 - 82,951,065 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X90,962,646 - 90,983,465 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TAF7L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X89,610,238 - 89,636,238 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX89,611,208 - 89,635,921 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606514,526,792 - 14,552,570 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Taf7l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249021,243,817 - 1,256,209 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249021,239,776 - 1,267,443 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Taf7l
436 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:556
Count of miRNA genes:416
Interacting mature miRNAs:457
Transcripts:ENSMUST00000009740, ENSMUST00000113223, ENSMUST00000131311
Prediction methods:Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13208552Wght12_mweight 12 (mouse)X94043606149782996Mouse
13208556Lgth14_mbody length 14 (mouse)X94043606149782996Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X54045360148782996Mouse
25314309Syncl5_msynaptonemal complex length 5 (mouse)X121909697152582996Mouse
13824981Svwq2_mseminal vesicle weight QTL 2 (mouse)X128900749153782996Mouse
1301209Cia19_mcollagen induced arthritis 19 (mouse)Not determinedX120993165160213038Mouse
10412164Cmv2_mcytomegalovirus resistance 2 (mouse)Not determinedX125685149159685269Mouse
1357823Spha3_msperm head anomaly 3 (mouse)Not determinedX102055848162758941Mouse
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
4141665Mhysq2_mmale hybrid sterility QTL 2 (mouse)Not determined71453852139203212Mouse

Markers in Region
G65211  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X134,466,081 - 134,466,628UniSTSGRCm38
MGSCv37X131,000,620 - 131,001,167UniSTSGRCm37
CeleraX117,344,584 - 117,345,131UniSTS
Cytogenetic MapXE3UniSTS
cM MapX UniSTS
G65785  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic MapXE3UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000009740   ⟹   ENSMUSP00000009740
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX133,360,867 - 133,377,239 (-)Ensembl
GRCm38.p6 EnsemblX134,460,118 - 134,476,490 (-)Ensembl
Ensembl Acc Id: ENSMUST00000113223   ⟹   ENSMUSP00000108849
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX133,361,307 - 133,375,742 (-)Ensembl
GRCm38.p6 EnsemblX134,460,558 - 134,474,993 (-)Ensembl
Ensembl Acc Id: ENSMUST00000131311
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX133,370,623 - 133,375,737 (-)Ensembl
GRCm38.p6 EnsemblX134,469,874 - 134,474,988 (-)Ensembl
RefSeq Acc Id: NM_028958   ⟹   NP_083234
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X133,360,865 - 133,377,239 (-)NCBI
GRCm38X134,460,116 - 134,476,490 (-)NCBI
MGSCv37X130,994,655 - 131,011,029 (-)RGD
CeleraX117,338,620 - 117,355,092 (-)RGD
cM MapX ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006528610   ⟹   XP_006528673
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X133,360,867 - 133,377,254 (-)NCBI
GRCm38X134,460,118 - 134,476,505 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006528611   ⟹   XP_006528674
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X133,360,867 - 133,375,788 (-)NCBI
GRCm38X134,460,118 - 134,475,039 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006528613   ⟹   XP_006528676
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X133,360,867 - 133,375,783 (-)NCBI
GRCm38X134,460,118 - 134,475,034 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006528615   ⟹   XP_006528678
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X133,360,867 - 133,373,716 (-)NCBI
GRCm38X134,460,118 - 134,472,967 (-)NCBI
Sequence:
RefSeq Acc Id: NP_083234   ⟸   NM_028958
- UniProtKB: A2AFB9 (UniProtKB/Swiss-Prot),   Q99MW7 (UniProtKB/Swiss-Prot),   Q9D3R9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006528673   ⟸   XM_006528610
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006528674   ⟸   XM_006528611
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006528676   ⟸   XM_006528613
- Peptide Label: isoform X3
- UniProtKB: B1AV36 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006528678   ⟸   XM_006528615
- Peptide Label: isoform X4
- Sequence:
Ensembl Acc Id: ENSMUSP00000108849   ⟸   ENSMUST00000113223
Ensembl Acc Id: ENSMUSP00000009740   ⟸   ENSMUST00000009740
Protein Domains
TAFII55 protein conserved region

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9D3R9-F1-model_v2 AlphaFold Q9D3R9 1-471 view protein structure

Promoters
RGD ID:6846421
Promoter ID:MM_KWN:61863
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:NM_028958
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X131,010,601 - 131,011,101 (-)MPROMDB
RGD ID:13681352
Promoter ID:EPDNEW_M24825
Type:single initiation site
Name:Taf7l_1
Description:Mus musculus TATA-box binding protein associated factor 7 like, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X134,476,486 - 134,476,546EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1921719 AgrOrtholog
Ensembl Genes ENSMUSG00000009596 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000009740 ENTREZGENE
  ENSMUST00000009740.9 UniProtKB/Swiss-Prot
  ENSMUST00000113223 ENTREZGENE
  ENSMUST00000113223.3 UniProtKB/TrEMBL
InterPro TAF7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TAFII55_prot_cons_reg UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:74469 UniProtKB/Swiss-Prot
MGD MGI:1921719 ENTREZGENE
NCBI Gene 74469 ENTREZGENE
PANTHER PTHR12228 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 7-LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam TAFII55_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Taf7l PhenoGen
SMART TAFII55_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2AFB9 ENTREZGENE
  B1AV36 ENTREZGENE, UniProtKB/TrEMBL
  Q99MW7 ENTREZGENE
  Q9D3R9 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A2AFB9 UniProtKB/Swiss-Prot
  Q99MW7 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-17 Taf7l  TATA-box binding protein associated factor 7 like    TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor  Symbol and/or name change 5135510 APPROVED