Magee2 (MAGE family member E2) - Rat Genome Database

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Gene: Magee2 (MAGE family member E2) Mus musculus
Analyze
Symbol: Magee2
Name: MAGE family member E2
RGD ID: 1557922
MGI Page MGI
Description: Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in several structures, including brain; dorsal root ganglion; egg cylinder; liver; and reproductive system. Orthologous to human MAGEE2 (MAGE family member E2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 9630059J11Rik; BB131182; Mage-e; Mage-e2; melanoma antigen, family E, 2; melanoma-associated antigen E2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X103,898,558 - 103,900,873 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX103,898,558 - 103,900,873 (-)EnsemblGRCm39 Ensembl
GRCm38X104,854,952 - 104,857,267 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX104,854,952 - 104,857,267 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X102,050,291 - 102,052,606 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X101,057,671 - 101,059,875 (-)NCBIMGSCv36mm8
CeleraX91,728,756 - 91,731,078 (-)NCBICelera
Cytogenetic MapXDNCBI
cM MapX46.77NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11454705   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:21267068   PMID:21873635   PMID:27720483  
PMID:31143371   PMID:34464968   PMID:38355793  


Genomics

Comparative Map Data
Magee2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X103,898,558 - 103,900,873 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX103,898,558 - 103,900,873 (-)EnsemblGRCm39 Ensembl
GRCm38X104,854,952 - 104,857,267 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX104,854,952 - 104,857,267 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X102,050,291 - 102,052,606 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X101,057,671 - 101,059,875 (-)NCBIMGSCv36mm8
CeleraX91,728,756 - 91,731,078 (-)NCBICelera
Cytogenetic MapXDNCBI
cM MapX46.77NCBI
MAGEE2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X75,782,987 - 75,785,254 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX75,782,987 - 75,785,254 (-)EnsemblGRCh38hg38GRCh38
GRCh37X75,002,822 - 75,005,089 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X74,919,548 - 74,921,796 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X74,785,843 - 74,788,092NCBI
CeleraX75,286,151 - 75,288,407 (-)NCBICelera
Cytogenetic MapXq13.3NCBI
HuRefX68,636,741 - 68,638,996 (-)NCBIHuRef
CHM1_1X74,895,669 - 74,897,925 (-)NCBICHM1_1
T2T-CHM13v2.0X74,216,673 - 74,218,940 (-)NCBIT2T-CHM13v2.0
Magee2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X73,951,433 - 74,010,525 (+)NCBIGRCr8
mRatBN7.2X69,885,751 - 69,944,824 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX69,942,533 - 69,944,657 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX71,451,596 - 71,453,720 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X74,951,881 - 74,954,005 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X72,511,457 - 72,513,581 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X75,737,684 - 75,795,206 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX75,792,931 - 75,795,055 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X76,537,710 - 76,595,148 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X92,944,523 - 92,946,647 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX71,286,892 - 71,289,016 (+)NCBICelera
Cytogenetic MapXq22NCBI
Magee2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555621,804,437 - 1,807,099 (-)NCBIChiLan1.0ChiLan1.0
MAGEE2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X75,429,205 - 75,431,629 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X75,432,855 - 75,435,242 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X65,030,659 - 65,033,059 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X75,141,998 - 75,144,309 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX75,142,500 - 75,144,068 (-)Ensemblpanpan1.1panPan2
MAGEE2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X58,877,193 - 58,879,518 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX58,877,722 - 58,879,293 (-)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.0X60,109,448 - 60,111,767 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX60,109,982 - 60,111,553 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X57,797,220 - 57,799,539 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X59,417,054 - 59,419,373 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X59,015,922 - 59,018,241 (-)NCBIUU_Cfam_GSD_1.0
Magee2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X43,256,515 - 43,258,796 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366831,689,463 - 1,691,034 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366831,688,981 - 1,691,250 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MAGEE2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX60,709,534 - 60,711,829 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X60,707,490 - 60,711,883 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
MAGEE2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X65,244,718 - 65,247,582 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX65,245,359 - 65,246,930 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606716,359,398 - 16,362,396 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Magee2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248365,040,440 - 5,042,334 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Magee2
57 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:185
Count of miRNA genes:166
Interacting mature miRNAs:173
Transcripts:ENSMUST00000033575
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141630Gct6_mgranulosa cell tumorigenesis 6 (mouse)Not determined47179121129764756Mouse
13208552Wght12_mweight 12 (mouse)X94043606149782996Mouse
4141803Lmr30_mleishmaniasis resistance 30 (mouse)Not determined85062606119062720Mouse
13208556Lgth14_mbody length 14 (mouse)X94043606149782996Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X54045360148782996Mouse
11075102Modc2_mmodifier of Odc2 (mouse)X80189914114190059Mouse
1357500Mdmsc6_mmodifier of muscularity 6 (mouse)Not determinedX75306671109306758Mouse
1357823Spha3_msperm head anomaly 3 (mouse)Not determinedX102055848162758941Mouse
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
4141665Mhysq2_mmale hybrid sterility QTL 2 (mouse)Not determined71453852139203212Mouse

Markers in Region
BB131182  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X104,854,977 - 104,855,099UniSTSGRCm38
MGSCv37X102,050,316 - 102,050,438UniSTSGRCm37
CeleraX91,728,781 - 91,728,903UniSTS
Cytogenetic MapXC3UniSTS
UniSTS:238063  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X104,855,724 - 104,855,818UniSTSGRCm38
MGSCv37X102,051,063 - 102,051,157UniSTSGRCm37
CeleraX91,729,535 - 91,729,629UniSTS
Cytogenetic MapXC3UniSTS
UniSTS:493381  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X104,855,472 - 104,857,118UniSTSGRCm38
MGSCv37X102,050,811 - 102,052,457UniSTSGRCm37
CeleraX91,729,283 - 91,730,929UniSTS
Cytogenetic MapXC3UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000033575   ⟹   ENSMUSP00000033575
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX103,898,558 - 103,900,873 (-)Ensembl
GRCm38.p6 EnsemblX104,854,952 - 104,857,267 (-)Ensembl
RefSeq Acc Id: NM_053206   ⟹   NP_444436
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X103,898,558 - 103,900,873 (-)NCBI
GRCm38X104,854,952 - 104,857,267 (-)ENTREZGENE
MGSCv37X102,050,291 - 102,052,606 (-)RGD
CeleraX91,728,756 - 91,731,078 (-)RGD
cM MapX ENTREZGENE
Sequence:
RefSeq Acc Id: NP_444436   ⟸   NM_053206
- UniProtKB: Q52KG3 (UniProtKB/TrEMBL),   Q8CBC3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000033575   ⟸   ENSMUST00000033575
Protein Domains
MAGE

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q52KG3-F1-model_v2 AlphaFold Q52KG3 1-523 view protein structure

Promoters
RGD ID:6845931
Promoter ID:MM_KWN:61472
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   ES_Cell
Transcripts:NM_053206
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X102,052,226 - 102,052,726 (-)MPROMDB
RGD ID:13681156
Promoter ID:EPDNEW_M24727
Type:initiation region
Name:Magee2_1
Description:Mus musculus melanoma antigen, family E, 2 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X104,857,215 - 104,857,275EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2148316 AgrOrtholog
Ensembl Genes ENSMUSG00000031224 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000033575 ENTREZGENE
  ENSMUST00000033575.7 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.1200 UniProtKB/TrEMBL
  1.10.10.1210 UniProtKB/TrEMBL
InterPro MAGE UniProtKB/TrEMBL
  MAGE UniProtKB/TrEMBL
  MAGE_WH1 UniProtKB/TrEMBL
  MAGE_WH2 UniProtKB/TrEMBL
KEGG Report mmu:272790 UniProtKB/TrEMBL
MGD MGI:2148316 ENTREZGENE
NCBI Gene Magee2 ENTREZGENE
PANTHER MELANOMA-ASSOCIATED ANTIGEN E2 UniProtKB/TrEMBL
  PTHR11736 UniProtKB/TrEMBL
Pfam MAGE UniProtKB/TrEMBL
PhenoGen Magee2 PhenoGen
PROSITE MAGE UniProtKB/TrEMBL
SMART MAGE UniProtKB/TrEMBL
UniProt Q52KG3 ENTREZGENE, UniProtKB/TrEMBL
  Q8CBC3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-08-21 Magee2  MAGE family member E2  Magee2  melanoma antigen, family E, 2  Symbol and/or name change 5135510 APPROVED
2024-08-21 Magee2  melanoma antigen, family E, 2  Magee2  MAGE family member E2  Symbol and/or name change 5135510 APPROVED
2020-09-01 Magee2  MAGE family member E2  Magee2  melanoma antigen, family E, 2  Symbol and/or name change 5135510 APPROVED