Cd209b (CD209b antigen) - Rat Genome Database

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Gene: Cd209b (CD209b antigen) Mus musculus
Analyze
Symbol: Cd209b
Name: CD209b antigen
RGD ID: 1557900
MGI Page MGI
Description: Enables (1->3)-beta-D-glucan binding activity and D-mannose binding activity. Acts upstream of or within several processes, including detection of other organism; phagocytosis, recognition; and positive regulation of tumor necrosis factor production. Located in external side of plasma membrane. Human ortholog(s) of this gene implicated in Coronavirus infectious disease (multiple); aspergillosis; dengue disease (multiple); human immunodeficiency virus infectious disease (multiple); and tuberculosis (multiple). Orthologous to several human genes including CD209 (CD209 molecule).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1810030I22Rik; CD209 antigen-like protein B; DC-SIGN-related protein 1; DC-SIGNR1; mSI; mSIGNR1; OtB7; SI; SIGNR1
RGD Orthologs
Human
Rat
Bonobo
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3983,967,655 - 3,976,841 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl83,967,655 - 3,976,844 (-)EnsemblGRCm39 Ensembl
GRCm3883,917,655 - 3,926,841 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl83,917,655 - 3,926,844 (-)EnsemblGRCm38mm10GRCm38
MGSCv3783,917,657 - 3,926,814 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3683,917,657 - 3,926,814 (-)NCBIMGSCv36mm8
Celera83,005,643 - 3,014,800 (-)NCBICelera
Cytogenetic Map8A1.1NCBI
cM Map81.92NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Homozygous L-SIGN (CLEC4M) plays a protective role in SARS coronavirus infection. Chan VS, etal., Nat Genet. 2006 Jan;38(1):38-46. doi: 10.1038/ng1698. Epub 2005 Dec 20.
2. Association of CD209 and CD209L polymorphisms with tuberculosis infection in a Northeastern Brazilian population. da Silva RC, etal., Mol Biol Rep. 2014 Aug;41(8):5449-57. doi: 10.1007/s11033-014-3416-y. Epub 2014 May 30.
3. The allele 4 of neck region liver-lymph node-specific ICAM-3-grabbing integrin variant is associated with spontaneous clearance of hepatitis C virus and decrease of viral loads. Ezzikouri S, etal., Clin Microbiol Infect. 2014 May;20(5):O325-32. doi: 10.1111/1469-0691.12403. Epub 2013 Nov 6.
4. Association of CD209L tandem repeats polymorphism with susceptibility to human immunodeficiency virus-1 infection, disease progression, and treatment outcomes: a Moroccan cohort study. Fayssel N, etal., Clin Microbiol Infect. 2015 May;21(5):513.e1-5. doi: 10.1016/j.cmi.2014.12.012. Epub 2014 Dec 27.
5. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
6. Role of polymorphisms of the inflammatory response genes and DC-SIGNR in genetic susceptibility to SARS and other infections. Khoo US, etal., Hong Kong Med J. 2008 Aug;14 Suppl 4:31-5.
7. Specific ICAM-3 grabbing nonintegrin-related 1 (SIGNR1) expressed by marginal zone macrophages is essential for defense against pulmonary Streptococcus pneumoniae infection. Koppel EA, etal., Eur J Immunol. 2005 Oct;35(10):2962-9. doi: 10.1002/eji.200526216.
8. SIGN-R1 contributes to protection against lethal pneumococcal infection in mice. Lanoue A, etal., J Exp Med. 2004 Dec 6;200(11):1383-93. doi: 10.1084/jem.20040795.
9. Repeat-region polymorphisms in the gene for the dendritic cell-specific intercellular adhesion molecule-3-grabbing nonintegrin-related molecule: effects on HIV-1 susceptibility. Liu H, etal., J Infect Dis. 2006 Mar 1;193(5):698-702. doi: 10.1086/499820. Epub 2006 Jan 27.
10. [Relationship between intrauterine infection and the gene polymorphism of DC-SIGN/DC-SIGNR in the pregnant women of HBV positive]. Liu SR, etal., Zhonghua Shi Yan He Lin Chuang Bing Du Xue Za Zhi. 2011 Oct;25(5):331-3.
11. MGDs mouse GO annotations MGD data from the GO Consortium
12. MGD IEA MGD IEA
13. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
14. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
15. Mouse MP Annotation Import Pipeline RGD automated import pipeline
16. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
17. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
18. The C-type lectin SIGNR1 binds Schistosoma mansoni antigens in vitro, but SIGNR1-deficient mice have normal responses during schistosome infection. Saunders SP, etal., Infect Immun. 2009 Jan;77(1):399-404. doi: 10.1128/IAI.00762-08. Epub 2008 Nov 3.
19. Lack of support for an association between CLEC4M homozygosity and protection against SARS coronavirus infection. Tang NL, etal., Nat Genet. 2007 Jun;39(6):691-2; author reply 694-6. doi: 10.1038/ng0607-691.
20. A murine DC-SIGN homologue contributes to early host defense against Mycobacterium tuberculosis. Tanne A, etal., J Exp Med. 2009 Sep 28;206(10):2205-20. doi: 10.1084/jem.20090188. Epub 2009 Sep 21.
21. Mice lacking SIGNR1 have stronger T helper 1 responses to Mycobacterium tuberculosis. Wieland CW, etal., Microbes Infect. 2007 Feb;9(2):134-41. doi: 10.1016/j.micinf.2006.10.018. Epub 2006 Dec 14.
22. The nine-repeat DC-SIGNR isoform is associated with increased HIV-RNA loads and HIV sexual transmission. Xu L, etal., J Clin Immunol. 2010 May;30(3):402-7. doi: 10.1007/s10875-010-9376-7. Epub 2010 Mar 9.
23. Murine SIGNR1 (CD209b) Contributes to the Clearance of Uropathogenic Escherichia coli During Urinary Tract Infections. Zhang Y, etal., Front Cell Infect Microbiol. 2020 Jan 10;9:457. doi: 10.3389/fcimb.2019.00457. eCollection 2019.
24. Lack of support for an association between CLEC4M homozygosity and protection against SARS coronavirus infection. Zhi L, etal., Nat Genet. 2007 Jun;39(6):692-4; author reply 694-6. doi: 10.1038/ng0607-692.
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11581173   PMID:11581396   PMID:12137941   PMID:12351402   PMID:14707091   PMID:15136555   PMID:15588578   PMID:16141072   PMID:16141073  
PMID:16386217   PMID:16682406   PMID:17617634   PMID:18343501   PMID:19520061   PMID:19617348   PMID:20130211   PMID:20488784   PMID:20835248   PMID:21257969   PMID:21267068   PMID:21400494  
PMID:21873635   PMID:21899704   PMID:22207132   PMID:22331432   PMID:23118208   PMID:23238564   PMID:23926325   PMID:24204274   PMID:24434373   PMID:24478092   PMID:24491912   PMID:25226443  
PMID:25870292   PMID:26079881   PMID:26106150   PMID:26447454   PMID:27480124   PMID:29275858   PMID:31201093   PMID:31358982   PMID:32424104   PMID:36948194  


Genomics

Comparative Map Data
Cd209b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3983,967,655 - 3,976,841 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl83,967,655 - 3,976,844 (-)EnsemblGRCm39 Ensembl
GRCm3883,917,655 - 3,926,841 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl83,917,655 - 3,926,844 (-)EnsemblGRCm38mm10GRCm38
MGSCv3783,917,657 - 3,926,814 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3683,917,657 - 3,926,814 (-)NCBIMGSCv36mm8
Celera83,005,643 - 3,014,800 (-)NCBICelera
Cytogenetic Map8A1.1NCBI
cM Map81.92NCBI
CLEC4M
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38197,763,243 - 7,769,605 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl197,763,210 - 7,769,605 (+)EnsemblGRCh38hg38GRCh38
GRCh37197,828,129 - 7,834,491 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36197,734,081 - 7,740,491 (+)NCBINCBI36Build 36hg18NCBI36
Celera197,699,445 - 7,705,764 (+)NCBICelera
Cytogenetic Map19p13.2NCBI
HuRef197,498,098 - 7,504,416 (+)NCBIHuRef
CHM1_1197,827,770 - 7,834,226 (+)NCBICHM1_1
T2T-CHM13v2.0197,764,262 - 7,770,624 (+)NCBIT2T-CHM13v2.0
Clec4m
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8126,713,795 - 6,722,414 (-)NCBIGRCr8
mRatBN7.2121,915,902 - 1,924,529 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl121,915,919 - 1,924,539 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx122,594,215 - 2,602,852 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0123,217,785 - 3,226,422 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0121,980,552 - 1,989,192 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0122,817,633 - 2,826,303 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl122,816,065 - 2,826,378 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0124,967,129 - 4,975,729 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4122,256,452 - 2,265,053 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera123,768,182 - 3,776,781 (-)NCBICelera
Cytogenetic Map12p12NCBI
LOC100978434
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22012,444,554 - 12,450,929 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11911,561,684 - 11,568,043 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0197,062,961 - 7,069,381 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1197,916,430 - 7,922,634 (+)NCBIpanpan1.1PanPan1.1panPan2

Variants

.
Variants in Cd209b
576 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:774
Count of miRNA genes:344
Interacting mature miRNAs:379
Transcripts:ENSMUST00000084086, ENSMUST00000111014, ENSMUST00000171635
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11533914Mts5_mmammary tumor susceptibility 5 (mouse)8130447432Mouse
13432571Scvg1_msubcutaneous vessel growth QTL 1 (mouse)8124751082Mouse
4140978Nilac5_mnicotine induced locomotor activity 5 (mouse)Not determined8131773288Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001037800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001287211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_026972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_104430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006508870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC121948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF373409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF374471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF422108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF424790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF424791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF424792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF424793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF424794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF424795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF424796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF424797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF424798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF424799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF424800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF424801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF424802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF424803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK007656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK138999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS033264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000084086   ⟹   ENSMUSP00000081104
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl83,967,657 - 3,976,833 (-)Ensembl
GRCm38.p6 Ensembl83,917,657 - 3,926,833 (-)Ensembl
Ensembl Acc Id: ENSMUST00000111014   ⟹   ENSMUSP00000106643
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl83,967,655 - 3,976,844 (-)Ensembl
GRCm38.p6 Ensembl83,917,655 - 3,926,844 (-)Ensembl
Ensembl Acc Id: ENSMUST00000171635   ⟹   ENSMUSP00000126070
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl83,968,606 - 3,976,833 (-)Ensembl
GRCm38.p6 Ensembl83,918,606 - 3,926,833 (-)Ensembl
Ensembl Acc Id: ENSMUST00000188386   ⟹   ENSMUSP00000140695
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl83,968,677 - 3,976,813 (-)Ensembl
GRCm38.p6 Ensembl83,918,677 - 3,926,813 (-)Ensembl
RefSeq Acc Id: NM_001037800   ⟹   NP_001032889
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3983,967,655 - 3,976,841 (-)NCBI
GRCm3883,917,655 - 3,926,841 (-)NCBI
MGSCv3783,917,657 - 3,926,814 (-)RGD
Celera83,005,641 - 3,014,827 (-)NCBI
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001287211   ⟹   NP_001274140
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3983,967,655 - 3,976,841 (-)NCBI
GRCm3883,917,655 - 3,926,841 (-)NCBI
Celera83,005,641 - 3,014,827 (-)NCBI
Sequence:
RefSeq Acc Id: NM_026972   ⟹   NP_081248
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3983,967,655 - 3,976,841 (-)NCBI
GRCm3883,917,655 - 3,926,841 (-)NCBI
MGSCv3783,917,657 - 3,926,814 (-)RGD
Celera83,005,641 - 3,014,827 (-)NCBI
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_104430
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3983,967,655 - 3,976,841 (-)NCBI
GRCm3883,917,655 - 3,926,841 (-)NCBI
Celera83,005,641 - 3,014,827 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006508870   ⟹   XP_006508933
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3983,968,706 - 3,976,838 (-)NCBI
GRCm3883,918,714 - 3,926,838 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001032889 (Get FASTA)   NCBI Sequence Viewer  
  NP_001274140 (Get FASTA)   NCBI Sequence Viewer  
  NP_081248 (Get FASTA)   NCBI Sequence Viewer  
  XP_006508933 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAL13235 (Get FASTA)   NCBI Sequence Viewer  
  AAL27540 (Get FASTA)   NCBI Sequence Viewer  
  AAN31450 (Get FASTA)   NCBI Sequence Viewer  
  AAN75585 (Get FASTA)   NCBI Sequence Viewer  
  AAN75586 (Get FASTA)   NCBI Sequence Viewer  
  AAN75587 (Get FASTA)   NCBI Sequence Viewer  
  AAN75588 (Get FASTA)   NCBI Sequence Viewer  
  AAN75589 (Get FASTA)   NCBI Sequence Viewer  
  AAN75590 (Get FASTA)   NCBI Sequence Viewer  
  AAN75591 (Get FASTA)   NCBI Sequence Viewer  
  AAN75592 (Get FASTA)   NCBI Sequence Viewer  
  AAN75593 (Get FASTA)   NCBI Sequence Viewer  
  AAN75594 (Get FASTA)   NCBI Sequence Viewer  
  AAN75595 (Get FASTA)   NCBI Sequence Viewer  
  AAN75596 (Get FASTA)   NCBI Sequence Viewer  
  AAN75597 (Get FASTA)   NCBI Sequence Viewer  
  AAN75598 (Get FASTA)   NCBI Sequence Viewer  
  BAB25166 (Get FASTA)   NCBI Sequence Viewer  
  BAE23855 (Get FASTA)   NCBI Sequence Viewer  
  EDL01253 (Get FASTA)   NCBI Sequence Viewer  
  EDL01254 (Get FASTA)   NCBI Sequence Viewer  
  EDL01255 (Get FASTA)   NCBI Sequence Viewer  
  EDL01256 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000081104
  ENSMUSP00000081104.3
  ENSMUSP00000106643.3
  ENSMUSP00000126070
  ENSMUSP00000126070.2
  ENSMUSP00000140695
  ENSMUSP00000140695.2
GenBank Protein Q8CJ91 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_081248   ⟸   NM_026972
- Peptide Label: isoform a
- UniProtKB: Q91ZX0 (UniProtKB/Swiss-Prot),   Q91ZW4 (UniProtKB/Swiss-Prot),   Q8CJ94 (UniProtKB/Swiss-Prot),   Q8CJ93 (UniProtKB/Swiss-Prot),   Q8CJ92 (UniProtKB/Swiss-Prot),   Q8CJ90 (UniProtKB/Swiss-Prot),   Q8CJ89 (UniProtKB/Swiss-Prot),   Q8CJ88 (UniProtKB/Swiss-Prot),   Q8CJ87 (UniProtKB/Swiss-Prot),   Q8CJ86 (UniProtKB/Swiss-Prot),   Q8BHK7 (UniProtKB/Swiss-Prot),   Q8BGZ0 (UniProtKB/Swiss-Prot),   Q9D8V4 (UniProtKB/Swiss-Prot),   Q8CJ91 (UniProtKB/Swiss-Prot),   Q3UTX5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001032889   ⟸   NM_001037800
- Peptide Label: isoform b
- UniProtKB: Q8CJ91 (UniProtKB/Swiss-Prot),   Q3UTX5 (UniProtKB/TrEMBL),   Q8CJ85 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001274140   ⟸   NM_001287211
- Peptide Label: isoform c
- UniProtKB: Q8CJ91 (UniProtKB/Swiss-Prot),   Q3UTX5 (UniProtKB/TrEMBL),   Q8CJ85 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006508933   ⟸   XM_006508870
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSMUSP00000106643   ⟸   ENSMUST00000111014
Ensembl Acc Id: ENSMUSP00000126070   ⟸   ENSMUST00000171635
Ensembl Acc Id: ENSMUSP00000140695   ⟸   ENSMUST00000188386
Ensembl Acc Id: ENSMUSP00000081104   ⟸   ENSMUST00000084086
Protein Domains
C-type lectin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8CJ91-F1-model_v2 AlphaFold Q8CJ91 1-325 view protein structure

Promoters
RGD ID:8666361
Promoter ID:EPDNEW_M11212
Type:multiple initiation site
Name:Cd209b_1
Description:Mus musculus CD209b antigen , transcript variant 3, non-codingRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3883,926,814 - 3,926,874EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1916415 AgrOrtholog
Ensembl Genes ENSMUSG00000065987 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000084086 ENTREZGENE
  ENSMUST00000084086.9 UniProtKB/Swiss-Prot
  ENSMUST00000111014 ENTREZGENE
  ENSMUST00000111014.8 UniProtKB/TrEMBL
  ENSMUST00000171635 ENTREZGENE
  ENSMUST00000171635.8 UniProtKB/Swiss-Prot
  ENSMUST00000188386 ENTREZGENE
  ENSMUST00000188386.2 UniProtKB/Swiss-Prot
Gene3D-CATH 3.10.100.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro C-type_lectin-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  C-type_lectin-like/link_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  C-type_lectin_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CD209-like_CTLD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CTDL_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DC-SIGN_domain-containing UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:69165 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1916415 ENTREZGENE
NCBI Gene 69165 ENTREZGENE
PANTHER C-TYPE LECTIN SUPERFAMILY MEMBER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CD209 ANTIGEN-LIKE PROTEIN B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Lectin_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cd209b PhenoGen
PROSITE C_TYPE_LECTIN_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  C_TYPE_LECTIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART CLECT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF56436 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt C209B_MOUSE UniProtKB/Swiss-Prot
  Q3UTX5 ENTREZGENE, UniProtKB/TrEMBL
  Q8BGZ0 ENTREZGENE
  Q8BHK7 ENTREZGENE
  Q8CJ85 ENTREZGENE, UniProtKB/TrEMBL
  Q8CJ86 ENTREZGENE
  Q8CJ87 ENTREZGENE
  Q8CJ88 ENTREZGENE
  Q8CJ89 ENTREZGENE
  Q8CJ90 ENTREZGENE
  Q8CJ91 ENTREZGENE
  Q8CJ92 ENTREZGENE
  Q8CJ93 ENTREZGENE
  Q8CJ94 ENTREZGENE
  Q91ZW4 ENTREZGENE
  Q91ZX0 ENTREZGENE
  Q9D8V4 ENTREZGENE
UniProt Secondary Q8BGZ0 UniProtKB/Swiss-Prot
  Q8BHK7 UniProtKB/Swiss-Prot
  Q8CJ86 UniProtKB/Swiss-Prot
  Q8CJ87 UniProtKB/Swiss-Prot
  Q8CJ88 UniProtKB/Swiss-Prot
  Q8CJ89 UniProtKB/Swiss-Prot
  Q8CJ90 UniProtKB/Swiss-Prot
  Q8CJ92 UniProtKB/Swiss-Prot
  Q8CJ93 UniProtKB/Swiss-Prot
  Q8CJ94 UniProtKB/Swiss-Prot
  Q91ZW4 UniProtKB/Swiss-Prot
  Q91ZX0 UniProtKB/Swiss-Prot
  Q9D8V4 UniProtKB/Swiss-Prot