Hoxa13 (homeobox A13) - Rat Genome Database

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Gene: Hoxa13 (homeobox A13) Mus musculus
Analyze
Symbol: Hoxa13
Name: homeobox A13
RGD ID: 1557892
MGI Page MGI
Description: Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in positive regulation of transcription by RNA polymerase II. Acts upstream of or within several processes, including circulatory system development; endothelial cell differentiation; and reproductive structure development. Located in nucleus. Is expressed in several structures, including central nervous system; genitourinary system; intestine; limb; and limb bud. Used to study hand-foot-genital syndrome. Human ortholog(s) of this gene implicated in Guttmacher syndrome and hand-foot-genital syndrome. Orthologous to human HOXA13 (homeobox A13).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Hd; homeo box A13; homeobox protein Hox-1.10; homeobox protein Hox-A13; Hox-1.1; Hox-1.10; hypodactyly; MGC124020; MGC124021; MGC124022
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39652,235,833 - 52,237,865 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl652,234,674 - 52,237,788 (-)EnsemblGRCm39 Ensembl
GRCm38652,258,853 - 52,260,880 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl652,257,694 - 52,260,880 (-)EnsemblGRCm38mm10GRCm38
MGSCv37652,208,852 - 52,210,874 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36652,188,436 - 52,190,458 (-)NCBIMGSCv36mm8
Celera652,780,486 - 52,782,142 (-)NCBICelera
Cytogenetic Map6B3NCBI
cM Map625.41NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal ampullary gland morphology  (IAGP)
abnormal autopod morphology  (IAGP)
abnormal branching involved in seminal vesicle morphogenesis  (IAGP)
abnormal carpal bone morphology  (IAGP)
abnormal digit development  (IAGP)
abnormal digit morphology  (IAGP)
abnormal embryonic autopod plate morphology  (IAGP)
abnormal female urethra morphology  (IAGP)
abnormal fibula morphology  (IAGP)
abnormal hallux morphology  (IAGP)
abnormal limb bone morphology  (IAGP)
abnormal limb development  (IAGP)
abnormal limb morphology  (IAGP)
abnormal metacarpal bone morphology  (IAGP)
abnormal metatarsal bone morphology  (IAGP)
abnormal penile bone morphology  (IAGP)
abnormal phalanx morphology  (IAGP)
abnormal placental labyrinth vasculature morphology  (IAGP)
abnormal prostate gland anterior lobe morphology  (IAGP)
abnormal rectum morphology  (IAGP)
abnormal renal/urinary system morphology  (IAGP)
abnormal seminal vesicle morphology  (IAGP)
abnormal tarsal bone morphology  (IAGP)
abnormal umbilical artery morphology  (IAGP)
abnormal urinary system development  (IAGP)
abnormal uterine cervix morphology  (IAGP)
absent hallux  (IAGP)
absent urinary bladder  (IAGP)
brachydactyly  (IAGP)
brachyphalangia  (IAGP)
brachypodia  (IAGP)
clinodactyly  (IAGP)
decreased autopod size  (IAGP)
decreased body size  (IEA)
decreased embryo size  (IAGP)
decreased prostate gland duct number  (IAGP)
dilated uterine horn  (IAGP)
ectrodactyly  (IAGP)
edema  (IAGP)
elongated metatarsal bones  (IAGP)
embryonic lethality during organogenesis, incomplete penetrance  (IAGP)
female infertility  (IAGP)
fused carpal bones  (IAGP)
fused phalanges  (IAGP)
fused tarsal bones  (IAGP)
hindlimb oligodactyly  (IAGP)
hydronephrosis  (IAGP)
hypospadia  (IAGP)
infertility  (IAGP)
interdigital webbing  (IAGP)
intestinal obstruction  (IAGP)
iris stroma hypoplasia  (IAGP)
kidney cyst  (IAGP)
lethality throughout fetal growth and development, complete penetrance  (IAGP)
lethality throughout fetal growth and development, incomplete penetrance  (IAGP)
male infertility  (IAGP)
monodactyly  (IAGP)
oligodactyly  (IAGP)
placental labyrinth hypoplasia  (IAGP)
polydactyly  (IAGP)
postnatal growth retardation  (IEA)
prenatal lethality, complete penetrance  (IAGP)
renal hypoplasia  (IAGP)
short limbs  (IAGP)
short perineum  (IAGP)
short radius  (IAGP)
short ulna  (IAGP)
small penile bone  (IAGP)
small prostate gland dorsolateral lobe  (IAGP)
small prostate gland ventral lobe  (IAGP)
small seminal vesicle  (IAGP)
small vagina  (IAGP)
syndactyly  (IAGP)
thick epidermis  (IAGP)
thin ventricular wall  (IAGP)
umbilical artery stenosis  (IAGP)
urinary bladder cyst  (IAGP)
urinary bladder hypoplasia  (IAGP)
uterine cervix hypoplasia  (IAGP)
vesicovaginal fistula  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Essential roles of retinoic acid signaling in interdigital apoptosis and control of BMP-7 expression in mouse autopods. Dupe V, etal., Dev Biol 1999 Apr 1;208(1):30-43.
2. Sonic hedgehog, BMP4, and Hox genes in the development of anorectal malformations in Ethylenethiourea-exposed fetal rats. Mandhan P, etal., J Pediatr Surg. 2006 Dec;41(12):2041-5.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. MGD IEA MGD IEA
5. Mutation of HOXA13 in hand-foot-genital syndrome. Mortlock DP and Innis JW, Nat Genet. 1997 Feb;15(2):179-80.
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Maternal exposure to di-n-butyl phthalate (DBP) induces combined anorectal and urogenital malformations in male rat offspring. Zhu YP, etal., Reprod Toxicol. 2016 Jun;61:169-76. doi: 10.1016/j.reprotox.2016.04.007. Epub 2016 Apr 11.
Additional References at PubMed
PMID:109570   PMID:1184950   PMID:1270792   PMID:1358459   PMID:2887485   PMID:2898504   PMID:2995250   PMID:5519671   PMID:7152259   PMID:7579515   PMID:7862151   PMID:8099045  
PMID:8673126   PMID:8792605   PMID:8833244   PMID:8867729   PMID:8898214   PMID:8903719   PMID:9342041   PMID:9363887   PMID:9391088   PMID:9408238   PMID:9415493   PMID:9428414  
PMID:9834182   PMID:10021340   PMID:10210434   PMID:10470645   PMID:10534616   PMID:10569982   PMID:10625554   PMID:10656931   PMID:10835630   PMID:11101846   PMID:11543619   PMID:11684655  
PMID:11688568   PMID:11850178   PMID:12215652   PMID:12466851   PMID:12477932   PMID:12701101   PMID:12771139   PMID:12783783   PMID:14614146   PMID:14706073   PMID:15030763   PMID:15342482  
PMID:15385446   PMID:15509224   PMID:15617687   PMID:15618518   PMID:15680324   PMID:15733672   PMID:15944189   PMID:15973411   PMID:16087734   PMID:16120640   PMID:16311594   PMID:16314414  
PMID:16630606   PMID:16672333   PMID:16806154   PMID:16971476   PMID:17126317   PMID:17200107   PMID:17222543   PMID:17304517   PMID:17714700   PMID:18245445   PMID:18265010   PMID:18287559  
PMID:18359901   PMID:18483557   PMID:18638319   PMID:18729207   PMID:19168674   PMID:19204410   PMID:19210962   PMID:19247936   PMID:19390486   PMID:19546318   PMID:19853565   PMID:19888690  
PMID:19906863   PMID:20034107   PMID:20043900   PMID:20386744   PMID:20404326   PMID:20458143   PMID:20932939   PMID:21145498   PMID:21256124   PMID:21267068   PMID:21750036   PMID:21752936  
PMID:21765002   PMID:21795281   PMID:21809434   PMID:21829694   PMID:21873635   PMID:21968101   PMID:22174793   PMID:22219351   PMID:22465667   PMID:22525429   PMID:22701719   PMID:22988430  
PMID:23034633   PMID:23038774   PMID:23239739   PMID:23358455   PMID:23499659   PMID:23553814   PMID:23633510   PMID:23913823   PMID:24005908   PMID:24075990   PMID:24238961   PMID:24465181  
PMID:24930703   PMID:25099890   PMID:25255084   PMID:25848055   PMID:25980463   PMID:26062940   PMID:26238020   PMID:26283362   PMID:26598695   PMID:26633036   PMID:26674308   PMID:26959361  
PMID:27019111   PMID:27198226   PMID:27341756   PMID:27706137   PMID:27821748   PMID:27974206   PMID:28041967   PMID:28188179   PMID:28335721   PMID:28369467   PMID:28384324   PMID:30190278  
PMID:30475793   PMID:30649340   PMID:30959515   PMID:31204170   PMID:31220272   PMID:31838787   PMID:31896583   PMID:32427842   PMID:32450229   PMID:32479258   PMID:32537491   PMID:32665241  
PMID:33257809   PMID:33297480   PMID:33497014   PMID:34099670   PMID:34108202   PMID:34155146   PMID:34423345   PMID:35715427   PMID:35977544   PMID:36473461   PMID:36994104  


Genomics

Comparative Map Data
Hoxa13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39652,235,833 - 52,237,865 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl652,234,674 - 52,237,788 (-)EnsemblGRCm39 Ensembl
GRCm38652,258,853 - 52,260,880 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl652,257,694 - 52,260,880 (-)EnsemblGRCm38mm10GRCm38
MGSCv37652,208,852 - 52,210,874 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36652,188,436 - 52,190,458 (-)NCBIMGSCv36mm8
Celera652,780,486 - 52,782,142 (-)NCBICelera
Cytogenetic Map6B3NCBI
cM Map625.41NCBI
HOXA13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38727,194,364 - 27,200,091 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl727,193,503 - 27,200,091 (-)EnsemblGRCh38hg38GRCh38
GRCh37727,233,983 - 27,239,710 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36727,203,024 - 27,206,250 (-)NCBINCBI36Build 36hg18NCBI36
Build 34727,009,738 - 27,012,936NCBI
Celera727,225,437 - 27,228,662 (-)NCBICelera
Cytogenetic Map7p15.2NCBI
HuRef727,117,064 - 27,119,882 (-)NCBIHuRef
CHM1_1727,236,223 - 27,239,448 (-)NCBICHM1_1
T2T-CHM13v2.0727,330,371 - 27,336,079 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2727,287,684 - 27,290,909 (-)NCBI
Hoxa13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8482,689,566 - 82,691,701 (-)NCBIGRCr8
mRatBN7.2481,358,956 - 81,361,091 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl481,358,956 - 81,361,091 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx486,580,795 - 86,582,928 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0482,356,180 - 82,358,313 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0480,783,284 - 80,785,419 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0482,313,383 - 82,315,550 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl482,228,017 - 82,229,397 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04146,980,144 - 146,982,279 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4480,558,841 - 80,561,053NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera476,249,534 - 76,251,232 (-)NCBICelera
Cytogenetic Map4q24NCBI
Hoxa13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541028,890,171 - 28,893,515 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541028,887,952 - 28,893,515 (-)NCBIChiLan1.0ChiLan1.0
HOXA13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2632,026,168 - 32,029,267 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1780,346,803 - 80,353,992 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0727,838,656 - 27,844,562 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1727,441,171 - 27,443,793 (-)NCBIpanpan1.1PanPan1.1panPan2
HOXA13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11440,371,234 - 40,375,261 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1440,373,059 - 40,375,980 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1439,801,720 - 39,806,138 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01440,309,583 - 40,314,003 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1440,311,665 - 40,314,704 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11440,423,492 - 40,427,909 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01440,108,556 - 40,112,977 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01440,467,202 - 40,471,624 (-)NCBIUU_Cfam_GSD_1.0
Hoxa13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511884,612,984 - 84,615,546 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364783,824,715 - 3,827,277 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364783,824,715 - 3,827,277 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HOXA13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1845,373,440 - 45,376,325 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11845,373,340 - 45,379,046 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21850,007,054 - 50,008,334 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HOXA13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12131,168,239 - 31,175,960 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2131,168,793 - 31,173,056 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604273,559,316 - 73,565,124 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hoxa13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247393,406,436 - 3,410,851 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247393,405,860 - 3,410,426 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Hoxa13
66 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1226
Count of miRNA genes:466
Interacting mature miRNAs:549
Transcripts:ENSMUST00000047993, ENSMUST00000114416, ENSMUST00000147595, ENSMUST00000172961, ENSMUST00000173368, ENSMUST00000174763
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396633110Mouse
1301266Lmr4_mleishmaniasis resistance 4 (mouse)Not determined64209335876093500Mouse
12910785Pwgrq16_mpost-weaning growth rate QTL 16 (mouse)64380374777788506Mouse
11252142Mom12_mModifier of Min 12 (mouse)63387226167872400Mouse
14696807Rbcn2_mrod bipolar cell number 2 (mouse)65118698056186985Mouse
4140983Srilp_msleep response to influenza, light phase (mouse)Not determined4870349075424693Mouse
12910798Pwgrq5_mpre-weaning growth rate QTL 5 (mouse)64380374777788506Mouse
1300767Aliq4_macute lung injury QTL 4 (mouse)Not determined63627333270273435Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46912919136400690Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648696934125336963Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396633110Mouse
14746995Manh60_mmandible shape 60 (mouse)63720266271202662Mouse
12910807Pwbwq11_mpost-weaning body weight QTL 11 (mouse)64380374777788506Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648696934148351498Mouse
1301254Skts11_mskin tumor susceptibility 11 (mouse)Not determined65115613485156284Mouse
1357442Dbts1_mdiabetes 1 (mouse)Not determined61823414773364675Mouse
12910802Pwbwq12_mpost-weaning body weight QTL 12 (mouse)64380374777788506Mouse
4141094Hrtr1_mheart rate 1 (mouse)Not determined3674146370741463Mouse
1300618Pgia19_mproteoglycan induced arthritis 19 (mouse)Not determined64529099387403016Mouse
4141988Obrq3_mobesity resistance QTL 3 (mouse)Not determined2829099362291115Mouse
12910809Pwbwq10_mpost-weaning body weight QTL 10 (mouse)64380374777788506Mouse
12910820Ogrq3_moverall growth rate QTL 3 (mouse)64380374777788506Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396633110Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396633110Mouse
12904940Edlmmq5_mextensor digitorum longus muscle mass QTL 5 (mouse)61961634653616346Mouse
12904943Tammq4_mtibialis anterior muscle mass QTL 4 (mouse)61961634653616346Mouse
10412213Sxbq2_mSGC/Knj cross B6 QTL 2 (mouse)Not determined61991268571299759Mouse
4141454Obrq4_mobesity resistance QTL 4 (mouse)Not determined3170349965703611Mouse
12904952Gmmq4_mgastrocnemius muscle mass QTL 4 (mouse)61961634653616346Mouse
13208564Bmiq7_mbody mass index QTL 7 (mouse)62499999979976983Mouse
26884441Sklq3_mskull length QTL 3, 5 week (mouse)6760000080576983Mouse
1300959Lxw2_mlupus BXSB x NZW 2 (mouse)Not determined63387226167872400Mouse
10412107Desp4_mdespair 4 (mouse)Not determined62004983054049830Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648703490125333748Mouse
1301326Trbv4c2_mT cell receptor beta variable 4 (mouse)Not determined64086823071356155Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487403016Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63864656092584431Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645290993128811995Mouse
25440480Moaq2_mmodifier of alien QTL 2 (mouse)63050001117476961Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652138693116132228Mouse
4141782Mrdq5_mmodifier of retinal degeneration QTL 5 (mouse)Not determined3282758578215957Mouse
12880424V25Dq4_mvitamin D inactive form serum level QTL 4 (mouse)64157698575576985Mouse
12880425V25Dq5_mvitamin D inactive form serum level QTL 5 (mouse)63267698066676980Mouse
11040600Lmr4c_mleishmaniasis resistance 4c (mouse)64209335876093500Mouse
11040601Lmr4a_mleishmaniasis resistance 4a (mouse)64209335876093500Mouse
14700690Ccs6_mcolon cancer susceptibility 6 (mouse)62377693457776934Mouse
11533915Mts4_mmammary tumor susceptibility 4 (mouse)64209335876093500Mouse
10043885Cia6c_mcollagen induced arthritis QTL 6c (mouse)Not determined64444280571096451Mouse
1357539Bsbob3_mBSB obesity 3 (mouse)Not determined63644845670448576Mouse
27226726Tibmd7_mtibia midshaft diameter 7, 16 week (mouse)61769999953476985Mouse

Markers in Region
Hoxa13  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv37652,209,011 - 52,209,213UniSTSGRCm37
MGSCv37652,209,125 - 52,210,202UniSTSGRCm37
MGSCv37652,209,090 - 52,210,263UniSTSGRCm37
MGSCv37652,209,913 - 52,210,113UniSTSGRCm37
Celera652,781,547 - 52,781,747UniSTS
Celera652,780,645 - 52,780,847UniSTS
Celera652,780,724 - 52,781,897UniSTS
Celera652,780,759 - 52,781,836UniSTS
Cytogenetic Map6B3UniSTS
cM Map626.33UniSTS
cM Map626.33UniSTS
RH66791  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38652,258,956 - 52,259,102UniSTSGRCm38
MGSCv37652,208,955 - 52,209,101UniSTSGRCm37
Celera652,780,589 - 52,780,735UniSTS
Cytogenetic Map6B3UniSTS
cM Map626.33UniSTS
Hoxa13  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38652,259,126 - 52,260,203UniSTSGRCm38
MGSCv37652,209,125 - 52,210,202UniSTSGRCm37
Celera652,780,759 - 52,781,836UniSTS
Cytogenetic Map6B3UniSTS
Hoxa13  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38652,259,012 - 52,259,214UniSTSGRCm38
MGSCv37652,209,011 - 52,209,213UniSTSGRCm37
Celera652,780,645 - 52,780,847UniSTS
Cytogenetic Map6B3UniSTS
cM Map626.33UniSTS
Hoxa13  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6B3UniSTS
Hoxa13  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38652,259,914 - 52,260,114UniSTSGRCm38
MGSCv37652,209,913 - 52,210,113UniSTSGRCm37
Celera652,781,547 - 52,781,747UniSTS
Cytogenetic Map6B3UniSTS
Hoxa13  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38652,259,091 - 52,260,264UniSTSGRCm38
MGSCv37652,209,090 - 52,210,263UniSTSGRCm37
Celera652,780,724 - 52,781,897UniSTS
Cytogenetic Map6B3UniSTS
Hoxa13  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6B3UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000047993   ⟹   ENSMUSP00000039170
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl652,258,853 - 52,260,880 (-)Ensembl
Ensembl Acc Id: ENSMUST00000114416   ⟹   ENSMUSP00000110059
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl652,258,871 - 52,260,802 (-)Ensembl
Ensembl Acc Id: ENSMUST00000147595   ⟹   ENSMUSP00000125221
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl652,234,674 - 52,237,788 (-)Ensembl
GRCm38.p6 Ensembl652,257,694 - 52,260,803 (-)Ensembl
Ensembl Acc Id: ENSMUST00000172961
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl652,235,851 - 52,237,787 (-)Ensembl
GRCm38.p6 Ensembl652,258,871 - 52,260,802 (-)Ensembl
Ensembl Acc Id: ENSMUST00000173368
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl652,235,851 - 52,237,787 (-)Ensembl
GRCm38.p6 Ensembl652,258,871 - 52,260,802 (-)Ensembl
Ensembl Acc Id: ENSMUST00000174763
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl652,235,851 - 52,237,787 (-)Ensembl
GRCm38.p6 Ensembl652,258,871 - 52,260,802 (-)Ensembl
RefSeq Acc Id: NM_008264   ⟹   NP_032290
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39652,235,833 - 52,237,865 (-)NCBI
GRCm38652,258,853 - 52,260,880 (-)ENTREZGENE
MGSCv37652,208,852 - 52,210,874 (-)RGD
Celera652,780,486 - 52,782,140 (-)ENTREZGENE
cM Map6 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_032290 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB03322 (Get FASTA)   NCBI Sequence Viewer  
  AAI00732 (Get FASTA)   NCBI Sequence Viewer  
  AAI00733 (Get FASTA)   NCBI Sequence Viewer  
  AAI00734 (Get FASTA)   NCBI Sequence Viewer  
  EDK98675 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000125221
  ENSMUSP00000125221.7
GenBank Protein Q62424 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_032290   ⟸   NM_008264
- UniProtKB: Q62424 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000125221   ⟸   ENSMUST00000147595
Ensembl Acc Id: ENSMUSP00000039170   ⟸   ENSMUST00000047993
Ensembl Acc Id: ENSMUSP00000110059   ⟸   ENSMUST00000114416
Protein Domains
Homeobox

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q62424-F1-model_v2 AlphaFold Q62424 1-386 view protein structure

Promoters
RGD ID:6839474
Promoter ID:MM_KWN:46028
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Lung
Transcripts:ENSMUST00000047993,   ENSMUST00000114416,   NM_008264,   NM_008264_HOXA13,   OTTMUST00000065076,   UC009BYS.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36652,209,101 - 52,210,002 (-)MPROMDB
RGD ID:6889748
Promoter ID:EPDNEW_M8325
Type:initiation region
Name:Hoxa13_1
Description:Mus musculus homeobox A13 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38652,260,788 - 52,260,848EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:96173 AgrOrtholog
Ensembl Genes ENSMUSG00000038203 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000147595 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000147595.7 UniProtKB/Swiss-Prot
Gene3D-CATH Homeodomain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro AP_axis_regulatory_Homeobox UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HoxA13_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:15398 UniProtKB/Swiss-Prot
MGD MGI:96173 ENTREZGENE
NCBI Gene 15398 ENTREZGENE
PANTHER HOMEOBOX PROTEIN HOX-A13 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SEGMENTATION PROTEIN FUSHI TARAZU-LIKE PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Homeodomain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HoxA13_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Hoxa13 PhenoGen
PROSITE HOMEOBOX_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART HOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt E0CXK7_MOUSE UniProtKB/TrEMBL
  HXA13_MOUSE UniProtKB/Swiss-Prot
  Q496R8_MOUSE UniProtKB/TrEMBL
  Q496R9_MOUSE UniProtKB/TrEMBL
  Q496S0_MOUSE UniProtKB/TrEMBL
  Q62424 ENTREZGENE