Myof (myoferlin) - Rat Genome Database

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Gene: Myof (myoferlin) Mus musculus
Analyze
Symbol: Myof
Name: myoferlin
RGD ID: 1557416
MGI Page MGI
Description: Enables phospholipid binding activity. Involved in plasma membrane repair and regulation of vascular endothelial growth factor receptor signaling pathway. Acts upstream of or within T-tubule organization; cellular response to heat; and glycerol metabolic process. Located in caveola. Is expressed in genitourinary system; lens; neural tube; and thyroid gland. Human ortholog(s) of this gene implicated in hereditary angioedema. Orthologous to human MYOF (myoferlin).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: 2310004N10Rik; 2310051D19Rik; E030042N20Rik; fer-1-like 3, myoferlin; fer-1-like protein 3; Fer1; Fer1l3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391937,887,484 - 38,032,025 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1937,887,484 - 38,032,025 (-)EnsemblGRCm39 Ensembl
GRCm381937,899,036 - 38,043,577 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1937,899,036 - 38,043,577 (-)EnsemblGRCm38mm10GRCm38
MGSCv371937,973,526 - 38,118,067 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361937,964,178 - 38,108,721 (-)NCBIMGSCv36mm8
Celera1938,691,105 - 38,833,619 (-)NCBICelera
Cytogenetic Map19C2NCBI
cM Map1932.53NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(S)-nicotine  (ISO)
1,1-dichloroethene  (EXP)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (EXP,ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-methylcholanthrene  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxyphenyl retinamide  (EXP)
5-fluorouracil  (ISO)
8-Br-cAMP  (ISO)
acetamide  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (EXP,ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-naphthoflavone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (EXP,ISO)
bucladesine  (ISO)
butan-1-ol  (ISO)
butanal  (ISO)
C60 fullerene  (ISO)
caffeine  (ISO)
cantharidin  (EXP)
carbamazepine  (ISO)
chlordecone  (EXP)
chloropicrin  (ISO)
choline  (EXP)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
cytarabine  (ISO)
daidzein  (ISO)
daidzein 7-O-beta-D-glucoside  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP,ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
entinostat  (ISO)
fenamidone  (EXP)
folic acid  (EXP)
formaldehyde  (ISO)
FR900359  (ISO)
furan  (ISO)
genistein  (ISO)
genistein 7-O-beta-D-glucoside  (ISO)
glycitein  (ISO)
glycitin  (ISO)
hydrogen peroxide  (ISO)
indometacin  (ISO)
ivermectin  (ISO)
L-methionine  (EXP)
lipopolysaccharide  (EXP,ISO)
medroxyprogesterone acetate  (ISO)
mercury dibromide  (ISO)
methylmercury chloride  (ISO)
mono(2-ethylhexyl) phthalate  (EXP)
N-nitrosodiethylamine  (ISO)
nickel atom  (ISO)
nickel sulfate  (ISO)
nicotine  (ISO)
ochratoxin A  (ISO)
ozone  (EXP)
p-chloromercuribenzoic acid  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
perfluorohexanesulfonic acid  (EXP)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
progesterone  (ISO)
quercetin  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (EXP)
silver(0)  (EXP)
sirolimus  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (ISO)
sunitinib  (ISO)
tetrachloromethane  (EXP)
thapsigargin  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (ISO)
vitamin E  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11959863   PMID:12466305   PMID:12477932   PMID:14610273   PMID:14691545   PMID:15368895   PMID:15782199   PMID:16141072   PMID:16141073  
PMID:16280346   PMID:16289749   PMID:17702744   PMID:17967808   PMID:18502764   PMID:18755693   PMID:20008164   PMID:20571050   PMID:21267068   PMID:21586340   PMID:21621072   PMID:21873635  
PMID:23499551   PMID:24177035   PMID:24194600   PMID:26792178   PMID:26884322   PMID:27034005   PMID:30333125   PMID:30333137   PMID:30389854   PMID:31623157   PMID:31801973   PMID:31912559  
PMID:32325033   PMID:32554809   PMID:33634965   PMID:33686253   PMID:34354129   PMID:35984564   PMID:37839992   PMID:38355793  


Genomics

Comparative Map Data
Myof
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391937,887,484 - 38,032,025 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1937,887,484 - 38,032,025 (-)EnsemblGRCm39 Ensembl
GRCm381937,899,036 - 38,043,577 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1937,899,036 - 38,043,577 (-)EnsemblGRCm38mm10GRCm38
MGSCv371937,973,526 - 38,118,067 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361937,964,178 - 38,108,721 (-)NCBIMGSCv36mm8
Celera1938,691,105 - 38,833,619 (-)NCBICelera
Cytogenetic Map19C2NCBI
cM Map1932.53NCBI
MYOF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381093,306,429 - 93,482,334 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1093,306,429 - 93,482,334 (-)EnsemblGRCh38hg38GRCh38
GRCh371095,066,186 - 95,242,091 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361095,056,176 - 95,232,029 (-)NCBINCBI36Build 36hg18NCBI36
Build 341095,056,176 - 95,232,029NCBI
Celera1088,807,371 - 88,983,227 (-)NCBICelera
Cytogenetic Map10q23.33NCBI
HuRef1088,693,764 - 88,869,523 (-)NCBIHuRef
CHM1_11095,348,803 - 95,524,701 (-)NCBICHM1_1
T2T-CHM13v2.01094,186,401 - 94,362,329 (-)NCBIT2T-CHM13v2.0
Myof
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81245,086,109 - 245,234,768 (-)NCBIGRCr8
mRatBN7.21235,673,666 - 235,822,413 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1235,673,666 - 235,822,334 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1244,059,224 - 244,243,967 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01250,991,115 - 251,139,512 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01243,829,337 - 243,977,732 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01256,585,410 - 256,734,727 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1256,585,410 - 256,734,730 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01264,066,287 - 264,215,424 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41242,209,178 - 242,372,206 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1232,767,121 - 232,915,826 (-)NCBICelera
Cytogenetic Map1q53NCBI
Myof
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542524,227 - 174,680 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542524,037 - 175,211 (+)NCBIChiLan1.0ChiLan1.0
MYOF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28105,341,845 - 105,517,642 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110105,347,160 - 105,522,698 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01090,050,062 - 90,225,718 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11093,561,190 - 93,735,979 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1093,561,190 - 93,735,979 (-)Ensemblpanpan1.1panPan2
MYOF
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1287,602,778 - 7,745,185 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl287,603,129 - 7,745,063 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha287,779,241 - 7,921,655 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0287,863,180 - 8,005,417 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl287,863,183 - 8,005,405 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1287,583,368 - 7,725,229 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0287,611,709 - 7,754,100 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0287,782,046 - 7,924,310 (-)NCBIUU_Cfam_GSD_1.0
Myof
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721339,856,509 - 40,007,935 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366011,489,327 - 1,640,026 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366011,489,252 - 1,640,536 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MYOF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14104,770,515 - 104,941,109 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114104,770,514 - 104,941,212 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214114,504,901 - 114,671,853 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MYOF
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1986,550,688 - 86,730,213 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl986,551,128 - 86,703,466 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604847,327,051 - 47,499,010 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Myof
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247374,544,593 - 4,689,463 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247374,543,911 - 4,689,195 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Myof
5649 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:296
Count of miRNA genes:139
Interacting mature miRNAs:142
Transcripts:ENSMUST00000041475, ENSMUST00000172095
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13506250Renmq1_mrenal mercury accumulation QTL 1 (mouse)192738559461385705Mouse
10412251Mnp_mmodifier of Niemann Pick type C1 (mouse)Not determined192023431454234461Mouse
1302170Tanidd1_mtally ho associated non-insulin dependednt diabetes mellitus 1 (mouse)Not determined193675259761420004Mouse
11039522Tbbr4_mTrypanosoma brucei brucei response 4 (mouse)19531332639313470Mouse
1301336Alcp23_malcohol preference locus 23 (mouse)Not determined191591260749912719Mouse
1558876W3q14_mweight 3 weeks QTL 14 (mouse)Not determined192231332653911504Mouse
1302019Pgia23_mproteoglycan induced arthritis 23 (mouse)Not determined19978745343787602Mouse
1301633Alcp24_malcohol preference locus 24 (mouse)Not determined191591260749912719Mouse
14928311Manh85_mmandible shape 85 (mouse)191191478945914789Mouse
1301639Stnn_mstriatal neuron number (mouse)Not determined193395195261420004Mouse
1301451Ath16_matherosclerosis 16 (mouse)Not determined192542691759427005Mouse
1300683Fembm7_mfemoral bone morphometry 7 (mouse)Not determined193014122461420004Mouse
4141659Pbwg20_mpostnatal body weight growth 20 (mouse)Not determined192137870555378928Mouse
4141019Tgq29_mtriglyceride QTL 29 (mouse)Not determined3459678661420004Mouse
1301942Pas13_mpulmonary adenoma susceptibility 13 (mouse)Not determined193014123161420004Mouse
10413881Moe2_mmodifier of epilepsy 2 (mouse)191492301648923138Mouse
1302004Lfp2_mlong free running period 2 (mouse)Not determined191829516252295381Mouse
12790634Ebm1_mEpidermolysis Bullosa modifier 1 (mouse)192498843958988439Mouse
1300856Nobq2_mNew Zealand obese QTL 2 (mouse)Not determined193089788061420004Mouse
4141138Femwf11_mfemur work to failure 11 (mouse)Not determined2814034861420004Mouse
4141650Chldq9_mcholesterol and HDL QTL 9 (mouse)Not determined193788298261420004Mouse
13504736Ifvrq6_minfluenza virus resistance QTL 6 (mouse)193690291044913949Mouse
1301410Cd8mts6_mCD8 memory T cell subset 6 (mouse)Not determined193014123161420004Mouse
1301479Sluc1_msusceptibility to lung cancer 1 (mouse)Not determined193601694446761521Mouse
4142343Moen2_mmodifier of engrailed QTL 2 (mouse)Not determined192023431454234461Mouse
1302123Tlsr8_mthymic lymphoma suppressor region 8 (mouse)Not determined192513600242388916Mouse
1302063Eae19_mexperimental allergic encephalomyelitis 19 (mouse)Not determined191829516252295381Mouse
1301741Lith2_mlithogenic gene 2 (mouse)Not determined193299215861420004Mouse
1301228Iba4_minduction of brown adipocytes 4 (mouse)Not determined19930571543305821Mouse

Markers in Region
Myof  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381937,899,433 - 37,899,707UniSTSGRCm38
MGSCv371937,973,923 - 37,974,197UniSTSGRCm37
Celera1938,691,502 - 38,691,776UniSTS
Cytogenetic Map19C2UniSTS
cM Map19 UniSTS
D7S1486  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381937,996,970 - 37,997,336UniSTSGRCm38
MGSCv371938,071,460 - 38,071,826UniSTSGRCm37
Celera1938,789,171 - 38,789,538UniSTS
Cytogenetic Map19C2UniSTS


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001099634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001302140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006526994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006526995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC115360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK009153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK041571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK075903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK086107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK173131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB612787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC025449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC025649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC044825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC051217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC055953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC150790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ551773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY743035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN701681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000041475   ⟹   ENSMUSP00000045036
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1937,887,676 - 38,032,025 (-)Ensembl
GRCm38.p6 Ensembl1937,899,228 - 38,043,577 (-)Ensembl
Ensembl Acc Id: ENSMUST00000172095   ⟹   ENSMUSP00000129792
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1937,887,484 - 38,032,025 (-)Ensembl
GRCm38.p6 Ensembl1937,899,036 - 38,043,577 (-)Ensembl
Ensembl Acc Id: ENSMUST00000223650
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1937,936,174 - 38,031,806 (-)Ensembl
GRCm38.p6 Ensembl1937,947,726 - 38,043,358 (-)Ensembl
Ensembl Acc Id: ENSMUST00000224518
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1937,907,791 - 37,928,429 (-)Ensembl
GRCm38.p6 Ensembl1937,919,343 - 37,939,981 (-)Ensembl
Ensembl Acc Id: ENSMUST00000224560   ⟹   ENSMUSP00000153534
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1937,887,676 - 37,904,198 (-)Ensembl
GRCm38.p6 Ensembl1937,899,228 - 37,915,750 (-)Ensembl
Ensembl Acc Id: ENSMUST00000224580
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1937,904,054 - 37,905,353 (-)Ensembl
GRCm38.p6 Ensembl1937,915,606 - 37,916,905 (-)Ensembl
Ensembl Acc Id: ENSMUST00000224900   ⟹   ENSMUSP00000153590
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1937,888,049 - 37,892,170 (-)Ensembl
GRCm38.p6 Ensembl1937,899,601 - 37,903,722 (-)Ensembl
Ensembl Acc Id: ENSMUST00000225159   ⟹   ENSMUSP00000153201
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1937,887,972 - 37,955,574 (-)Ensembl
GRCm38.p6 Ensembl1937,899,524 - 37,967,126 (-)Ensembl
Ensembl Acc Id: ENSMUST00000225287
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1937,892,145 - 37,894,272 (-)Ensembl
GRCm38.p6 Ensembl1937,903,697 - 37,905,824 (-)Ensembl
Ensembl Acc Id: ENSMUST00000225435
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1937,887,916 - 37,889,951 (-)Ensembl
GRCm38.p6 Ensembl1937,899,468 - 37,901,503 (-)Ensembl
Ensembl Acc Id: ENSMUST00000226068   ⟹   ENSMUSP00000153225
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1937,887,758 - 38,031,799 (-)Ensembl
GRCm38.p6 Ensembl1937,899,310 - 38,043,351 (-)Ensembl
Ensembl Acc Id: ENSMUST00000226084
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1937,967,862 - 38,031,847 (-)Ensembl
GRCm38.p6 Ensembl1937,979,414 - 38,043,399 (-)Ensembl
RefSeq Acc Id: NM_001099634   ⟹   NP_001093104
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391937,887,484 - 38,032,025 (-)NCBI
GRCm381937,899,036 - 38,043,577 (-)ENTREZGENE
MGSCv371937,973,526 - 38,118,067 (-)RGD
Celera1938,691,105 - 38,833,619 (-)RGD
cM Map19 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001302140   ⟹   NP_001289069
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391937,887,484 - 38,032,025 (-)NCBI
GRCm381937,899,036 - 38,043,577 (-)NCBI
Celera1938,691,105 - 38,833,619 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006526994   ⟹   XP_006527057
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391937,887,680 - 38,032,025 (-)NCBI
GRCm381937,899,232 - 38,043,572 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006526995   ⟹   XP_006527058
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391937,887,680 - 38,032,025 (-)NCBI
GRCm381937,899,232 - 38,043,572 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001093104   ⟸   NM_001099634
- Peptide Label: isoform 2
- UniProtKB: Q8R3B4 (UniProtKB/Swiss-Prot),   Q8C0D1 (UniProtKB/Swiss-Prot),   Q8BVY6 (UniProtKB/Swiss-Prot),   Q8BUC1 (UniProtKB/Swiss-Prot),   Q8BU70 (UniProtKB/Swiss-Prot),   Q8BU64 (UniProtKB/Swiss-Prot),   Q80V33 (UniProtKB/Swiss-Prot),   Q7TMG0 (UniProtKB/Swiss-Prot),   Q69ZN7 (UniProtKB/Swiss-Prot),   E9Q390 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006527058   ⟸   XM_006526995
- Peptide Label: isoform X2
- UniProtKB: E9Q390 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006527057   ⟸   XM_006526994
- Peptide Label: isoform X1
- UniProtKB: B9EK95 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001289069   ⟸   NM_001302140
- Peptide Label: isoform 1
- UniProtKB: A0A286YDF5 (UniProtKB/TrEMBL),   B9EK95 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000129792   ⟸   ENSMUST00000172095
Ensembl Acc Id: ENSMUSP00000153201   ⟸   ENSMUST00000225159
Ensembl Acc Id: ENSMUSP00000153590   ⟸   ENSMUST00000224900
Ensembl Acc Id: ENSMUSP00000153534   ⟸   ENSMUST00000224560
Ensembl Acc Id: ENSMUSP00000045036   ⟸   ENSMUST00000041475
Ensembl Acc Id: ENSMUSP00000153225   ⟸   ENSMUST00000226068
Protein Domains
C2   Ferlin C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q69ZN7-F1-model_v2 AlphaFold Q69ZN7 1-2048 view protein structure

Promoters
RGD ID:13679394
Promoter ID:EPDNEW_M23846
Type:initiation region
Name:Myof_1
Description:Mus musculus myoferlin , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M23847  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381938,043,374 - 38,043,434EPDNEW
RGD ID:13679396
Promoter ID:EPDNEW_M23847
Type:initiation region
Name:Myof_2
Description:Mus musculus myoferlin , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M23846  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381938,043,593 - 38,043,653EPDNEW
RGD ID:6830061
Promoter ID:MM_KWN:26974
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000087265,   NM_001099634,   UC008HIV.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361938,117,589 - 38,118,089 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1919192 AgrOrtholog
Ensembl Genes ENSMUSG00000048612 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000041475 ENTREZGENE
  ENSMUST00000041475.16 UniProtKB/Swiss-Prot
  ENSMUST00000172095.3 UniProtKB/TrEMBL
  ENSMUST00000224560.2 UniProtKB/TrEMBL
  ENSMUST00000224900.2 UniProtKB/TrEMBL
  ENSMUST00000225159.2 UniProtKB/TrEMBL
  ENSMUST00000226068 ENTREZGENE
  ENSMUST00000226068.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.150 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro C2_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  C2A_Ferlin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  C2B_Ferlin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  C2C_Ferlin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  C2D_Ferlin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  C2E_Ferlin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  C2F_Ferlin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FerIin_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ferlin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ferlin_A-domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ferlin_B-domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ferlin_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Peroxin/Ferlin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:226101 UniProtKB/Swiss-Prot
MGD MGI:1919192 ENTREZGENE
NCBI Gene Myof ENTREZGENE
PANTHER MISFIRE, ISOFORM F UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12546 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12546:SF55 UniProtKB/TrEMBL
Pfam FerA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FerB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FerI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ferlin_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF00168 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Myof PhenoGen
PROSITE PS50004 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART DysFC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DysFN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FerA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FerB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FerI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00239 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49562 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A286YCZ3_MOUSE UniProtKB/TrEMBL
  A0A286YDF5 ENTREZGENE, UniProtKB/TrEMBL
  A0A286YDV5_MOUSE UniProtKB/TrEMBL
  A0A286YE65_MOUSE UniProtKB/TrEMBL
  B9EK95 ENTREZGENE, UniProtKB/TrEMBL
  E9Q390 ENTREZGENE, UniProtKB/TrEMBL
  MYOF_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q7TMG0 ENTREZGENE
  Q80V33 ENTREZGENE
  Q8BU64 ENTREZGENE
  Q8BU70 ENTREZGENE
  Q8BUC1 ENTREZGENE
  Q8BVY6 ENTREZGENE
  Q8C0D1 ENTREZGENE
  Q8R3B4 ENTREZGENE
UniProt Secondary Q7TMG0 UniProtKB/Swiss-Prot
  Q80V33 UniProtKB/Swiss-Prot
  Q8BU64 UniProtKB/Swiss-Prot
  Q8BU70 UniProtKB/Swiss-Prot
  Q8BUC1 UniProtKB/Swiss-Prot
  Q8BVY6 UniProtKB/Swiss-Prot
  Q8C0D1 UniProtKB/Swiss-Prot
  Q8R3B4 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-08-26 Myof  myoferlin  2310051D19Rik  RIKEN cDNA 2310051D19 gene  Symbol and/or name updated 27372883 PROVISIONAL
2024-08-21 2310051D19Rik  RIKEN cDNA 2310051D19 gene  Myof  myoferlin  Symbol and/or name change 5135510 APPROVED
2024-08-21 Myof  myoferlin  2310051D19Rik  RIKEN cDNA 2310051D19 gene  Symbol and/or name change 5135510 APPROVED
2024-08-21 2310051D19Rik  RIKEN cDNA 2310051D19 gene  Myof  myoferlin  Symbol and/or name change 5135510 APPROVED