Edil3 (EGF-like repeats and discoidin I-like domains 3) - Rat Genome Database

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Gene: Edil3 (EGF-like repeats and discoidin I-like domains 3) Mus musculus
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Symbol: Edil3
Name: EGF-like repeats and discoidin I-like domains 3
RGD ID: 1557383
MGI Page MGI
Description: Predicted to enable calcium ion binding activity. Acts upstream of or within positive regulation of cell-substrate adhesion. Predicted to be located in extracellular region. Is expressed in several structures, including cartilage; cerebral cortex; heart; skeletal system; and trachea. Orthologous to human EDIL3 (EGF like repeats and discoidin domains 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Del; Del-; Del-1; Del1; developmental endothelial locus-1; developmentally-regulated endothelial cell locus 1 protein; EGF-like repeat and discoidin I-like domain-containing protein 3; integrin-binding protein DEL1; Sox2-cre; Sox2Cre; Tg(Sox2-cre)1Amc
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm18980  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391388,969,591 - 89,471,344 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1388,969,591 - 89,471,342 (+)EnsemblGRCm39 Ensembl
GRCm381388,821,472 - 89,323,225 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1388,821,472 - 89,323,223 (+)EnsemblGRCm38mm10GRCm38
MGSCv371388,961,077 - 89,462,830 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361389,295,717 - 89,797,065 (+)NCBIMGSCv36mm8
Celera1392,422,307 - 92,915,061 (+)NCBICelera
Cytogenetic Map13C3NCBI
cM Map1345.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
2,3',4,4',5-Pentachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
4,4'-sulfonyldiphenol  (EXP)
5-fluorouracil  (ISO)
aflatoxin B1  (ISO)
aflatoxin M1  (ISO)
all-trans-retinoic acid  (ISO)
amphetamine  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (EXP)
benzo[e]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (EXP)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
curcumin  (ISO)
decabromodiphenyl ether  (ISO)
diclofenac  (EXP)
dioxygen  (ISO)
diquat  (EXP)
disulfiram  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
Enterolactone  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
geldanamycin  (ISO)
glyphosate  (ISO)
iron dichloride  (ISO)
lead(0)  (ISO)
lipopolysaccharide  (ISO)
methapyrilene  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
nickel atom  (ISO)
nickel sulfate  (ISO)
O-methyleugenol  (ISO)
ozone  (EXP)
paracetamol  (ISO)
paraquat  (ISO)
phenformin  (ISO)
phenylmercury acetate  (ISO)
potassium dichromate  (ISO)
rotenone  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
serpentine asbestos  (ISO)
sodium arsenite  (EXP)
succimer  (EXP)
tamoxifen  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (ISO)
titanium dioxide  (EXP)
tunicamycin  (EXP)
valproic acid  (ISO)
withaferin A  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal allantois morphology  (IAGP)
abnormal angiogenesis  (IAGP)
abnormal anterior definitive endoderm morphology  (IAGP)
abnormal anus morphology  (IAGP)
abnormal aorta smooth muscle morphology  (IAGP)
abnormal apoptosis  (IAGP)
abnormal articular cartilage morphology  (IAGP)
abnormal ascending aorta morphology  (IAGP)
abnormal atrioventricular cushion morphology  (IAGP)
abnormal autopod morphology  (IAGP)
abnormal axial skeleton morphology  (IAGP)
abnormal axon fasciculation  (IAGP)
abnormal axon guidance  (IAGP)
abnormal basement membrane morphology  (IAGP)
abnormal Bergmann glial cell morphology  (IAGP)
abnormal blood-brain barrier function  (IAGP)
abnormal brain development  (IAGP)
abnormal brain meninges morphology  (IAGP)
abnormal brain morphology  (IAGP)
abnormal brain pia mater morphology  (IAGP)
abnormal carpal bone morphology  (IAGP)
abnormal cell adhesion  (IAGP)
abnormal cell cycle  (IAGP)
abnormal cell death  (IAGP)
abnormal cell physiology  (IAGP)
abnormal cellular extravasation  (IAGP)
abnormal cephalic neural fold morphology  (IAGP)
abnormal cerebellar foliation  (IAGP)
abnormal cerebellar granule layer morphology  (IAGP)
abnormal cerebellar Purkinje cell layer  (IAGP)
abnormal cerebellum morphology  (IAGP)
abnormal chondrocyte differentiation  (IAGP)
abnormal choroid plexus morphology  (IAGP)
abnormal circulating protein level  (IAGP)
abnormal common myeloid progenitor cell morphology  (IAGP)
abnormal corpus callosum morphology  (IAGP)
abnormal craniofacial bone morphology  (IAGP)
abnormal dendrite morphology  (IAGP)
abnormal dendritic spine morphology  (IAGP)
abnormal descending aorta morphology  (IAGP)
abnormal developmental patterning  (IAGP)
abnormal digestive system development  (IAGP)
abnormal digit morphology  (IAGP)
abnormal direction of heart looping  (IAGP)
abnormal distal visceral endoderm morphology  (IAGP)
abnormal dorsal-ventral axis patterning  (IAGP)
abnormal embryo development  (IAGP)
abnormal embryo morphology  (IAGP)
abnormal embryo turning  (IAGP)
abnormal embryonic epiblast morphology  (IAGP)
abnormal embryonic neuroepithelial layer differentiation  (IAGP)
abnormal embryonic neuroepithelium morphology  (IAGP)
abnormal embryonic tissue morphology  (IAGP)
abnormal embryonic/fetal subventricular zone morphology  (IAGP)
abnormal endoderm development  (IAGP)
abnormal extraembryonic ectoderm morphology  (IAGP)
abnormal extraembryonic tissue morphology  (IAGP)
abnormal eye morphology  (IAGP)
abnormal fetal cardiomyocyte proliferation  (IAGP)
abnormal forebrain development  (IAGP)
abnormal forebrain morphology  (IAGP)
abnormal fourth ventricle morphology  (IAGP)
abnormal frontonasal prominence morphology  (IAGP)
abnormal gastrulation  (IAGP)
abnormal gastrulation movements  (IAGP)
abnormal germ layer development  (IAGP)
abnormal hair follicle development  (IAGP)
abnormal hair follicle orientation  (IAGP)
abnormal hair growth  (IAGP)
abnormal head fold morphology  (IAGP)
abnormal head morphology  (IAGP)
abnormal heart development  (IAGP)
abnormal heart left ventricle morphology  (IAGP)
abnormal heart looping  (IAGP)
abnormal heart morphology  (IAGP)
abnormal heart position or orientation  (IAGP)
abnormal hindbrain development  (IAGP)
abnormal hippocampus development  (IAGP)
abnormal hypodermis fat layer morphology  (IAGP)
abnormal inferior vena cava morphology  (IAGP)
abnormal inguinal fat pad morphology  (IAGP)
abnormal interventricular septum morphology  (IAGP)
abnormal kidney cell proliferation  (IAGP)
abnormal kidney collecting duct epithelium morphology  (IAGP)
abnormal kidney medulla development  (IAGP)
abnormal kidney morphology  (IAGP)
abnormal lateral ganglionic eminence morphology  (IAGP)
abnormal lateral plate mesoderm morphology  (IAGP)
abnormal left-right axis patterning  (IAGP)
abnormal leukocyte adhesion  (IAGP)
abnormal limb long bone morphology  (IAGP)
abnormal liver morphology  (IAGP)
abnormal liver parenchyma morphology  (IAGP)
abnormal liver vasculature morphology  (IAGP)
abnormal long bone diaphysis morphology  (IAGP)
abnormal long bone epiphyseal plate morphology  (IAGP)
abnormal long bone epiphyseal plate proliferative zone  (IAGP)
abnormal lung development  (IAGP)
abnormal lung position or orientation  (IAGP)
abnormal maxillary shelf morphology  (IAGP)
abnormal medial ganglionic eminence morphology  (IAGP)
abnormal mesendoderm development  (IAGP)
abnormal mesenteric fat pad morphology  (IAGP)
abnormal mesoderm development  (IAGP)
abnormal Muller cell morphology  (IAGP)
abnormal myocardial trabeculae morphology  (IAGP)
abnormal nervous system development  (IAGP)
abnormal neural tube closure  (IAGP)
abnormal neural tube morphology  (IAGP)
abnormal neurocranium morphology  (IAGP)
abnormal neuron proliferation  (IAGP)
abnormal neutrophil physiology  (IAGP)
abnormal notochordal plate morphology  (IAGP)
abnormal ocular fundus morphology  (IAGP)
abnormal olfactory epithelium morphology  (IAGP)
abnormal optic vesicle formation  (IAGP)
abnormal osteocyte morphology  (IAGP)
abnormal pinna cartilage morphology  (IAGP)
abnormal placenta labyrinth morphology  (IAGP)
abnormal placenta vasculature  (IAGP)
abnormal primitive node morphology  (IAGP)
abnormal primitive streak elongation  (IAGP)
abnormal primitive streak formation  (IAGP)
abnormal primitive streak morphology  (IAGP)
abnormal proerythroblast morphology  (IAGP)
abnormal Purkinje cell dendrite morphology  (IAGP)
abnormal radial glial cell morphology  (IAGP)
abnormal respiratory system morphology  (IAGP)
abnormal retina blood vessel morphology  (IAGP)
abnormal retina blood vessel pattern  (IAGP)
abnormal retina inner limiting membrane morphology  (IAGP)
abnormal retina neuronal layer morphology  (IAGP)
abnormal retina vasculature morphology  (IAGP)
abnormal rhombomere morphology  (IAGP)
abnormal right lung middle lobe morphology  (IAGP)
abnormal rostral-caudal axis patterning  (IAGP)
abnormal scala media morphology  (IAGP)
abnormal semicircular canal ampulla morphology  (IAGP)
abnormal semicircular canal morphology  (IAGP)
abnormal sinoatrial node conduction  (IAGP)
abnormal skeleton morphology  (IAGP)
abnormal somatic hypermutation frequency  (IAGP)
abnormal spatial learning  (IAGP)
abnormal spinal cord dorsal column morphology  (IAGP)
abnormal spinal cord ventral commissure morphology  (IAGP)
abnormal spleen development  (IAGP)
abnormal stomach position or orientation  (IAGP)
abnormal tail morphology  (IAGP)
abnormal tarsal bone morphology  (IAGP)
abnormal telencephalon development  (IAGP)
abnormal telencephalon morphology  (IAGP)
abnormal thalamus morphology  (IAGP)
abnormal tongue position  (IAGP)
abnormal tracheal cartilage morphology  (IAGP)
abnormal vascular development  (IAGP)
abnormal vasculogenesis  (IAGP)
abnormal vertebrae development  (IAGP)
abnormal vertebral column morphology  (IAGP)
abnormal visceral endoderm morphology  (IAGP)
abnormal visceral yolk sac morphology  (IAGP)
abnormal vitamin D level  (IAGP)
abnormal vitelline vasculature morphology  (IAGP)
abnormal white adipose tissue morphology  (IAGP)
abnormal white fat cell differentation  (IAGP)
absent adrenal gland  (IAGP)
absent coronary sinus  (IAGP)
absent forebrain  (IAGP)
absent foregut  (IAGP)
absent head fold  (IAGP)
absent hindgut  (IAGP)
absent kidney medulla  (IAGP)
absent mesoderm  (IAGP)
absent midbrain  (IAGP)
absent notochord  (IAGP)
absent olfactory bulb  (IAGP)
absent palatine bone  (IAGP)
absent primitive node  (IAGP)
absent primordial germ cells  (IAGP)
absent spleen  (IAGP)
absent startle reflex  (IAGP)
absent ulna  (IAGP)
astrocytosis  (IAGP)
atelectasis  (IAGP)
atrial septal defect  (IAGP)
cardia bifida  (IAGP)
caudal body truncation  (IAGP)
cellular necrosis  (IAGP)
circling  (IAGP)
cleft palate  (IAGP)
cleft secondary palate  (IAGP)
common atrioventricular valve  (IAGP)
cyanosis  (IAGP)
cyclopia  (IAGP)
decreased birth body size  (IAGP)
decreased birth weight  (IAGP)
decreased body length  (IAGP)
decreased body size  (IAGP)
decreased body weight  (IAGP)
decreased bone mineral density  (IAGP)
decreased bone mineralization  (IAGP)
decreased brain size  (IAGP)
decreased cell proliferation  (IAGP)
decreased chondrocyte apoptosis  (IAGP)
decreased chondrocyte proliferation  (IAGP)
decreased circulating phosphate level  (IAGP)
decreased compact bone thickness  (IAGP)
decreased double-positive T cell number  (IAGP)
decreased embryo size  (IAGP)
decreased embryonic neuroepithelial cell proliferation  (IAGP)
decreased embryonic neuroepithelium thickness  (IAGP)
decreased endolymph production  (IAGP)
decreased erythroid progenitor cell number  (IAGP)
decreased fetal size  (IAGP)
decreased fibroblast proliferation  (IAGP)
decreased forebrain size  (IAGP)
decreased kidney cell proliferation  (IAGP)
decreased lean body mass  (IAGP)
decreased lung weight  (IAGP)
decreased mesenchymal cell proliferation involved in lung development  (IAGP)
decreased neuron number  (IAGP)
decreased placental labyrinth size  (IAGP)
decreased small intestinal villus height  (IAGP)
delayed bone ossification  (IAGP)
delayed cranial suture closure  (IAGP)
delayed endochondral bone ossification  (IAGP)
delayed eyelid opening  (IAGP)
dextrocardia  (IAGP)
dilated liver sinusoidal space  (IAGP)
disorganized yolk sac vascular plexus  (IAGP)
disproportionate dwarf  (IAGP)
double outlet right ventricle  (IAGP)
edema  (IAGP)
embryonic growth arrest  (IAGP)
embryonic growth retardation  (IAGP)
embryonic lethality  (IAGP)
embryonic lethality between implantation and somite formation, complete penetrance  (IAGP)
embryonic lethality between somite formation and embryo turning, complete penetrance  (IAGP)
embryonic lethality during organogenesis  (IAGP)
embryonic lethality during organogenesis, complete penetrance  (IAGP)
embryonic lethality during organogenesis, incomplete penetrance  (IAGP)
embryonic lethality prior to organogenesis  (IAGP)
embryonic lethality prior to tooth bud stage  (IAGP)
embryonic lethality, complete penetrance  (IAGP)
embryonic lethality, incomplete penetrance  (IAGP)
enhanced leukocyte tethering or rolling  (IAGP)
enlarged brain ventricles  (IAGP)
enlarged heart  (IAGP)
enlarged pericardium  (IAGP)
excessive folding of visceral yolk sac  (IAGP)
exencephaly  (IAGP)
failure of chorioallantoic fusion  (IAGP)
failure of heart looping  (IAGP)
failure to gastrulate  (IAGP)
female infertility  (IAGP)
fetal growth retardation  (IAGP)
flat face  (IAGP)
floppy ears  (IAGP)
fragile skeleton  (IAGP)
fused somites  (IAGP)
gliosis  (IAGP)
hairless  (IAGP)
head bobbing  (IAGP)
heart hypoplasia  (IAGP)
hemorrhage  (IAGP)
heterotaxia  (IAGP)
hindlimb paralysis  (IAGP)
holoprosencephaly  (IAGP)
hydroureter  (IAGP)
hyperkeratosis  (IAGP)
impaired coordination  (IAGP)
impaired hematopoiesis  (IAGP)
impaired osteoblast differentiation  (IAGP)
impaired righting response  (IAGP)
impaired somite development  (IAGP)
impaired spatial working memory  (IAGP)
incomplete rostral neuropore closure  (IAGP)
increased aorta wall thickness  (IAGP)
increased apoptosis  (IAGP)
increased cell proliferation  (IAGP)
increased chondrocyte apoptosis  (IAGP)
increased circulating cholesterol level  (IAGP)
increased circulating LDL cholesterol level  (IAGP)
increased circulating parathyroid hormone level  (IAGP)
increased embryonic tissue cell apoptosis  (IAGP)
increased forebrain size  (IAGP)
increased heart rate  (IAGP)
increased hepatocyte apoptosis  (IAGP)
increased kidney apoptosis  (IAGP)
increased midbrain size  (IAGP)
increased mitotic index  (IAGP)
increased or absent threshold for auditory brainstem response  (IAGP)
increased physiological sensitivity to xenobiotic  (IAGP)
increased susceptibility to induced arthritis  (IAGP)
increased susceptibility to induced morbidity/mortality  (IAGP)
increased susceptibility to pharmacologically induced seizures  (IAGP)
increased white fat cell number  (IAGP)
increased width of hypertrophic chondrocyte zone  (IAGP)
internal hemorrhage  (IAGP)
intracranial hemorrhage  (IAGP)
joint contracture  (IAGP)
kinked tail  (IAGP)
lethality at weaning, complete penetrance  (IAGP)
lethality throughout fetal growth and development, complete penetrance  (IAGP)
lethality throughout fetal growth and development, incomplete penetrance  (IAGP)
limb grasping  (IAGP)
liver hypoplasia  (IAGP)
lung hemorrhage  (IAGP)
macrophthalmia  (IAGP)
male infertility  (IAGP)
mandible hypoplasia  (IAGP)
microcephaly  (IAGP)
microgliosis  (IAGP)
midline facial cleft  (IAGP)
neonatal lethality  (IAGP)
neonatal lethality, complete penetrance  (IAGP)
neonatal lethality, incomplete penetrance  (IAGP)
neuron degeneration  (IAGP)
no abnormal phenotype detected  (IAGP)
omphalocele  (IAGP)
open neural tube  (IAGP)
osteomalacia  (IAGP)
ostium primum atrial septal defect  (IAGP)
palatal shelves fail to meet at midline  (IAGP)
pale yolk sac  (IAGP)
pallor  (IAGP)
pericardial edema  (IAGP)
pericardial effusion  (IAGP)
perinatal lethality  (IAGP)
perinatal lethality, complete penetrance  (IAGP)
persistence of hyaloid vascular system  (IAGP)
polydactyly  (IAGP)
postnatal growth retardation  (IAGP)
postnatal lethality, complete penetrance  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
preaxial polydactyly  (IAGP)
premature death  (IAGP)
prenatal lethality  (IAGP)
prenatal lethality, complete penetrance  (IAGP)
preweaning lethality, complete penetrance  (IAGP)
primary sex reversal  (IAGP)
proboscis  (IAGP)
radial glial endfoot detachment  (IAGP)
reduced cerebellar foliation  (IAGP)
retina degeneration  (IAGP)
retina outer nuclear layer degeneration  (IAGP)
retina spots  (IAGP)
rickets  (IAGP)
right aortic arch  (IAGP)
right atrial isomerism  (IAGP)
right pulmonary isomerism  (IAGP)
right-sided stomach  (IAGP)
rostral body truncation  (IAGP)
short limbs  (IAGP)
short mandible  (IAGP)
short rostral-caudal axis  (IAGP)
short snout  (IAGP)
short stride length  (IAGP)
short tail  (IAGP)
small allantois  (IAGP)
small cerebellum  (IAGP)
small cranium  (IAGP)
small heart  (IAGP)
small intestinal villus atrophy  (IAGP)
small limb buds  (IAGP)
small liver  (IAGP)
small lung  (IAGP)
small scala media  (IAGP)
spina bifida  (IAGP)
spinal hemorrhage  (IAGP)
split xiphoid process  (IAGP)
sternum hypoplasia  (IAGP)
syndactyly  (IAGP)
synostosis  (IAGP)
thin dermal layer  (IAGP)
thin lung-associated mesenchyme  (IAGP)
thin retina inner nuclear layer  (IAGP)
thin retina inner plexiform layer  (IAGP)
thin ventricular wall  (IAGP)
thymus atrophy  (IAGP)
transposition of great arteries  (IAGP)
truncated foregut  (IAGP)
truncated loop of Henle  (IAGP)
ventricular septal defect  (IAGP)
vitreal fibroplasia  (IAGP)
wavy neural tube  (IAGP)
weight loss  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. Mouse MP Annotation Import Pipeline RGD automated import pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:9420328   PMID:9778496   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11959660   PMID:12074641   PMID:12477932   PMID:12842913  
PMID:14516668   PMID:14595839   PMID:14595840   PMID:14648841   PMID:14981004   PMID:15004195   PMID:15215210   PMID:15302604   PMID:15576405   PMID:15750184   PMID:15964546   PMID:16054034  
PMID:16141072   PMID:16141073   PMID:16163358   PMID:16302230   PMID:16467350   PMID:16611729   PMID:16854976   PMID:16887817   PMID:17000767   PMID:17060609   PMID:17198697   PMID:17274974  
PMID:17300215   PMID:17360442   PMID:17417799   PMID:17468181   PMID:17507410   PMID:17619227   PMID:17639082   PMID:17699604   PMID:17701220   PMID:17764695   PMID:17765677   PMID:17928203  
PMID:18028899   PMID:18039967   PMID:18171685   PMID:18257058   PMID:18353300   PMID:18367557   PMID:18395198   PMID:18440989   PMID:18509025   PMID:18534562   PMID:18550708   PMID:18550710  
PMID:18552834   PMID:18693278   PMID:18757743   PMID:18776147   PMID:18816823   PMID:18832390   PMID:18854136   PMID:18974357   PMID:18981216   PMID:19008446   PMID:19023080   PMID:19060336  
PMID:19219045   PMID:19223465   PMID:19279185   PMID:19304888   PMID:19307312   PMID:19369401   PMID:19464366   PMID:19591821   PMID:19644017   PMID:19690388   PMID:19830823   PMID:19837032  
PMID:19882669   PMID:20040491   PMID:20048158   PMID:20064391   PMID:20079728   PMID:20080598   PMID:20131354   PMID:20171188   PMID:20211162   PMID:20336610   PMID:20424607   PMID:20501593  
PMID:20534447   PMID:20562861   PMID:20573697   PMID:20577047   PMID:20645310   PMID:20667977   PMID:20689803   PMID:20702562   PMID:20708584   PMID:20810566   PMID:20940229   PMID:20944551  
PMID:20971813   PMID:20978237   PMID:20981831   PMID:21094155   PMID:21146513   PMID:21159644   PMID:21245162   PMID:21254335   PMID:21261756   PMID:21303848   PMID:21308776   PMID:21357675  
PMID:21396893   PMID:21403399   PMID:21445260   PMID:21482783   PMID:21515253   PMID:21518438   PMID:21576365   PMID:21664579   PMID:21672919   PMID:21677750   PMID:21693517   PMID:21768366  
PMID:21768372   PMID:21785219   PMID:21822279   PMID:21873635   PMID:21947295   PMID:21949399   PMID:21983115   PMID:22002996   PMID:22075149   PMID:22110054   PMID:22190642   PMID:22206758  
PMID:22228100   PMID:22262898   PMID:22274713   PMID:22342906   PMID:22370991   PMID:22383895   PMID:22388320   PMID:22412348   PMID:22447028   PMID:22453236   PMID:22467476   PMID:22516201  
PMID:22526732   PMID:22534068   PMID:22573614   PMID:22615579   PMID:22669107   PMID:22675207   PMID:22763239   PMID:22767514   PMID:22833677   PMID:22849425   PMID:22911783   PMID:22936805  
PMID:22939930   PMID:22991437   PMID:23028370   PMID:23049968   PMID:23085236   PMID:23102580   PMID:23142660   PMID:23184148   PMID:23188715   PMID:23197651   PMID:23217742   PMID:23236180  
PMID:23303524   PMID:23319618   PMID:23357576   PMID:23360481   PMID:23364949   PMID:23386621   PMID:23395636   PMID:23405214   PMID:23420014   PMID:23422828   PMID:23542786   PMID:23592779  
PMID:23599344   PMID:23661808   PMID:23747598   PMID:23824717   PMID:23880317   PMID:23918801   PMID:24043815   PMID:24045785   PMID:24053666   PMID:24060278   PMID:24126911   PMID:24165879  
PMID:24168030   PMID:24176640   PMID:24262794   PMID:24277939   PMID:24301314   PMID:24301385   PMID:24310815   PMID:24411735   PMID:24416060   PMID:24448552   PMID:24496616   PMID:24504014  
PMID:24516401   PMID:24525119   PMID:24706806   PMID:24720953   PMID:24812355   PMID:24870238   PMID:24895408   PMID:24948605   PMID:24990743   PMID:24992337   PMID:24995796   PMID:25121932  
PMID:25150276   PMID:25190059   PMID:25263278   PMID:25294940   PMID:25296024   PMID:25323585   PMID:25352636   PMID:25360623   PMID:25374360   PMID:25385367   PMID:25419850   PMID:25452119  
PMID:25457166   PMID:25468569   PMID:25480920   PMID:25512563   PMID:25521757   PMID:25533200   PMID:25542016   PMID:25609086   PMID:25625625   PMID:25652406   PMID:25712475   PMID:25758223  
PMID:25770146   PMID:25809849   PMID:25907228   PMID:25910836   PMID:25915623   PMID:25953344   PMID:25959730   PMID:25980764   PMID:25987250   PMID:26062878   PMID:26087164   PMID:26116663  
PMID:26116666   PMID:26157009   PMID:26206889   PMID:26208884   PMID:26219237   PMID:26232697   PMID:26235619   PMID:26243430   PMID:26276812   PMID:26285813   PMID:26290337   PMID:26292834  
PMID:26324849   PMID:26337800   PMID:26374165   PMID:26384464   PMID:26392540   PMID:26418459   PMID:26462119   PMID:26468082   PMID:26487719   PMID:26494787   PMID:26496195   PMID:26517967  
PMID:26527006   PMID:26534985   PMID:26546820   PMID:26553930   PMID:26627734   PMID:26629949   PMID:26630461   PMID:26657898   PMID:26677802   PMID:26688546   PMID:26766444   PMID:26789794  
PMID:26809587   PMID:26814233   PMID:26832838   PMID:26846852   PMID:26851218   PMID:26859351   PMID:26897025   PMID:26898469   PMID:26908622   PMID:26919979   PMID:26921005   PMID:26933123  
PMID:26935106   PMID:26935107   PMID:27005486   PMID:27134141   PMID:27172213   PMID:27175020   PMID:27179789   PMID:27217206   PMID:27297885   PMID:27399837   PMID:27430022   PMID:27432740  
PMID:27505251   PMID:27510895   PMID:27521049   PMID:27542829   PMID:27577855   PMID:27642011   PMID:27645259   PMID:27707970   PMID:27779214   PMID:27784857   PMID:27836432   PMID:27870829  
PMID:27875531   PMID:27892606   PMID:27924807   PMID:27956704   PMID:27991852   PMID:28041967   PMID:28049691   PMID:28069890   PMID:28176446   PMID:28182703   PMID:28193997   PMID:28263766  
PMID:28292423   PMID:28320971   PMID:28337978   PMID:28387983   PMID:28388409   PMID:28422762   PMID:28446132   PMID:28447099   PMID:28461334   PMID:28475610   PMID:28535371   PMID:28600325  
PMID:28604743   PMID:28646547   PMID:28649987   PMID:28682643   PMID:28708136   PMID:28715449   PMID:28720882   PMID:28737513   PMID:28760865   PMID:28783163   PMID:28844842   PMID:28846069  
PMID:28862703   PMID:28892044   PMID:28919206   PMID:28964716   PMID:28974424   PMID:29040414   PMID:29056748   PMID:29073363   PMID:29078393   PMID:29097735   PMID:29158444   PMID:29182679  
PMID:29203676   PMID:29229773   PMID:29298325   PMID:29301908   PMID:29317263   PMID:29329488   PMID:29361553   PMID:29415061   PMID:29488390   PMID:29529029   PMID:29540680   PMID:29590634  
PMID:29615464   PMID:29684347   PMID:29705331   PMID:29743203   PMID:29915126   PMID:29967292   PMID:29968717   PMID:29972353   PMID:29973689   PMID:30011852   PMID:30054448   PMID:30098009  
PMID:30225912   PMID:30228103   PMID:30301924   PMID:30365547   PMID:30446626   PMID:30455459   PMID:30503207   PMID:30504823   PMID:30530745   PMID:30530861   PMID:30538199   PMID:30559290  
PMID:30642949   PMID:30659012   PMID:30743056   PMID:30789911   PMID:30842446   PMID:30950395   PMID:30959515   PMID:30979871   PMID:31027966   PMID:31036553   PMID:31066677   PMID:31090538  
PMID:31130414   PMID:31140976   PMID:31178404   PMID:31219578   PMID:31235823   PMID:31276493   PMID:31290205   PMID:31328806   PMID:31371508   PMID:31451639   PMID:31506547   PMID:31600785  
PMID:31729819   PMID:31732107   PMID:31754387   PMID:31792383   PMID:31800012   PMID:31944180   PMID:31950080   PMID:31980574   PMID:31993640   PMID:32044379   PMID:32047156   PMID:32073399  
PMID:32075740   PMID:32117240   PMID:32198142   PMID:32229310   PMID:32229702   PMID:32267211   PMID:32273386   PMID:32280065   PMID:32319885   PMID:32394892   PMID:32418267   PMID:32428860  
PMID:32439758   PMID:32466118   PMID:32511952   PMID:32521258   PMID:32658897   PMID:32673396   PMID:32692983   PMID:32702291   PMID:32795468   PMID:32817592   PMID:32821835   PMID:32851726  
PMID:32891704   PMID:32907542   PMID:32954935   PMID:32976492   PMID:33091369   PMID:33150866   PMID:33175657   PMID:33199445   PMID:33202307   PMID:33247143   PMID:33298461   PMID:33359894  
PMID:33370780   PMID:33420489   PMID:33484637   PMID:33497368   PMID:33545050   PMID:33555254   PMID:33620316   PMID:33622776   PMID:33715275   PMID:33745227   PMID:33767158   PMID:33857019  
PMID:33899734   PMID:34002394   PMID:34024116   PMID:34029538   PMID:34100066   PMID:34124068   PMID:34321999   PMID:34344536   PMID:34375400   PMID:34407397   PMID:34446717   PMID:34506849  
PMID:34538531   PMID:34620876   PMID:34703992   PMID:34738614   PMID:34767447   PMID:34791217   PMID:34942119   PMID:34955752   PMID:35021072   PMID:35120522   PMID:35133978   PMID:35139074  
PMID:35177595   PMID:35274968   PMID:35276131   PMID:35318328   PMID:35338200   PMID:35364055   PMID:35404950   PMID:35476530   PMID:35476669   PMID:35571367   PMID:35597240   PMID:35597806  
PMID:35653516   PMID:35665537   PMID:35729193   PMID:35768632   PMID:35772791   PMID:35977516   PMID:36026468   PMID:36065978   PMID:36171203   PMID:36302779   PMID:36305473   PMID:36706168  
PMID:36745682   PMID:36848184   PMID:36859534   PMID:37012455   PMID:37080203   PMID:37173343   PMID:37373387   PMID:37627279   PMID:37766963   PMID:37795949   PMID:37917195   PMID:37923392  
PMID:37956894   PMID:37967560   PMID:38014224   PMID:38102743   PMID:38113263   PMID:38247505   PMID:38261928   PMID:38266080   PMID:38359745   PMID:38373629   PMID:38396634   PMID:38397122  
PMID:38453366   PMID:38456416   PMID:38676926   PMID:38726925   PMID:38758779   PMID:38777609  


Genomics

Comparative Map Data
Edil3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391388,969,591 - 89,471,344 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1388,969,591 - 89,471,342 (+)EnsemblGRCm39 Ensembl
GRCm381388,821,472 - 89,323,225 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1388,821,472 - 89,323,223 (+)EnsemblGRCm38mm10GRCm38
MGSCv371388,961,077 - 89,462,830 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361389,295,717 - 89,797,065 (+)NCBIMGSCv36mm8
Celera1392,422,307 - 92,915,061 (+)NCBICelera
Cytogenetic Map13C3NCBI
cM Map1345.3NCBI
EDIL3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38583,940,554 - 84,384,880 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl583,940,554 - 84,384,880 (-)EnsemblGRCh38hg38GRCh38
GRCh37583,236,373 - 83,680,698 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36583,273,882 - 83,716,367 (-)NCBINCBI36Build 36hg18NCBI36
Build 34583,273,881 - 83,716,367NCBI
Celera579,143,254 - 79,585,747 (-)NCBICelera
Cytogenetic Map5q14.3NCBI
HuRef578,443,483 - 78,887,547 (-)NCBIHuRef
CHM1_1582,669,378 - 83,113,659 (-)NCBICHM1_1
T2T-CHM13v2.0584,429,063 - 84,873,508 (-)NCBIT2T-CHM13v2.0
Edil3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8221,625,604 - 22,140,380 (+)NCBIGRCr8
mRatBN7.2219,890,396 - 20,405,028 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl219,890,373 - 20,405,008 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0217,616,116 - 18,128,514 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl217,616,401 - 18,128,512 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0217,491,420 - 18,004,418 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4219,057,636 - 19,346,196 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera216,040,531 - 16,554,059 (+)NCBICelera
Cytogenetic Map2q12NCBI
Edil3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541826,391,299 - 26,680,553 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541826,391,309 - 26,680,553 (+)NCBIChiLan1.0ChiLan1.0
EDIL3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2430,916,371 - 31,358,586 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1529,069,996 - 29,512,211 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0530,895,036 - 31,337,176 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1531,215,261 - 31,657,076 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl531,215,260 - 31,654,250 (+)Ensemblpanpan1.1panPan2
EDIL3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1323,417,889 - 23,811,270 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl323,417,835 - 23,808,538 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha324,656,031 - 25,049,581 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0323,317,370 - 23,710,657 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl323,317,283 - 23,710,644 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1323,275,472 - 23,668,218 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0323,247,538 - 23,640,459 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0323,534,804 - 23,928,011 (+)NCBIUU_Cfam_GSD_1.0
Edil3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213179,234,376 - 179,627,376 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364692,996,348 - 3,391,721 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364692,998,424 - 3,391,386 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EDIL3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl292,123,345 - 92,554,191 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1292,122,495 - 92,554,351 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2294,207,480 - 94,655,178 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EDIL3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1478,047,780 - 78,491,217 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl478,047,503 - 78,491,075 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604926,961,846 - 27,416,666 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Edil3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247434,057,687 - 4,481,888 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247434,059,274 - 4,481,999 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Edil3
18169 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2009
Count of miRNA genes:676
Interacting mature miRNAs:851
Transcripts:ENSMUST00000043111, ENSMUST00000081769, ENSMUST00000118731, ENSMUST00000133761, ENSMUST00000134241, ENSMUST00000137921, ENSMUST00000140625, ENSMUST00000153974
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558741Ses10_msalmonella enteritidis susceptibility 10 (mouse)Not determined1382739968116740106Mouse
12879495Fexq1_mfear expression QTL 1 (mouse)137826885895836553Mouse
10043997Bw40_mbody weight QTL 40 (mouse)Not determined1479239045113239162Mouse
1301593Heal8_mwound healing/regeneration 8 (mouse)Not determined1368053999102054119Mouse
4142314Tailaq3_mtail length adjusted QTL 3 (mouse)Not determined55720354112431103Mouse
10412235Scgq5_mspontaneous crescentic glomerulonephritis QTL 5 (mouse)Not determined133606090896239162Mouse
1301445Listr2_mlisteriosis resistance 2 (mouse)Not determined1366744601100744746Mouse
12880402Emlq1_memotional learning QTL 1 (mouse)137810885896866553Mouse
4141992W6q16_mweight 6 weeks QTL 16 (mouse)Not determined55720354112431103Mouse
12880414V125Dq10_mvitamin D active form serum level QTL 10 (mouse)1378036508112036508Mouse
10412163Wra1_mwheel running activity 1 (mouse)Not determined135913260093132738Mouse
1300941Skl6_mskeletal size (tail length) 6 (mouse)Not determined136425082198250945Mouse
4142241Tailq3_mtail length QTL 3 (mouse)Not determined55720354112431103Mouse
14747007Mancz11_mmandible centroid size 11 (mouse)1370111284104111284Mouse
4141728Egaq4_mearly growth adjusted QTL 4 (mouse)Not determined87901985112431103Mouse
4140959W10q17_mweight 10 weeks QTL 17 (mouse)Not determined55720354112431103Mouse
1357553Cia28_mcollagen induced arthritis 28 (mouse)Not determined135662924996239162Mouse
4141266Mol3_mmodifier of LPS-response 3 (mouse)Not determined76132600112431103Mouse
1301949Skull20_mskull morphology 20 (mouse)Not determined136425082198250945Mouse
10045623Heal18_mwound healing regeneration 18 (mouse)Not determined1379239045113239162Mouse
1357563Bmch6_mbone mechanical trait 6 (mouse)Not determined135538498089385140Mouse
10402414Sgp5_mserum gp70 production 5 (mouse)Not determined1356470456105422186Mouse
14700691Cisaq1_mcoxsackieviral infection serum ALT QTL 1 (mouse)1386148119120461536Mouse
14696726Kidrq3_mkidney weight, right QTL 3 (mouse)1368217066102217066Mouse
1301610Dps1_mdelta power in slow-wave sleep 1 (mouse)Not determined137719586295730894Mouse
4140995Fbtq6_mfemoral bone trait QTL 6 (mouse)Not determined1386341617120341758Mouse
4142147Mvwf4_mmodifier of von Willebrand factor 4 (mouse)Not determined20477612112898424Mouse
4142465Pbwg17_mpostnatal body weight growth 17 (mouse)Not determined1383876060117876256Mouse

Markers in Region
BB096898  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381389,320,286 - 89,320,434UniSTSGRCm38
MGSCv371389,459,891 - 89,460,039UniSTSGRCm37
Celera1392,912,122 - 92,912,270UniSTS
Cytogenetic Map13C3UniSTS
Whitehead/MRC_RH13746.05UniSTS
Edil3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map13C3UniSTS
cM Map13 UniSTS
px-10_b2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381389,272,404 - 89,272,694UniSTSGRCm38
MGSCv371389,412,009 - 89,412,299UniSTSGRCm37
Celera1392,864,316 - 92,864,606UniSTS
Cytogenetic Map13C3UniSTS
Edil3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map13C3UniSTS
Edil3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map13C3UniSTS
cM Map13 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001037987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_010103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC121916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC154668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC161244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF031524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF031525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK044978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK045088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK045839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK081003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK084215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK084810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK139093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK141907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC056386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY701378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT010458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000043111   ⟹   ENSMUSP00000044652
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1388,969,761 - 89,471,342 (+)Ensembl
GRCm38.p6 Ensembl1388,821,642 - 89,323,223 (+)Ensembl
Ensembl Acc Id: ENSMUST00000081769   ⟹   ENSMUSP00000080462
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1388,969,630 - 89,471,342 (+)Ensembl
GRCm38.p6 Ensembl1388,821,511 - 89,323,223 (+)Ensembl
Ensembl Acc Id: ENSMUST00000118731   ⟹   ENSMUSP00000112829
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1388,969,591 - 89,348,657 (+)Ensembl
GRCm38.p6 Ensembl1388,821,472 - 89,200,538 (+)Ensembl
Ensembl Acc Id: ENSMUST00000133761
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1388,969,679 - 88,978,010 (+)Ensembl
GRCm38.p6 Ensembl1388,821,560 - 88,829,891 (+)Ensembl
Ensembl Acc Id: ENSMUST00000134241
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1388,969,676 - 89,126,359 (+)Ensembl
GRCm38.p6 Ensembl1388,821,557 - 88,978,240 (+)Ensembl
Ensembl Acc Id: ENSMUST00000137921
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1388,969,733 - 89,192,814 (+)Ensembl
GRCm38.p6 Ensembl1388,821,614 - 89,044,695 (+)Ensembl
Ensembl Acc Id: ENSMUST00000140625
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1388,969,737 - 89,244,627 (+)Ensembl
GRCm38.p6 Ensembl1388,821,618 - 89,096,508 (+)Ensembl
Ensembl Acc Id: ENSMUST00000153974
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1388,969,607 - 89,281,277 (+)Ensembl
GRCm38.p6 Ensembl1388,821,488 - 89,133,158 (+)Ensembl
RefSeq Acc Id: NM_001037987   ⟹   NP_001033076
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391388,969,601 - 89,470,657 (+)NCBI
GRCm381388,821,472 - 89,323,225 (+)ENTREZGENE
MGSCv371388,961,077 - 89,462,830 (+)RGD
Celera1392,422,307 - 92,915,061 (+)RGD
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_010103   ⟹   NP_034233
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391388,969,591 - 89,471,344 (+)NCBI
GRCm381388,821,472 - 89,323,225 (+)ENTREZGENE
MGSCv371388,961,077 - 89,462,830 (+)RGD
Celera1392,422,307 - 92,915,061 (+)RGD
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_001033076   ⟸   NM_001037987
- Peptide Label: isoform a precursor
- UniProtKB: O35475 (UniProtKB/Swiss-Prot),   Q8CBF7 (UniProtKB/Swiss-Prot),   O35474 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_034233   ⟸   NM_010103
- Peptide Label: isoform b precursor
- UniProtKB: Q8C4U8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000112829   ⟸   ENSMUST00000118731
Ensembl Acc Id: ENSMUSP00000080462   ⟸   ENSMUST00000081769
Ensembl Acc Id: ENSMUSP00000044652   ⟸   ENSMUST00000043111
Protein Domains
EGF-like   F5/8 type C

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O35474-F1-model_v2 AlphaFold O35474 1-480 view protein structure

Promoters
RGD ID:8680938
Promoter ID:EPDNEW_M18500
Type:multiple initiation site
Name:Edil3_1
Description:Mus musculus EGF-like repeats and discoidin I-like domains 3, transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381388,821,488 - 88,821,548EPDNEW
RGD ID:6823842
Promoter ID:MM_KWN:14842
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000118731,   NM_001037987,   NM_010103,   OTTMUST00000068693,   OTTMUST00000068697,   UC007RIZ.1,   UC007RJA.1,   UC007RJB.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361388,960,516 - 88,961,607 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1329025 AgrOrtholog
Ensembl Genes ENSMUSG00000034488 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000043111 ENTREZGENE
  ENSMUST00000043111.7 UniProtKB/TrEMBL
  ENSMUST00000081769 ENTREZGENE
  ENSMUST00000081769.13 UniProtKB/Swiss-Prot
  ENSMUST00000118731.8 UniProtKB/TrEMBL
Gene3D-CATH Galactose-binding domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Laminin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro EGF-like_Ca-bd_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF-like_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF-type_Asp/Asn_hydroxyl_site UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF_Ca-bd_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FA58C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Galactose-bd-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Neuropilin_MCO_CoagFactor UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:13612 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1329025 ENTREZGENE
NCBI Gene 13612 ENTREZGENE
PANTHER EGF-LIKE REPEAT AND DISCOIDIN I-LIKE DOMAIN-CONTAINING PROTEIN 3 PRECURSOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  F5/8 TYPE C DOMAIN-CONTAINING PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam EGF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  F5_F8_type_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  hEGF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Edil3 PhenoGen
PROSITE ASX_HYDROXYL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF_CA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FA58C_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FA58C_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FA58C_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART EGF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF_CA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FA58C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF49785 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt EDIL3_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  O35475 ENTREZGENE
  Q8C4U8 ENTREZGENE, UniProtKB/TrEMBL
  Q8C8K0_MOUSE UniProtKB/TrEMBL
  Q8CBF7 ENTREZGENE
UniProt Secondary O35475 UniProtKB/Swiss-Prot
  Q8CBF7 UniProtKB/Swiss-Prot