Cidec (cell death-inducing DFFA-like effector c) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Cidec (cell death-inducing DFFA-like effector c) Mus musculus
Analyze
Symbol: Cidec
Name: cell death-inducing DFFA-like effector c
RGD ID: 1557270
MGI Page MGI
Description: Enables lipid transfer activity; molecular condensate scaffold activity; and phospholipid binding activity. Involved in lipid droplet fusion; lipid storage; and negative regulation of lipid metabolic process. Is active in lipid droplet. Is expressed in several structures, including alimentary system; endocrine gland; genitourinary system; hemolymphoid system gland; and integumental system. Human ortholog(s) of this gene implicated in familial partial lipodystrophy type 5. Orthologous to human CIDEC (cell death inducing DFFA like effector c).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cell death activator CIDE-3; cell death-inducing DFFA-like effector protein C; CIDE-; CIDE-3; CIDE-3alpha; fat specific gene 27; fat-specific protein FSP27; Fsp; Fsp27; lipid transferase CIDEC
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396113,401,595 - 113,412,721 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6113,401,595 - 113,412,721 (-)EnsemblGRCm39 Ensembl
GRCm386113,424,634 - 113,435,760 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6113,424,634 - 113,435,760 (-)EnsemblGRCm38mm10GRCm38
MGSCv376113,374,630 - 113,385,749 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366113,390,413 - 113,401,532 (-)NCBIMGSCv36mm8
Celera6115,251,600 - 115,262,724 (-)NCBICelera
Cytogenetic Map6E3NCBI
cM Map652.76NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(R)-pantothenic acid  (ISO)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
1-chloro-2,4-dinitrobenzene  (ISO)
15-deoxy-Delta(12,14)-prostaglandin J2  (EXP)
17beta-estradiol  (EXP,ISO)
1H-pyrazole  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2-chloroethanol  (EXP)
3,3',5,5'-tetrabromobisphenol A  (EXP)
3,4-methylenedioxymethamphetamine  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (EXP,ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (ISO)
4-phenylbutyric acid  (EXP)
7,12-dimethyltetraphene  (ISO)
8-Br-cAMP  (EXP)
acetamide  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
alpha-Zearalanol  (ISO)
amiodarone  (EXP)
amphetamine  (ISO)
arotinoid acid  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (EXP)
beta-lapachone  (ISO)
biotin  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
cadmium atom  (EXP)
cadmium dichloride  (EXP)
cantharidin  (EXP)
captan  (EXP)
carbon nanotube  (EXP)
CHIR 99021  (ISO)
chlordecone  (EXP)
choline  (EXP)
ciglitazone  (ISO)
ciguatoxin CTX1B  (EXP)
cisplatin  (ISO)
clofibrate  (EXP)
cobalt atom  (ISO)
cobalt dichloride  (ISO)
colforsin daropate hydrochloride  (EXP)
cortisol  (ISO)
cyclosporin A  (EXP,ISO)
dexamethasone  (EXP,ISO)
dibutylstannane  (EXP,ISO)
diethyl malate  (ISO)
diethyl maleate  (ISO)
diquat  (EXP)
diuron  (ISO)
emodin  (EXP)
endosulfan  (ISO)
flutamide  (ISO)
folic acid  (EXP)
folpet  (EXP)
furan  (EXP)
genistein  (EXP)
graphene oxide  (EXP)
hexadecanoic acid  (ISO)
indinavir  (EXP)
indometacin  (ISO)
isoprenaline  (EXP)
KT 5720  (EXP)
L-ascorbic acid  (ISO)
L-ascorbic acid 2-phosphate  (ISO)
lamivudine  (EXP)
lipopolysaccharide  (EXP)
methyl methanesulfonate  (ISO)
monosodium L-glutamate  (EXP)
N-nitrosodiethylamine  (EXP)
N-nitrosodimethylamine  (ISO)
nefazodone  (ISO)
nickel atom  (ISO)
nickel sulfate  (ISO)
ochratoxin A  (ISO)
oleic acid  (ISO)
ozone  (EXP)
paracetamol  (EXP,ISO)
PCB138  (EXP)
perfluorohexanesulfonic acid  (EXP)
perfluorononanoic acid  (EXP)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP,ISO)
phenobarbital  (EXP)
pioglitazone  (EXP)
pirinixic acid  (EXP)
progesterone  (EXP)
Ptaquiloside  (EXP)
quercetin  (ISO)
quinoxyfen  (EXP,ISO)
rifaximin  (ISO)
saquinavir  (EXP)
SB 431542  (ISO)
silicon dioxide  (EXP)
sirolimus  (EXP)
sodium arsenite  (EXP)
sodium dichromate  (EXP,ISO)
tetrachloromethane  (EXP)
thioacetamide  (ISO)
thyroxine  (ISO)
titanium dioxide  (EXP)
tributylstannane  (EXP,ISO)
trichloroethene  (EXP,ISO)
triflumizole  (EXP,ISO)
triphenyl phosphate  (EXP,ISO)
Triptolide  (EXP)
triptonide  (EXP)
tris(2-butoxyethyl) phosphate  (ISO)
triticonazole  (ISO)
troglitazone  (EXP,ISO)
Tungsten carbide  (ISO)
tunicamycin  (EXP)
urethane  (EXP)
valdecoxib  (ISO)
valproic acid  (ISO)
XAV939  (ISO)
XL147  (EXP)
zidovudine  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (ISO,ISS,TAS)
endoplasmic reticulum  (IEA)
lipid droplet  (IDA,ISO)
nucleus  (IEA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal adaptive thermogenesis  (IAGP)
abnormal adipose tissue amount  (IAGP)
abnormal auditory brainstem response  (IEA)
abnormal blood homeostasis  (IAGP)
abnormal body weight  (IAGP)
abnormal brown adipose tissue morphology  (IAGP)
abnormal circulating lipid level  (IAGP)
abnormal fat cell morphology  (IAGP)
abnormal fat pad morphology  (IAGP)
abnormal gonadal fat pad morphology  (IAGP)
abnormal optic disk morphology  (IEA)
abnormal white adipose tissue morphology  (IAGP)
abnormal white adipose tissue physiology  (IAGP)
abnormal white fat cell morphology  (IAGP)
decreased circulating alkaline phosphatase level  (IEA)
decreased circulating free fatty acids level  (IAGP)
decreased circulating glucose level  (IAGP)
decreased circulating ketone body level  (IAGP)
decreased circulating leptin level  (IAGP)
decreased circulating triglyceride level  (IAGP)
decreased gonadal fat pad weight  (IAGP)
decreased inguinal fat pad weight  (IAGP)
decreased mesenteric fat pad weight  (IAGP)
decreased percent body fat/body weight  (IAGP)
decreased respiratory quotient  (IAGP)
decreased retroperitoneal fat pad weight  (IAGP)
decreased subcutaneous adipose tissue amount  (IAGP)
decreased susceptibility to age related obesity  (IAGP)
decreased susceptibility to diet-induced hepatic steatosis  (IAGP)
decreased susceptibility to diet-induced obesity  (IAGP)
decreased total body fat amount  (IAGP)
decreased white adipose tissue amount  (IAGP)
decreased white fat cell size  (IAGP)
enhanced lipolysis  (IAGP)
hepatic steatosis  (IAGP)
hyperactivity  (IAGP)
impaired adaptive thermogenesis  (IAGP)
improved glucose tolerance  (IAGP)
increased adipocyte glucose uptake  (IAGP)
increased body temperature  (IAGP)
increased brown adipose tissue amount  (IAGP)
increased circulating alanine transaminase level  (IAGP)
increased circulating cholesterol level  (IEA)
increased circulating free fatty acids level  (IAGP)
increased circulating insulin level  (IAGP)
increased circulating triglyceride level  (IAGP)
increased energy expenditure  (IAGP)
increased fasting circulating glucose level  (IEA)
increased food intake  (IAGP)
increased insulin sensitivity  (IAGP)
increased lean body mass  (IAGP)
increased oxygen consumption  (IAGP)
increased respiratory quotient  (IAGP)
insulin resistance  (IAGP)
no abnormal phenotype detected  (IAGP)
persistence of hyaloid vascular system  (IEA)
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. Comparative analysis of apoptosis and inflammation genes of mice and humans. Reed JC, etal., Genome Res 2003 Jun;13(6B):1376-88.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1339452   PMID:9867840   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12429024   PMID:12477932   PMID:12910269   PMID:14610273   PMID:16141072   PMID:16141073  
PMID:17884815   PMID:18198355   PMID:18334488   PMID:18396136   PMID:18654663   PMID:18682832   PMID:18702959   PMID:18845124   PMID:19258494   PMID:20089860   PMID:20542418   PMID:20649970  
PMID:21103377   PMID:21521693   PMID:21677750   PMID:21873635   PMID:22144693   PMID:22245780   PMID:22790028   PMID:23149622   PMID:23192040   PMID:23204327   PMID:23220584   PMID:23233732  
PMID:23481402   PMID:24189421   PMID:24369348   PMID:24391757   PMID:24627478   PMID:24636991   PMID:25125366   PMID:25158853   PMID:25315694   PMID:25477509   PMID:25565658   PMID:26099526  
PMID:26176546   PMID:26367078   PMID:26417690   PMID:26484280   PMID:26609809   PMID:26733203   PMID:26921608   PMID:26963625   PMID:27884961   PMID:28007964   PMID:28287402   PMID:28490632  
PMID:28566630   PMID:28656280   PMID:29454584   PMID:29986925   PMID:30361435   PMID:30400015   PMID:31564684   PMID:31846369   PMID:31919850   PMID:32553626   PMID:32732898   PMID:32958928  
PMID:34508658   PMID:36263170   PMID:36477540   PMID:38355793  


Genomics

Comparative Map Data
Cidec
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396113,401,595 - 113,412,721 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6113,401,595 - 113,412,721 (-)EnsemblGRCm39 Ensembl
GRCm386113,424,634 - 113,435,760 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6113,424,634 - 113,435,760 (-)EnsemblGRCm38mm10GRCm38
MGSCv376113,374,630 - 113,385,749 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366113,390,413 - 113,401,532 (-)NCBIMGSCv36mm8
Celera6115,251,600 - 115,262,724 (-)NCBICelera
Cytogenetic Map6E3NCBI
cM Map652.76NCBI
CIDEC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3839,866,710 - 9,880,253 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl39,866,711 - 9,880,255 (-)EnsemblGRCh38hg38GRCh38
GRCh3739,908,394 - 9,921,937 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3639,883,398 - 9,895,740 (-)NCBINCBI36Build 36hg18NCBI36
Build 3439,883,398 - 9,895,740NCBI
Celera39,843,853 - 9,856,196 (-)NCBICelera
Cytogenetic Map3p25.3NCBI
HuRef39,844,688 - 9,858,278 (-)NCBIHuRef
CHM1_139,858,598 - 9,872,132 (-)NCBICHM1_1
T2T-CHM13v2.039,858,718 - 9,872,261 (-)NCBIT2T-CHM13v2.0
Cidec
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84148,124,924 - 148,137,806 (-)NCBIGRCr8
mRatBN7.24146,569,288 - 146,582,173 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4146,569,289 - 146,582,173 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4151,953,209 - 151,966,039 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04147,734,054 - 147,746,884 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04146,355,674 - 146,368,501 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04145,377,482 - 145,390,497 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4145,377,431 - 145,390,497 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04208,674,528 - 208,687,883 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44149,307,986 - 149,321,303 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4135,125,642 - 135,138,206 (-)NCBICelera
Cytogenetic Map4q42NCBI
Cidec
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555611,363,907 - 1,376,144 (-)NCBIChiLan1.0ChiLan1.0
CIDEC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v229,871,509 - 9,895,113 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan139,876,268 - 9,900,349 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v039,811,995 - 9,836,069 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1310,048,161 - 10,174,570 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl310,048,554 - 10,173,107 (-)Ensemblpanpan1.1panPan2
CIDEC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1208,386,334 - 8,402,076 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl208,386,415 - 8,401,774 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha208,390,809 - 8,435,294 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0208,415,622 - 8,431,383 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl208,415,672 - 8,431,382 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1208,138,175 - 8,154,070 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0208,483,180 - 8,498,478 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0208,456,276 - 8,471,982 (+)NCBIUU_Cfam_GSD_1.0
Cidec
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494215,586,703 - 15,597,550 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366023,313,208 - 3,322,604 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366023,312,146 - 3,323,009 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CIDEC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1366,141,839 - 66,149,703 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11366,141,836 - 66,149,801 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21373,216,901 - 73,224,864 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CIDEC
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12245,895,455 - 45,917,236 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2245,895,249 - 45,910,658 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041120,646,801 - 120,668,336 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cidec
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247314,474,689 - 4,484,894 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247314,474,912 - 4,484,866 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1065
Count of miRNA genes:445
Interacting mature miRNAs:507
Transcripts:ENSMUST00000032416, ENSMUST00000113089, ENSMUST00000113091, ENSMUST00000133348
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683690851146954059Mouse
11252138Clas1_mcarcinogen-induced lung adenoma susceptibility 1 (mouse)6112246918146954059Mouse
1300887Pabr1_mplasma apolipoprotein B (human) regulator 1 (mouse)Not determined6103754405136400690Mouse
1301915Chab3_mcholesterol absorption 3 (mouse)Not determined698908709132916997Mouse
10043923Bhr7_mbronchial hyperresponsiveness 7 (mouse)Not determined698219814132219938Mouse
4141940W6q5_mweight 6 weeks QTL 5 (mouse)Not determined96632912146535124Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46912919136400690Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648696934125336963Mouse
12792979Fbmd2_mfemoral bone mineral density 2, females only (mouse)675026989115026943Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648696934148351498Mouse
1301509Sluc3_msusceptibility to lung cancer 3 (mouse)Not determined6104480321127019938Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648703490125333748Mouse
1301262Gasa3_mgastritis type A susceptibility locus 3 (mouse)Not determined688982366122982564Mouse
1301518Bbaa5_mB.burgdorferi-associated arthritis 5 (mouse)Not determined698483798145881170Mouse
11353842Bmiq4_mbody mass index QTL 4 (mouse)692584287146330736Mouse
1302131Bmd8_mbone mineral density 8 (mouse)Not determined699132089133132228Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645290993128811995Mouse
11251720Ewc4_methanol withdrawal and consumption 4 (mouse)684099474118099474Mouse
1301744Hdlq11_mHDL QTL 11 (mouse)Not determined687480321121480516Mouse
25440480Moaq2_mmodifier of alien QTL 2 (mouse)63050001117476961Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
1301687Mnic2_mmacronutrient intake (mouse)Not determined686783787113521563Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652138693116132228Mouse
1357555Tesq2_mtestis weight QTL 2 (mouse)Not determined696632912146535124Mouse
10043891Tilss4_mTNF-induced lethal shock susceptibility 3 (mouse)Not determined6112246918125333748Mouse
1301244Ichs_mimmediate cutaneous hypersensitivity QTL (mouse)Not determined690772571124772807Mouse
4142416Egq11_mearly growth QTL 11 (mouse)Not determined96632912146535124Mouse
1301923Lith6_mlithogenic gene 6 (mouse)Not determined698694477132694676Mouse
10412207Cypr5_mcytokine production 5 (mouse)Not determined6110815180144815323Mouse
1300704Cia3_mcollagen induced arthritis QTL 3 (mouse)Not determined696324286130324483Mouse
13463481Mcvq14_mmean corpuscular volume QTL 14 (mouse)6111142448145142541Mouse
1357793Pnhdlc1_mplasma non-HDL cholesterol 1 (mouse)Not determined6105541783114345810Mouse
1357806Aaj3_manxiety in A/J 3 (mouse)Not determined6104480321136400690Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673476983134676963Mouse
4141699Ibdq2_minflammatory bowel disease QTL 2 (mouse)Not determined105982366120894102Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678606487121092347Mouse
1301292Cfbw2_mcystic fibrosis body weight 2 (mouse)Not determined694981612128981699Mouse
11040599Lmr4b_mleishmaniasis resistance 4b (mouse)696324286130324483Mouse

Markers in Region
Fsp27  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386113,424,693 - 113,424,851UniSTSGRCm38
MGSCv376113,374,687 - 113,374,845UniSTSGRCm37
Celera6115,251,657 - 115,251,815UniSTS
Cytogenetic Map6E3UniSTS
cM MapUN UniSTS
cM Map6 UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000032416   ⟹   ENSMUSP00000032416
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6113,401,597 - 113,412,717 (-)Ensembl
GRCm38.p6 Ensembl6113,424,636 - 113,435,756 (-)Ensembl
Ensembl Acc Id: ENSMUST00000113089   ⟹   ENSMUSP00000108712
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6113,401,595 - 113,412,721 (-)Ensembl
GRCm38.p6 Ensembl6113,424,634 - 113,435,760 (-)Ensembl
Ensembl Acc Id: ENSMUST00000113091   ⟹   ENSMUSP00000108714
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6113,402,518 - 113,411,725 (-)Ensembl
GRCm38.p6 Ensembl6113,425,557 - 113,434,764 (-)Ensembl
Ensembl Acc Id: ENSMUST00000133348   ⟹   ENSMUSP00000122068
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6113,405,472 - 113,411,574 (-)Ensembl
GRCm38.p6 Ensembl6113,428,511 - 113,434,613 (-)Ensembl
RefSeq Acc Id: NM_001301295   ⟹   NP_001288224
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396113,401,595 - 113,412,721 (-)NCBI
GRCm386113,424,634 - 113,435,760 (-)NCBI
Celera6115,251,598 - 115,262,729 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001372264   ⟹   NP_001359193
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396113,401,595 - 113,411,725 (-)NCBI
GRCm386113,424,634 - 113,434,764 (-)NCBI
Sequence:
RefSeq Acc Id: NM_178373   ⟹   NP_848460
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396113,401,595 - 113,412,721 (-)NCBI
GRCm386113,424,634 - 113,435,760 (-)NCBI
MGSCv376113,374,630 - 113,385,749 (-)RGD
Celera6115,251,598 - 115,262,729 (-)NCBI
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_848460   ⟸   NM_178373
- Peptide Label: isoform 1
- UniProtKB: Q499X5 (UniProtKB/Swiss-Prot),   Q8BNV7 (UniProtKB/Swiss-Prot),   P56198 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001288224   ⟸   NM_001301295
- Peptide Label: isoform 1
- UniProtKB: Q499X5 (UniProtKB/Swiss-Prot),   Q8BNV7 (UniProtKB/Swiss-Prot),   P56198 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001359193   ⟸   NM_001372264
- Peptide Label: isoform 2
- UniProtKB: E9QMZ0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000032416   ⟸   ENSMUST00000032416
Ensembl Acc Id: ENSMUSP00000122068   ⟸   ENSMUST00000133348
Ensembl Acc Id: ENSMUSP00000108712   ⟸   ENSMUST00000113089
Ensembl Acc Id: ENSMUSP00000108714   ⟸   ENSMUST00000113091
Protein Domains
CIDE-N

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P56198-F1-model_v2 AlphaFold P56198 1-239 view protein structure

Promoters
RGD ID:6839080
Promoter ID:MM_KWN:47181
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   Liver
Transcripts:ENSMUST00000113091,   OTTMUST00000055900
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv366113,384,456 - 113,385,657 (-)MPROMDB
RGD ID:6839079
Promoter ID:MM_KWN:47182
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4
Transcripts:ENSMUST00000113089,   OTTMUST00000055898
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv366113,386,059 - 113,386,559 (-)MPROMDB
RGD ID:6890662
Promoter ID:EPDNEW_M8776
Type:initiation region
Name:Cidec_2
Description:Mus musculus cell death-inducing DFFA-like effector c , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8777  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm386113,434,764 - 113,434,824EPDNEW
RGD ID:6890652
Promoter ID:EPDNEW_M8777
Type:single initiation site
Name:Cidec_1
Description:Mus musculus cell death-inducing DFFA-like effector c , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8776  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm386113,435,756 - 113,435,816EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:95585 AgrOrtholog
Ensembl Genes ENSMUSG00000030278 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000032416 ENTREZGENE
  ENSMUST00000032416.11 UniProtKB/Swiss-Prot
  ENSMUST00000113089 ENTREZGENE
  ENSMUST00000113089.8 UniProtKB/Swiss-Prot
  ENSMUST00000113091 ENTREZGENE
  ENSMUST00000113091.8 UniProtKB/TrEMBL
  ENSMUST00000133348.2 UniProtKB/TrEMBL
Gene3D-CATH 3.10.20.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CIDE-N_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:14311 UniProtKB/Swiss-Prot
MGD MGI:95585 ENTREZGENE
NCBI Gene 14311 ENTREZGENE
PANTHER CELL DEATH ACTIVATOR CIDE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CELL DEATH ACTIVATOR CIDE-3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CIDE-N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cidec PhenoGen
PROSITE CIDE_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART CAD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP CAD & PB1 domains UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt CIDEC_MOUSE UniProtKB/Swiss-Prot
  D3Z1A6_MOUSE UniProtKB/TrEMBL
  E9QMZ0 ENTREZGENE, UniProtKB/TrEMBL
  P56198 ENTREZGENE
  Q499X5 ENTREZGENE
  Q8BNV7 ENTREZGENE
UniProt Secondary Q499X5 UniProtKB/Swiss-Prot
  Q8BNV7 UniProtKB/Swiss-Prot