Trim66 (tripartite motif-containing 66) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Trim66 (tripartite motif-containing 66) Mus musculus
Analyze
Symbol: Trim66
Name: tripartite motif-containing 66
RGD ID: 1557244
MGI Page MGI
Description: Enables chromatin binding activity and identical protein binding activity. Acts upstream of or within negative regulation of DNA-templated transcription. Located in chromocenter and nucleus. Is expressed in olfactory epithelium. Orthologous to human TRIM66 (tripartite motif containing 66).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: D7H11orf; D7H11orf29; KIAA0298; KIAA0298 hypothetical protein (human); Kiaa0298-hp; Tif1; Tif1d; TIF1delta; transcriptional intermediary factor 1 delta; tripartite motif-containing protein 66
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397109,048,208 - 109,115,948 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7109,048,213 - 109,107,341 (-)EnsemblGRCm39 Ensembl
GRCm387109,449,001 - 109,516,759 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7109,449,006 - 109,508,134 (-)EnsemblGRCm38mm10GRCm38
MGSCv377116,592,515 - 116,651,648 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367109,240,180 - 109,284,915 (-)NCBIMGSCv36mm8
Celera7109,421,974 - 109,482,059 (-)NCBICelera
Cytogenetic Map7E3NCBI
cM Map757.21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chromatin  (IBA)
chromocenter  (IDA)
nucleus  (IDA,ISO)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Mouse MP Annotation Import Pipeline RGD automated import pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11528127   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15322135   PMID:15368895   PMID:15618518   PMID:16141072  
PMID:16141073   PMID:21267068   PMID:21677750   PMID:21873635   PMID:23912999   PMID:24105743   PMID:30973865   PMID:38355793   PMID:38719749  


Genomics

Comparative Map Data
Trim66
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397109,048,208 - 109,115,948 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7109,048,213 - 109,107,341 (-)EnsemblGRCm39 Ensembl
GRCm387109,449,001 - 109,516,759 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7109,449,006 - 109,508,134 (-)EnsemblGRCm38mm10GRCm38
MGSCv377116,592,515 - 116,651,648 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367109,240,180 - 109,284,915 (-)NCBIMGSCv36mm8
Celera7109,421,974 - 109,482,059 (-)NCBICelera
Cytogenetic Map7E3NCBI
cM Map757.21NCBI
TRIM66
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38118,612,040 - 8,683,231 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl118,612,037 - 8,682,694 (-)EnsemblGRCh38hg38GRCh38
GRCh37118,633,587 - 8,704,778 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36118,593,069 - 8,650,397 (-)NCBINCBI36Build 36hg18NCBI36
Celera118,751,219 - 8,798,014 (-)NCBICelera
Cytogenetic Map11p15.4NCBI
HuRef118,301,197 - 8,348,377 (-)NCBIHuRef
CHM1_1118,632,498 - 8,679,276 (-)NCBICHM1_1
T2T-CHM13v2.0118,693,787 - 8,764,985 (-)NCBIT2T-CHM13v2.0
Trim66
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81172,903,771 - 172,974,475 (-)NCBIGRCr8
mRatBN7.21163,468,944 - 163,539,633 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1163,470,350 - 163,537,185 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1171,812,521 - 171,865,327 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01178,998,572 - 179,051,372 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01171,681,164 - 171,734,001 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01174,062,176 - 174,132,732 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1174,066,911 - 174,119,815 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01181,050,864 - 181,118,794 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41167,049,540 - 167,112,676 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1161,375,583 - 161,428,378 (-)NCBICelera
Cytogenetic Map1q33NCBI
Trim66
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541424,406,205 - 24,459,601 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541424,405,986 - 24,459,729 (-)NCBIChiLan1.0ChiLan1.0
TRIM66
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2911,042,863 - 11,113,387 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11110,996,886 - 11,048,218 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0118,739,892 - 8,807,121 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1118,482,889 - 8,549,669 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl118,485,319 - 8,519,067 (-)Ensemblpanpan1.1panPan2
TRIM66
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12132,037,874 - 32,097,362 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2132,044,841 - 32,097,357 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2131,605,638 - 31,665,919 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02132,910,669 - 32,970,942 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2132,918,427 - 32,965,302 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12132,179,916 - 32,240,153 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02132,348,328 - 32,406,280 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02132,642,146 - 32,699,825 (-)NCBIUU_Cfam_GSD_1.0
Trim66
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494753,315,008 - 53,374,719 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365289,358,950 - 9,529,842 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365289,358,976 - 9,410,425 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRIM66
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9738,551 - 764,472 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19711,571 - 769,799 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29904,459 - 936,367 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TRIM66
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1156,118,792 - 56,180,748 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666038153,814,800 - 153,872,013 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trim66
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624766779,289 - 833,434 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624766772,565 - 833,372 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Trim66
3696 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:3019
Count of miRNA genes:821
Interacting mature miRNAs:1109
Transcripts:ENSMUST00000033339, ENSMUST00000106739, ENSMUST00000106741, ENSMUST00000137704
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357460Vtbt4_mvertebral trabecular bone trait 4 (mouse)Not determined7101693381135693530Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
27226781Tibl3_mtibia length 3, 5 week (mouse)774849748122199223Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
1301781Capsq3_mcapsaicin sensitivity related QTL 3 (mouse)Not determined787143137119485380Mouse
14746989Manh62_mmandible shape 62 (mouse)775742528109742528Mouse
11039524Tbbr3_mTrypanosoma brucei brucei response 3 (mouse)7100750722134750843Mouse
27226769Tibl12_mtibia length 12, 10 week (mouse)787249208126499172Mouse
25394573Skmw62_mskeletal muscle weight 62, gastroc (mouse)7106893715110612309Mouse
10043926Bw1n_mbody weight 1 in NSY (mouse)Not determined745161966118693530Mouse
27226765Tibl18_mtibia length 18, 16 week (mouse)781849748126499172Mouse
27226763Feml20_mfemur length 20, 16 week (mouse)785049208124199223Mouse
4142500Morq1_mmodifier of Rs1 QTL 1 (mouse)Not determined80551681114551791Mouse
1301647Elpt_melevated leptin (mouse)Not determined786500186120500329Mouse
13208555Lgth10_mbody length 10 (mouse)751649748125599172Mouse
26884408Bzwq13_mbi-zygomatic width QTL 13, 16 week (mouse)761749748121399223Mouse
1301937Skull10_mskull morphology 10 (mouse)Not determined791482996125483156Mouse
1300528Ssial3_msusceptibility to sialadenitis 3 (mouse)Not determined793391848127392041Mouse
5491192Mobq1_mmultigenic obesity QTL 1 (mouse)Not determined7105250663139250811Mouse
1301566Adip3_madiposity 3 (mouse)Not determined775394215109394346Mouse
26884398Humsd6_mhumerus midshaft diameter 6, 16 week (mouse)778649748136901729Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
27226790Feml15_mfemur length 15, 10 week (mouse)787249208126499172Mouse
13524852Asrq7a_macoustic startle response 7a (mouse)7105350008139350008Mouse
13524850Asrq7_macoustic startle response 7 (mouse)798394974132394974Mouse
1302062Stheal6_msoft tissue heal 6 (mouse)Not determined787043932121044066Mouse
4141056Lskcn2_mLSK cell number 2 (mouse)Not determined108482996118693530Mouse
26884440Sklq4_mskull length QTL 4, 5 week (mouse)765249748126499172Mouse
27095903Scvln10_msacral vertebrae length 2, 10 week (mouse)781449748126499172Mouse
27226715Metcl3_mmetatarsal-calcaneal length 3, 5 week (mouse)767849748119499223Mouse
26884444Sklq8_mskull length QTL 8, 10 week (mouse)767849748124199223Mouse
25823170Hrsq7_mhost response to SARS QTL 7, log titer (mouse)754819589116822815Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
10412110Cctq1_mcentral corneal thickness QTL 1 (mouse)Not determined780551681114551791Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
1301447Fembm3_mfemoral bone morphometry 3 (mouse)Not determined7100993261134993342Mouse
10412104Tons2_mtongue size 2 (mouse)Not determined799837716133837716Mouse
1301188Heal6_mwound healing/regeneration 6 (mouse)Not determined787043932121044066Mouse
4142312Nilac4_mnicotine induced locomotor activity 4 (mouse)Not determined7102485219136485380Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773149748143153737Mouse
1301105Cfld4_mcystic fibrosis lung disease 4 (mouse)Not determined7101693381135693530Mouse
1300721Cfbw3_mcystic fibrosis body weight 3 (mouse)Not determined7101693381135693530Mouse
13524524Bodwtq6_mbody wweight QTL 6 (mouse)7107245693113055693Mouse
27226745Metcl9_mmetatarsal-calcaneal length 9, 10 week (mouse)774849748122199223Mouse
27095930Ulnl10_mulna length 10, 16 week (mouse)780849748126699172Mouse
27095923Pglq3_mpelvic girdle length QTL 3, 5 week (mouse)781249748124199223Mouse
27095916Scvln15_msacral vertebrae length 2, 16 week (mouse)761749748123699223Mouse
1357664Nba3_mNew Zealand Black autoimmunity 3 (mouse)Not determined791482996125483156Mouse
1301478Eae26_msusceptibility to experimental allergic encephalomyelitis 26 (mouse)Not determined798164922132165010Mouse
26884451Sklq14_mskull length QTL 14, 16 week (mouse)767849748124999172Mouse
27095910Pglq13_mpelvic girdle length QTL 13, 16 week (mouse)773049748125699172Mouse
13463473Hbbcq4_mhemoglobin concentration QTL 4 (mouse)787043932121044066Mouse
25394559Skmw63_mskeletal muscle weight 63, TA (mouse)7108791458110612309Mouse
27095907Scvln4_msacral vertebrae length 2, 5 week (mouse)769949748120499223Mouse
1301997Cia7_mcollagen induced arthritis QTL 7 (mouse)Not determined785365595112533819Mouse
25394557Skmw64_mskeletal muscle weight 64, soleus (mouse)7108715780114592736Mouse
35673311Ari6_mantibody response to influenza 6, day 15, IgG2b (mouse)7108699207115099235Mouse
25394556Skmw65_mskeletal muscle weight 65, EDL (mouse)7109059337110612309Mouse

Markers in Region
D7Mill8  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387109,463,515 - 109,463,729UniSTSGRCm38
MGSCv377116,607,029 - 116,607,243UniSTSGRCm37
Celera7109,436,484 - 109,436,698UniSTS
Cytogenetic Map7E3UniSTS
cM Map751.55UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001170912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001170913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_181853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006507959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006507960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006507961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006507962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011241835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC124457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ307670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK172929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY572454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY572455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC138032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000033339   ⟹   ENSMUSP00000033339
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7109,052,983 - 109,107,341 (-)Ensembl
GRCm38.p6 Ensembl7109,453,776 - 109,508,134 (-)Ensembl
Ensembl Acc Id: ENSMUST00000106739   ⟹   ENSMUSP00000102350
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7109,048,213 - 109,092,945 (-)Ensembl
GRCm38.p6 Ensembl7109,449,006 - 109,493,738 (-)Ensembl
Ensembl Acc Id: ENSMUST00000106741   ⟹   ENSMUSP00000102352
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7109,052,983 - 109,107,341 (-)Ensembl
GRCm38.p6 Ensembl7109,453,776 - 109,508,134 (-)Ensembl
Ensembl Acc Id: ENSMUST00000137704
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7109,068,918 - 109,074,341 (-)Ensembl
GRCm38.p6 Ensembl7109,469,711 - 109,475,134 (-)Ensembl
RefSeq Acc Id: NM_001170912   ⟹   NP_001164383
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397109,048,208 - 109,107,341 (-)NCBI
GRCm387109,449,001 - 109,508,134 (-)NCBI
MGSCv377116,592,515 - 116,651,648 (-)RGD
Celera7109,421,974 - 109,482,059 (-)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001170913   ⟹   NP_001164384
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397109,048,208 - 109,092,945 (-)NCBI
GRCm387109,449,001 - 109,493,738 (-)NCBI
MGSCv377116,592,515 - 116,651,648 (-)RGD
Celera7109,421,974 - 109,482,059 (-)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_181853   ⟹   NP_862901
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397109,048,208 - 109,107,341 (-)NCBI
GRCm387109,449,001 - 109,508,134 (-)NCBI
MGSCv377116,592,515 - 116,651,648 (-)RGD
Celera7109,421,974 - 109,482,059 (-)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006507959   ⟹   XP_006508022
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397109,048,208 - 109,093,237 (-)NCBI
GRCm387109,449,001 - 109,494,030 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006507960   ⟹   XP_006508023
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397109,048,215 - 109,093,401 (-)NCBI
GRCm387109,449,001 - 109,494,192 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006507961   ⟹   XP_006508024
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397109,048,215 - 109,115,948 (-)NCBI
GRCm387109,449,001 - 109,516,759 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006507962   ⟹   XP_006508025
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397109,048,215 - 109,092,903 (-)NCBI
GRCm387109,449,001 - 109,494,004 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011241835   ⟹   XP_011240137
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397109,048,215 - 109,115,948 (-)NCBI
GRCm387109,449,001 - 109,516,759 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036153179   ⟹   XP_036009072
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397109,048,208 - 109,093,210 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036153180   ⟹   XP_036009073
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397109,066,036 - 109,093,237 (-)NCBI
Sequence:
RefSeq Acc Id: NP_862901   ⟸   NM_181853
- Peptide Label: isoform 2
- UniProtKB: B2RQQ4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001164383   ⟸   NM_001170912
- Peptide Label: isoform 1
- UniProtKB: Q924W6 (UniProtKB/Swiss-Prot),   Q5SEK5 (UniProtKB/Swiss-Prot),   Q5SEK4 (UniProtKB/Swiss-Prot),   E9QLR8 (UniProtKB/Swiss-Prot),   B2RQQ4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001164384   ⟸   NM_001170913
- Peptide Label: isoform 3
- UniProtKB: E9PZP2 (UniProtKB/TrEMBL),   Q3UH62 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006508024   ⟸   XM_006507961
- Peptide Label: isoform X1
- UniProtKB: B2RQQ4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006508023   ⟸   XM_006507960
- Peptide Label: isoform X1
- UniProtKB: B2RQQ4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006508022   ⟸   XM_006507959
- Peptide Label: isoform X1
- UniProtKB: B2RQQ4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006508025   ⟸   XM_006507962
- Peptide Label: isoform X1
- UniProtKB: B2RQQ4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011240137   ⟸   XM_011241835
- Peptide Label: isoform X1
- UniProtKB: B2RQQ4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000033339   ⟸   ENSMUST00000033339
Ensembl Acc Id: ENSMUSP00000102350   ⟸   ENSMUST00000106739
Ensembl Acc Id: ENSMUSP00000102352   ⟸   ENSMUST00000106741
RefSeq Acc Id: XP_036009072   ⟸   XM_036153179
- Peptide Label: isoform X2
- UniProtKB: B2RQQ4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036009073   ⟸   XM_036153180
- Peptide Label: isoform X3
Protein Domains
B box-type   Bromo   PHD-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q924W6-F1-model_v2 AlphaFold Q924W6 1-1242 view protein structure

Promoters
RGD ID:8665255
Promoter ID:EPDNEW_M10624
Type:single initiation site
Name:Trim66_1
Description:Mus musculus tripartite motif-containing 66 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm387109,493,705 - 109,493,765EPDNEW
RGD ID:6842277
Promoter ID:MM_KWN:52243
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:AK016962_4933428C20RIK,   ENSMUST00000106740,   NM_001170913
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367116,637,081 - 116,637,581 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2152406 AgrOrtholog
Ensembl Genes ENSMUSG00000031026 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000033339 ENTREZGENE
  ENSMUST00000033339.8 UniProtKB/Swiss-Prot
  ENSMUST00000106739 ENTREZGENE
  ENSMUST00000106739.8 UniProtKB/TrEMBL
  ENSMUST00000106741 ENTREZGENE
  ENSMUST00000106741.10 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.920.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Bbox_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Bromodomain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Bromodomain-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Trim66 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Zinc_finger_PHD-type_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_B-box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_PHD-finger UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING UniProtKB/Swiss-Prot
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/Swiss-Prot
KEGG Report mmu:330627 UniProtKB/Swiss-Prot
MGD MGI:2152406 ENTREZGENE
NCBI Gene Trim66 ENTREZGENE
PANTHER PTHR45915:SF7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRANSCRIPTION INTERMEDIARY FACTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Bromodomain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-B_box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Trim66 PhenoGen
PRINTS BROMODOMAIN UniProtKB/TrEMBL
PROSITE BROMODOMAIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_BBOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_PHD_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_PHD_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_RING_1 UniProtKB/Swiss-Prot
  ZF_RING_2 UniProtKB/Swiss-Prot
SMART BBC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BBOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BROMO UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RING UniProtKB/Swiss-Prot
Superfamily-SCOP B-box zinc-binding domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RING/U-box UniProtKB/Swiss-Prot
  SSF47370 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF57903 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B2RQQ4 ENTREZGENE, UniProtKB/TrEMBL
  E9PZP2 ENTREZGENE, UniProtKB/TrEMBL
  E9QLR8 ENTREZGENE
  Q3UH62 ENTREZGENE, UniProtKB/TrEMBL
  Q5SEK4 ENTREZGENE
  Q5SEK5 ENTREZGENE
  Q6A089_MOUSE UniProtKB/TrEMBL
  Q924W6 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary E9QKN7 UniProtKB/Swiss-Prot
  E9QLR8 UniProtKB/Swiss-Prot
  Q5SEK4 UniProtKB/Swiss-Prot
  Q5SEK5 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-08-21 Trim66  tripartite motif-containing 66  Kiaa0298-hp  KIAA0298 hypothetical protein (human)  Symbol and/or name change 5135510 APPROVED
2024-08-21 Kiaa0298-hp  KIAA0298 hypothetical protein (human)  Trim66  tripartite motif-containing 66  Symbol and/or name change 5135510 APPROVED