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Gene: Tmem120a (transmembrane protein 120A) Mus musculus

Analyze

Symbol:

Tmem120a

Name:

transmembrane protein 120A

RGD ID:

1557241

MGI Page

MGI

Description:

Enables monoatomic ion channel activity. Involved in several processes, including detection of mechanical stimulus involved in sensory perception of pain; fat cell differentiation; and protein complex oligomerization. Located in plasma membrane. Is expressed in central nervous system and ganglia. Orthologous to human TMEM120A (transmembrane protein 120A).

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

2010310D06Rik; ion channel TACAN; Tmp; Tmpit; transmembrane protein induced by tumor necrosis factor alpha

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TMEM120A (transmembrane protein 120A)	HGNC	Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, Panther, PhylomeDB
Rattus norvegicus (Norway rat):	Tmem120a (transmembrane protein 120A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tmem120a (transmembrane protein 120A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TMEM120A (transmembrane protein 120A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TMEM120A (transmembrane protein 120A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tmem120a (transmembrane protein 120A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TMEM120A (transmembrane protein 120A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TMEM120A (transmembrane protein 120A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tmem120a (transmembrane protein 120A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	TMEM120B (transmembrane protein 120B)	HGNC	OrthoDB
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Tmem120a (transmembrane protein 120A)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	TMEM120A (transmembrane protein 120A)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	zgc:103681	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|ZFIN)
Danio rerio (zebrafish):	tmem120a (transmembrane protein 120A)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid\|ZFIN)
Caenorhabditis elegans (roundworm):	M01G5.3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG32795	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	tmem120a	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	135,764,344 - 135,773,026 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	135,764,339 - 135,773,302 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	135,735,490 - 135,744,172 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	135,735,485 - 135,744,448 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	136,211,360 - 136,220,042 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	136,020,117 - 136,028,799 (-)	NCBI		MGSCv36	mm8
Celera	5	132,742,669 - 132,751,351 (-)	NCBI		Celera
Cytogenetic Map	5	G2	NCBI
cM Map	5	75.38	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Chromosome 7q11.23 Deletion Syndrome, Distal, 1.2-MB (ISO)

cytochrome P450 oxidoreductase deficiency (ISO)

pleomorphic xanthoastrocytoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-alpha-phellandrene (ISO)

(1->4)-beta-D-glucan (EXP)

1,2-dimethylhydrazine (EXP)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxypropanoic acid (ISO)

3,4-methylenedioxymethamphetamine (EXP)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (ISO)

acetamide (ISO)

aflatoxin B1 (ISO)

alpha-phellandrene (ISO)

amitrole (ISO)

aristolochic acid A (ISO)

arsenite(3-) (EXP)

benzene (ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

carbon nanotube (EXP)

cisplatin (ISO)

clofibrate (ISO)

cyclosporin A (ISO)

DDE (ISO)

dibutyl phthalate (ISO)

diethylstilbestrol (ISO)

dioxygen (EXP)

dorsomorphin (ISO)

ethanol (EXP)

fenofibrate (ISO)

flutamide (ISO)

folic acid (EXP)

fulvestrant (ISO)

furan (ISO)

genistein (ISO)

glycidyl methacrylate (ISO)

inulin (EXP)

methimazole (ISO)

N-nitrosomorpholine (ISO)

paracetamol (EXP,ISO)

paraquat (ISO)

perfluorooctane-1-sulfonic acid (EXP)

perfluorooctanoic acid (ISO)

phenylmercury acetate (ISO)

pirinixic acid (EXP,ISO)

pregnenolone 16alpha-carbonitrile (ISO)

rac-lactic acid (ISO)

rotenone (ISO)

SB 431542 (ISO)

silicon dioxide (EXP)

sunitinib (ISO)

temozolomide (ISO)

tetrachloromethane (EXP)

thapsigargin (ISO)

thioacetamide (ISO)

titanium dioxide (EXP)

trichloroethene (ISO)

triphenyl phosphate (ISO)

troglitazone (EXP)

tunicamycin (ISO)

valproic acid (ISO)

vinclozolin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

antiviral innate immune response (IMP)

detection of mechanical stimulus involved in sensory perception of pain (IDA)

fat cell differentiation (IBA,IMP,ISO)

monoatomic ion transmembrane transport (IDA)

protein heterooligomerization (IDA,ISO)

protein homooligomerization (IDA,ISO)

Cellular Component

endoplasmic reticulum (ISO)

membrane (IBA)

nuclear inner membrane (IDA)

plasma membrane (IDA)

Molecular Function

coenzyme A binding (IDA)

monoatomic ion channel activity (IDA,ISO)

protein binding (ISO)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal nocifensive behavior (IAGP)

increased mechanical nociceptive threshold (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	MGDs mouse GO annotations	MGD data from the GO Consortium
2.	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
5.	Database resources of the National Center for Biotechnology Information.	Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.

Additional References at PubMed

PMID:8889548	PMID:10349636	PMID:10922068	PMID:11042159	PMID:11076861	PMID:11217851	PMID:15782199	PMID:16141072	PMID:16141073	PMID:20091084	PMID:21267068	PMID:21677750
PMID:21873635	PMID:26024229	PMID:27113764	PMID:32084332	PMID:32554809	PMID:34374644	PMID:34409941	PMID:35013224	PMID:35027552	PMID:35819364

Genomics

Comparative Map Data

Tmem120a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	135,764,344 - 135,773,026 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	135,764,339 - 135,773,302 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	135,735,490 - 135,744,172 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	135,735,485 - 135,744,448 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	136,211,360 - 136,220,042 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	136,020,117 - 136,028,799 (-)	NCBI		MGSCv36	mm8
Celera	5	132,742,669 - 132,751,351 (-)	NCBI		Celera
Cytogenetic Map	5	G2	NCBI
cM Map	5	75.38	NCBI

TMEM120A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	75,986,831 - 75,994,595 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	75,986,831 - 75,994,656 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	75,616,149 - 75,623,913 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	75,454,243 - 75,461,889 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	7	70,484,699 - 70,492,531 (-)	NCBI		Celera
Cytogenetic Map	7	q11.23	NCBI
HuRef	7	70,702,967 - 70,710,827 (-)	NCBI		HuRef
CHM1_1	7	75,546,225 - 75,554,037 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	7	77,274,487 - 77,282,162 (-)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	74,949,219 - 74,957,056 (-)	NCBI

Tmem120a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	26,578,859 - 26,587,524 (+)	NCBI		GRCr8
mRatBN7.2	12	20,942,243 - 20,950,908 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	20,942,439 - 20,990,316 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	22,083,966 - 22,092,640 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	22,696,400 - 22,705,078 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	21,762,859 - 21,771,533 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	23,989,596 - 23,998,257 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	23,989,596 - 23,998,254 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	25,986,848 - 25,995,509 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	22,069,814 - 22,078,475 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	12	22,057,077 - 22,065,739 (+)	NCBI
Celera	12	22,704,874 - 22,713,535 (+)	NCBI		Celera
Cytogenetic Map	12	q12	NCBI

Tmem120a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955456	14,747,621 - 14,754,270 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955456	14,748,666 - 14,754,270 (-)	NCBI	ChiLan1.0	ChiLan1.0

TMEM120A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	93,960,294 - 93,968,798 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	142,224,932 - 142,233,436 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	68,026,666 - 68,034,896 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	82,437,650 - 82,444,882 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	82,437,650 - 82,444,882 (-)	Ensembl	panpan1.1		panPan2

TMEM120A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	7,316,257 - 7,321,992 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	7,316,477 - 7,389,842 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	9,013,030 - 9,019,258 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	7,137,088 - 7,143,313 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	7,137,263 - 7,210,023 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	7,106,460 - 7,112,688 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	7,069,926 - 7,076,153 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	7,233,166 - 7,239,394 (-)	NCBI		UU_Cfam_GSD_1.0

Tmem120a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	131,760,568 - 131,766,176 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936543	2,270,609 - 2,275,679 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936543	2,270,444 - 2,275,999 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TMEM120A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	10,206,630 - 10,212,610 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	10,206,581 - 10,212,612 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

TMEM120A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	28	10,230,961 - 10,238,325 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	28	10,231,152 - 10,238,226 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666070	6,183,818 - 6,191,437 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tmem120a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624740	14,790,876 - 14,796,635 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624740	14,790,876 - 14,796,673 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	768
Count of miRNA genes:	455
Interacting mature miRNAs:	525
Transcripts:	ENSMUST00000043378, ENSMUST00000127156, ENSMUST00000141779, ENSMUST00000153399
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
27226719	Tibw6_m	tibia width 6, proximal, 16 week (mouse)					5	72857343	139985755	Mouse
1301715	Elmaz2_m	elevated maze behavior 2 (mouse)			Not determined		5	125178229	141700466	Mouse
10412191	Bbaa24_m	B.burgdorferi-associated arthritis 24 (mouse)			Not determined		5	119945037	141700466	Mouse
13464143	Bbaa2b_m	B.burgdorferi-associated arthritis 2b (mouse)					5	133052969	140709801	Mouse
11528552	Scram1_m	spinal cord resistance to astrocytoma modifier 1 (mouse)					5	121455402	151758149	Mouse
1300827	Cora1_m	correlation in cytokine production 1 (mouse)			Not determined		5	115156883	149157015	Mouse
14746986	Manh58_m	mandible shape 58 (mouse)					5	102446283	136446283	Mouse
10412239	Alpq7_m	alcohol preference QTL 7 (mouse)			Not determined		5	104705939	138705939	Mouse
12880406	Jcdq2_m	joint cartilage degeneration QTL 2 (mouse)					5	129787831	151758149	Mouse
4141218	Ath24_m	atherosclerosis 24 (mouse)			Not determined			129520084	151758149	Mouse
1301363	Pbwg13_m	postnatal body weight growth 13 (mouse)			Not determined		5	125133457	151758149	Mouse
1301362	Prnr1_m	prion resistance 1 (mouse)			Not determined		5	89418876	146787935	Mouse
1300913	Bwefm_m	body weight females and males day 10 (mouse)			Not determined		5	109439348	143439459	Mouse
4141081	Nidd7k_m	Nidd7 on KK-A (mouse)			Not determined			119945037	149347326	Mouse
1301624	Aevm2_m	autoimmune extremity vasculitis in MRL mice 2 (mouse)			Not determined		5	101863832	135864028	Mouse
10043890	Trigq4_m	triglyceride QTL 4 (mouse)			Not determined		5	107906299	141906412	Mouse
1302079	Lbw3_m	lupus NZB x NZW 3 (mouse)			Not determined		5	124700335	151758149	Mouse
11532736	Sluc33b_m	susceptibility to lung cancer 33b (mouse)					5	102945037	136945196	Mouse
1301986	Bpq4_m	blood pressure QTL 4 (mouse)			Not determined		5	121555236	151758149	Mouse
1301857	Bglq14_m	body growth late QTL 14 (mouse)			Not determined		5	118948964	151758149	Mouse
10412202	Bbaa26_m	B.burgdorferi-associated arthritis 26 (mouse)			Not determined		5	104583688	138555455	Mouse
1301543	Hypch_m	hypercholesterolemia (mouse)			Not determined		5	109238624	139118905	Mouse
4142473	Chlq11_m	circulating hormone level QTL 11 (mouse)			Not determined		5	107906299	141906412	Mouse
13464251	Ahl21_m	age related hearing loss, early onset 21 (mouse)					5	109167240	143167381	Mouse
11341716	Rvfs3_m	Rift Valley fever susceptibility 3 (mouse)					5	26441234	138455402	Mouse
1301226	Bbaa2_m	B.burgdorferi-associated arthritis 2 (mouse)			Not determined		5	115156883	149157015	Mouse
10412197	Bbaa25_m	B.burgdorferi-associated arthritis 25 (mouse)			Not determined		5	109167240	143167381	Mouse
1301102	Cia14_m	collagen induced arthritis 14 (mouse)			Not determined		5	113320385	138555455	Mouse
11049557	Lmr26_m	leishmaniasis resistance 26 (mouse)					5	133925558	151758149	Mouse
13464243	Ahl20_m	age related hearing loss, early onset 20 (mouse)					5	107906299	141906412	Mouse

Markers in Region

D17571

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	5	135,735,000 - 135,735,128	UniSTS	GRCm38
MGSCv37	5	136,210,870 - 136,210,998	UniSTS	GRCm37
Celera	5	132,742,179 - 132,742,307	UniSTS
Cytogenetic Map	5	G2	UniSTS
cM Map	5	75.0	UniSTS
Whitehead/MRC_RH	5	1642.87	UniSTS
Whitehead/MRC_RH	5	1643.61	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_172541	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC083948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK028119	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK050367	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK187000	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK209822	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK211918	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK213264	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK215385	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK216921	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK217162	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC046757	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466529	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000043378 ⟹ ENSMUSP00000045252

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	135,764,339 - 135,773,302 (-)	Ensembl
GRCm38.p6 Ensembl	5	135,735,485 - 135,744,448 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000127156

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	135,765,109 - 135,771,253 (-)	Ensembl
GRCm38.p6 Ensembl	5	135,736,255 - 135,742,399 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000141779

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	135,764,358 - 135,765,444 (-)	Ensembl
GRCm38.p6 Ensembl	5	135,735,504 - 135,736,590 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000153399 ⟹ ENSMUSP00000120834

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	135,766,062 - 135,773,062 (-)	Ensembl
GRCm38.p6 Ensembl	5	135,737,208 - 135,744,208 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000199952

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	135,764,392 - 135,766,090 (-)	Ensembl
GRCm38.p6 Ensembl	5	135,735,538 - 135,737,236 (-)	Ensembl

RefSeq Acc Id:

NM_172541 ⟹ NP_766129

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	5	135,764,344 - 135,773,026 (-)	NCBI
GRCm38	5	135,735,490 - 135,744,172 (-)	ENTREZGENE
MGSCv37	5	136,211,360 - 136,220,042 (-)	RGD
Celera	5	132,742,669 - 132,751,351 (-)	RGD
cM Map	5		ENTREZGENE

Sequence:

show sequence

CTCCCCACTCGCGGCTCTCCGCGGCCAGTGGCGTGGACAAAGACATGCAGTCCCCGCCCCCGGA
CCCGCTGGGCGACTGCCTGCGCAACTGGGAGGATCTGCAGCAGGACTTCCAAGGTATCCAGGAA
ACACATCGCCTGTATCGCCTCAAGCTAGAGGAGCTGACCAAACTCCAGGCCAACTGTACAAACT
CCATCACACGGCAGAAGAAGCGGCTCCAGGAGCTGGCCTTGGTGCTGAAAAAATGCAGACCCTC
TCTCCCATCCGAGTCCATGGAGGCTGCACAGGAGCTGGAAAACCAGATGAAAGAGCGCCAAGGC
CTCTTCTTCGACATGGAAGCCTATCTGCCTAAGAAGAACGGGTTGTACCTGAGTCTGGTTCTGG
GGAATGTCAACGTGACACTTCTGAGCAAGCAGGCTAAGTTCGCTTACAAAGACGAGTACGAGAA
ATTCAAGCTCTACCTCACCATCATCCTCATCGTCATCTCCTTCACCTGCCGCTTCCTGCTCAAC
TCCAGGGTGACGGACGCAGCCTTCAACTTCCTGCTGGTCTGGTATTATTGCACGCTGACCATCC
GGGAGAGCATCCTCATCAACAATGGTTCCAGGATCAAAGGCTGGTGGGTTTTCCATCATTATGT
GTCCACATTCCTGTCAGGAGTCATGCTGACCTGGCCAGATGGACTCATGTACCAGAAGTTCCGG
AACCAGTTCCTGTCTTTCTCCATGTACCAGAGCTTTGTGCAATTCCTGCAGTATTACTATCAGA
GCGGGTGCCTGTACCGCCTGCGAGCCCTGGGCGAGCGCCATACGATGGATCTCACCGTAGAGGG
CTTTCAGTCTTGGATGTGGAGAGGCCTCACCTTCCTGCTTCCGTTCCTCTTCTTTGGACACTTC
TGGCAACTCTTCAATGCGCTGACATTGTTTAACTTGGCCCGGGACCCGGAGTGCAAGGAGTGGC
AGGTGCTCATGTGCGGCTTCCCCTTCCTCCTCCTCTTCCTCGGCAATTTCTTCACCACCCTGCG
AGTGGTGCATCAGAAGTTCCACAGCCAGCAGCACGGGAACAAGAAGGACTGAGCTAGATCTGAT
GCCAGCCCCAAAGGGGCTTTTTGACCTGTGTGCCAGGTGGGGCAGCAGGTTGGGGTTACCCCTT
GTGTAGGGGGTTCCCTTCTGTGCCCCCTGAGCTTTGTGGGCTCTGTGGGCCCTGAGGAAGGCCT
GGGCCTGGAGCCCAGCTTGCAGGATTCGGGCTCTAGGCCTCAATAAAGGAAGAGAGGCATGG

hide sequence

Protein Sequences


Protein RefSeqs	NP_766129	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH46757	(Get FASTA)	NCBI Sequence Viewer
	BAC25759	(Get FASTA)	NCBI Sequence Viewer
	BAC34212	(Get FASTA)	NCBI Sequence Viewer
	EDL19355	(Get FASTA)	NCBI Sequence Viewer
	EDL19356	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000045252
	ENSMUSP00000045252.3
	ENSMUSP00000120834.2
GenBank Protein	Q8C1E7	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_766129 ⟸ NM_172541

- UniProtKB:

Q8BWP7 (UniProtKB/Swiss-Prot), Q8C1E7 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MQSPPPDPLGDCLRNWEDLQQDFQGIQETHRLYRLKLEELTKLQANCTNSITRQKKRLQELALV
LKKCRPSLPSESMEAAQELENQMKERQGLFFDMEAYLPKKNGLYLSLVLGNVNVTLLSKQAKFA
YKDEYEKFKLYLTIILIVISFTCRFLLNSRVTDAAFNFLLVWYYCTLTIRESILINNGSRIKGW
WVFHHYVSTFLSGVMLTWPDGLMYQKFRNQFLSFSMYQSFVQFLQYYYQSGCLYRLRALGERHT
MDLTVEGFQSWMWRGLTFLLPFLFFGHFWQLFNALTLFNLARDPECKEWQVLMCGFPFLLLFLG
NFFTTLRVVHQKFHSQQHGNKKD

hide sequence

Ensembl Acc Id:

ENSMUSP00000120834 ⟸ ENSMUST00000153399

Ensembl Acc Id:

ENSMUSP00000045252 ⟸ ENSMUST00000043378

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q8C1E7-F1-model_v2	AlphaFold	Q8C1E7	1-343	view protein structure

Promoters

RGD ID:

6888332

Promoter ID:

EPDNEW_M7617

Type:

initiation region

Name:

Tmem120a_1

Description:

Mus musculus transmembrane protein 120A , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	5	135,744,251 - 135,744,311	EPDNEW

RGD ID:

6838508

Promoter ID:

MM_KWN:44373

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, BoneMarrow_0Hour, BoneMarrow_4Hour, Brain, Kidney, Liver, Lung, MEF_B6

Transcripts:

OTTMUST00000073460

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	5	136,212,031 - 136,213,387 (-)	MPROMDB

RGD ID:

6838507

Promoter ID:

MM_KWN:44374

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, 3T3L1_Day6

Transcripts:

OTTMUST00000073459

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	5	136,218,591 - 136,219,172 (-)	MPROMDB

RGD ID:

6838501

Promoter ID:

MM_KWN:44375

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, 3T3L1_Day6, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

OTTMUST00000073443, OTTMUST00000073458

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	5	136,219,849 - 136,220,349 (-)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:2686991	AgrOrtholog
Ensembl Genes	ENSMUSG00000039886	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000043378	ENTREZGENE
	ENSMUST00000043378.9	UniProtKB/Swiss-Prot
	ENSMUST00000153399.2	UniProtKB/TrEMBL
InterPro	TMPIT	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:215210	UniProtKB/Swiss-Prot
MGD	MGI:2686991	ENTREZGENE
NCBI Gene	215210	ENTREZGENE
PANTHER	ION CHANNEL TACAN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR21433	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	TMPIT	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Tmem120a	PhenoGen
UniProt	D3Z0U3_MOUSE	UniProtKB/TrEMBL
	Q8BWP7	ENTREZGENE
	Q8C1E7	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	Q8BWP7	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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