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Gene: Far2 (fatty acyl CoA reductase 2) Mus musculus

Analyze

Symbol:

Far2

Name:

fatty acyl CoA reductase 2

RGD ID:

1556953

MGI Page

MGI

Description:

Enables alcohol-forming very long-chain fatty acyl-CoA reductase activity. Predicted to be involved in long-chain fatty-acyl-CoA metabolic process. Predicted to act upstream of or within wax biosynthetic process. Located in peroxisome. Is expressed in alveolar sulcus; anterior naris; brain; ovary; and skin. Used to study alopecia and dry eye syndrome. Orthologous to human FAR2 (fatty acyl-CoA reductase 2).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

A230046P18; AW048109; BC055759; fatty acyl-CoA reductase 2; male sterility domain containing 1; male sterility domain-containing protein 1; MGC67167; Mlst; Mlstd1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	FAR2 (fatty acyl-CoA reductase 2)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Far2 (fatty acyl CoA reductase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Far2 (fatty acyl-CoA reductase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	FAR2 (fatty acyl-CoA reductase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	FAR2 (fatty acyl-CoA reductase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Far2 (fatty acyl-CoA reductase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	FAR2 (fatty acyl-CoA reductase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	FAR2 (fatty acyl-CoA reductase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Far2 (fatty acyl-CoA reductase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Far2 (fatty acyl-CoA reductase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	FAR1 (fatty acyl-CoA reductase 1)	HGNC	OrthoMCL
Alliance orthologs ³
Homo sapiens (human):	FAR2 (fatty acyl-CoA reductase 2)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Rattus norvegicus (Norway rat):	Far2 (fatty acyl CoA reductase 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:dkey-97m3.1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Danio rerio (zebrafish):	si:dkey-97m3.1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	CG12268	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PhylomeDB)
Caenorhabditis elegans (roundworm):	fard-1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	fard-1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG1441	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PhylomeDB)
Drosophila melanogaster (fruit fly):	CG14893	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	CG5065	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG5065	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Drosophila melanogaster (fruit fly):	wat	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	CG10096	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	CG17560	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	CG17562	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	CG10097	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	Sgp	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	147,948,914 - 148,084,256 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	147,948,757 - 148,084,256 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	6	148,047,416 - 148,182,758 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	148,047,259 - 148,182,758 (+)	Ensembl			mm10	GRCm38
MGSCv37	6	147,995,938 - 148,131,282 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	6	148,004,586 - 148,139,930 (+)	NCBI		MGSCv36	mm8
Celera	6	151,079,635 - 151,214,866 (+)	NCBI		Celera
Cytogenetic Map	6	G3	NCBI
cM Map	6	78.49	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

alopecia (IAGP)

dry eye syndrome (IAGP)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dichloroethane (EXP)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2-palmitoylglycerol (ISO)

3,4-methylenedioxymethamphetamine (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

arsenite(3-) (ISO)

atrazine (ISO)

belinostat (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP)

Butylbenzyl phthalate (EXP)

cadmium atom (EXP)

cadmium dichloride (EXP)

calcitriol (ISO)

CGP 52608 (ISO)

chromium(6+) (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

copper atom (ISO)

copper(0) (ISO)

dexamethasone (ISO)

Dibutyl phosphate (ISO)

dorsomorphin (ISO)

entinostat (ISO)

ethyl methanesulfonate (ISO)

formaldehyde (ISO)

genistein (EXP)

glyphosate (ISO)

indole-3-methanol (ISO)

indometacin (ISO)

isotretinoin (ISO)

levonorgestrel (ISO)

lipopolysaccharide (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

methylparaben (ISO)

N-nitrosodiethylamine (ISO)

NADP zwitterion (ISO)

NADP(+) (ISO)

nickel atom (ISO)

ozone (ISO)

potassium chromate (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

testosterone (ISO)

testosterone undecanoate (ISO)

titanium dioxide (EXP)

triclosan (ISO)

triphenyl phosphate (ISO)

triptonide (EXP)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

lipid metabolic process (IEA)

long-chain fatty-acyl-CoA metabolic process (IBA,IEA,ISO)

wax biosynthetic process (IEA,TAS)

Cellular Component

peroxisomal membrane (IEA,ISO,ISS)

peroxisome (IBA,IDA,IEA)

Molecular Function

alcohol-forming long-chain fatty acyl-CoA reductase activity (IEA)

alcohol-forming very long-chain fatty acyl-CoA reductase activity (IBA,IDA,IEA,ISO)

oxidoreductase activity (IEA)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal coat appearance (IEA)

abnormal cornea morphology (IAGP)

abnormal eye physiology (IAGP)

abnormal hair follicle morphology (IAGP)

abnormal lens morphology (IEA)

abnormal lipid level (IAGP)

abnormal Meibomian gland morphology (IAGP)

abnormal Meibomian gland physiology (IAGP)

abnormal pilosebaceous unit morphology (IAGP)

abnormal sebocyte differentiation (IAGP)

abnormal skin morphology (IAGP)

abnormal skin sebaceous gland morphology (IAGP)

abnormal tear film morphology (IAGP)

abnormal tear film physiology (IAGP)

alopecia (IAGP)

decreased circulating cholesterol level (IEA)

decreased circulating HDL cholesterol level (IEA)

dry eyes (IAGP)

focal hair loss (IAGP)

increased blinking frequency (IAGP)

increased fasting circulating glucose level (IEA)

increased heart weight (IEA)

increased tear production (IAGP)

small sebaceous gland (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development.	Ko MS, etal., Development 2000 Apr;127(8):1737-49.
2.	MGDs mouse GO annotations	MGD data from the GO Consortium
3.	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4.	Mouse MP Annotation Import Pipeline	RGD automated import pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:8889548	PMID:10349636	PMID:10922068	PMID:11042159	PMID:11076861	PMID:11217851	PMID:15220348	PMID:15220349	PMID:15489334	PMID:16141072	PMID:16141073	PMID:17130451
PMID:21267068	PMID:21677750	PMID:21873635	PMID:24009241	PMID:24194600	PMID:24952961	PMID:25556833	PMID:27208706	PMID:27626380	PMID:28700664	PMID:29652635	PMID:30256126
PMID:30372477	PMID:31220455	PMID:35238077	PMID:37660780	PMID:38164795	PMID:38355793

Genomics

Comparative Map Data

Far2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	147,948,914 - 148,084,256 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	147,948,757 - 148,084,256 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	6	148,047,416 - 148,182,758 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	148,047,259 - 148,182,758 (+)	Ensembl			mm10	GRCm38
MGSCv37	6	147,995,938 - 148,131,282 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	6	148,004,586 - 148,139,930 (+)	NCBI		MGSCv36	mm8
Celera	6	151,079,635 - 151,214,866 (+)	NCBI		Celera
Cytogenetic Map	6	G3	NCBI
cM Map	6	78.49	NCBI

FAR2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	29,149,278 - 29,335,616 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	29,149,016 - 29,341,121 (+)	Ensembl			hg38	GRCh38
GRCh37	12	29,302,211 - 29,488,549 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	29,267,865 - 29,378,273 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	12	29,267,864 - 29,378,272	NCBI
Celera	12	34,522,215 - 34,632,754 (+)	NCBI		Celera
Cytogenetic Map	12	p11.22	NCBI
HuRef	12	29,070,510 - 29,257,494 (+)	NCBI		HuRef
CHM1_1	12	29,267,516 - 29,454,137 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	29,021,810 - 29,208,149 (+)	NCBI		T2T-CHM13v2.0

Far2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	182,705,499 - 182,819,290 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	182,705,381 - 182,825,279 (+)	Ensembl				GRCr8
mRatBN7.2	4	180,973,968 - 181,087,862 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	181,007,622 - 181,087,255 (+)	Ensembl				mRatBN7.2
Rnor_6.0	4	182,446,400 - 182,563,485 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	182,483,194 - 182,565,436 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	246,589,572 - 246,698,456 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	185,758,904 - 185,791,596 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	169,455,254 - 169,577,917 (+)	NCBI		Celera
Cytogenetic Map	4	q44	NCBI

Far2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955505	5,585,846 - 5,663,895 (-)	Ensembl
ChiLan1.0	NW_004955505	5,585,846 - 5,724,234 (-)	NCBI	ChiLan1.0	ChiLan1.0

FAR2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	67,478,866 - 67,668,709 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	67,475,260 - 67,665,013 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	56,975,589 - 57,165,923 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	59,599,063 - 59,785,139 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	59,599,063 - 59,676,543 (-)	Ensembl			panPan2	panpan1.1

FAR2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	18,659,688 - 18,791,757 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	18,661,449 - 18,792,253 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	27,618,455 - 27,750,457 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	18,851,338 - 18,983,048 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	18,852,272 - 18,983,051 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	18,661,033 - 18,792,581 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	18,685,805 - 18,817,601 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	27,773,948 - 27,905,644 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Far2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	80,529,346 - 80,667,427 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936760	1,362,364 - 1,409,418 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936760	1,265,803 - 1,406,405 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FAR2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	44,381,129 - 44,559,374 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	5	44,386,808 - 44,559,506 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	47,705,595 - 47,904,904 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FAR2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	28,869,987 - 29,049,421 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	28,987,566 - 29,046,448 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666069	5,985,117 - 6,176,706 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Far2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624778	6,456,008 - 6,493,697 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624778	6,456,396 - 6,642,551 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Far2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	6	5,704,576 - 5,811,723 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Far2
5989 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	964
Count of miRNA genes:	566
Interacting mature miRNAs:	679
Transcripts:	ENSMUST00000032443, ENSMUST00000111607
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4142079	Skmw15_m	skeletal muscle weight 15 (mouse)			Not determined		6	116829851	149588044	Mouse
10449437	Pas15_m	pulmonary adenoma susceptibility 15 (mouse)					6	128180868	149588044	Mouse
1301686	Trmq1_m	T cell ratio modifier QTL 1 (mouse)			Not determined		6	129330484	149588044	Mouse
1301620	Insq8_m	insulin QTL 8 (mouse)			Not determined		6	129534979	149588044	Mouse
10053680	Lith25_m	lithogenic gene 25 (mouse)			Not determined		6	128601582	149588044	Mouse
4141974	Skmw14_m	skeletal muscle weight 14 (mouse)			Not determined		6	129330484	149588044	Mouse
1301084	Bpq5_m	blood pressure QTL 5 (mouse)			Not determined		6	129330484	149588044	Mouse
14746990	Manh61_m	mandible shape 61 (mouse)					6	130156355	149588044	Mouse
4141295	Rua_m	raffinose acetate tasting (mouse)			Not determined			115546805	149549364	Mouse
1301027	Hdlq12_m	HDL QTL 12 (mouse)			Not determined		6	128601582	149588044	Mouse
10766452	Sle23_m	systematic lupus erythematosus susceptibility 23 (mouse)					6	128601582	149588044	Mouse
25314320	Histh5_m	histamine hypersensitivity 5 (mouse)					6	48696934	148351498	Mouse
1301152	Athsq2_m	atherosclerosis susceptibility QTL 2 (mouse)			Not determined		6	117059949	149588044	Mouse
1301927	Etohcta6_m	ethanol conditioned taste aversion 6 (mouse)			Not determined		6	115578005	149578150	Mouse
4141194	Cyx_m	cycloheximide tasting (mouse)			Not determined			115546805	149549364	Mouse
14746999	Mancz6_m	mandible centroid size 6 (mouse)					6	130156355	149588044	Mouse
1558959	Eamcd2_m	experimental autoimmune myocarditis 2 (mouse)			Not determined		6	129953954	149588044	Mouse
1302089	Wta2_m	weight adult 2 (mouse)			Not determined		6	125269523	149588044	Mouse
4141889	Qui_m	quinine sensitivity, taste (mouse)			Not determined			115546805	149549364	Mouse
1301804	Bulb2_m	bulb size 2 (mouse)			Not determined		6	120416806	149588044	Mouse

Markers in Region

BB378162

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	6	148,176,039 - 148,176,125	UniSTS	GRCm38
MGSCv37	6	148,124,561 - 148,124,647	UniSTS	GRCm37
Celera	6	151,208,145 - 151,208,231	UniSTS
Cytogenetic Map	6	G3	UniSTS
Whitehead/MRC_RH	6	1491.31	UniSTS

RH124714

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	6	148,181,380 - 148,181,478	UniSTS	GRCm38
MGSCv37	6	148,129,902 - 148,130,000	UniSTS	GRCm37
Celera	6	151,213,486 - 151,213,584	UniSTS
Cytogenetic Map	6	G3	UniSTS

Mlstd1

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	6	G3	UniSTS
cM Map	6		UniSTS

UniSTS:235576

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	6	148,113,785 - 148,114,037	UniSTS	GRCm38
MGSCv37	6	148,062,307 - 148,062,559	UniSTS	GRCm37
Celera	6	151,145,916 - 151,146,168	UniSTS
Cytogenetic Map	6	G3	UniSTS

UniSTS:235580

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	6	148,175,926 - 148,176,125	UniSTS	GRCm38
MGSCv37	6	148,124,448 - 148,124,647	UniSTS	GRCm37
Celera	6	151,208,032 - 151,208,231	UniSTS
Cytogenetic Map	6	G3	UniSTS

AW048109

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	6	148,176,722 - 148,176,820	UniSTS	GRCm38
MGSCv37	6	148,125,244 - 148,125,342	UniSTS	GRCm37
Celera	6	151,208,828 - 151,208,926	UniSTS
Cytogenetic Map	6	G3	UniSTS
Whitehead/MRC_RH	6	1490.58	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001347516	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_178797	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006507070	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_036166257	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC132613	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK038584	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK043388	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK043589	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK044054	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK137298	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK161201	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AW048109	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC055759	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466572	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU207318	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000032443 ⟹ ENSMUSP00000032443

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	6	147,948,757 - 148,078,347 (+)	Ensembl
GRCm38.p6 Ensembl	6	148,047,259 - 148,176,849 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000111607 ⟹ ENSMUSP00000107234

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	6	147,948,914 - 148,084,256 (+)	Ensembl
GRCm38.p6 Ensembl	6	148,047,416 - 148,182,758 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000203278

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	6	147,948,913 - 147,951,070 (+)	Ensembl
GRCm38.p6 Ensembl	6	148,047,415 - 148,049,572 (+)	Ensembl

RefSeq Acc Id:

NM_001347516 ⟹ NP_001334445

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	147,948,914 - 148,078,347 (+)	NCBI
GRCm38	6	148,047,416 - 148,176,849 (+)	NCBI

Sequence:

show sequence

GAGAGCAGAGGCGCGGTTCAGAAAAGCTCGAGTGCCTCCTTCATCTCCGGGAGGACCGTGACCA
CCAGCCGGCAAGTCAACCGCACTGAAGCAGCAGGACTCTCTTCCCAGAACCATACAGGAACGGA
GGAATCATGTCCATGATCGCAGCTTTCTACAGCAACAAGTCTATCCTCATCACAGGGGCCACAG
GCTTCCTGGGCAAGGTGCTCATGGAGAAGTTATTCCGTACCAGCCCCCACTTGAAAGTCATTTA
CATCCTCGTGAGACCCAAGTCTGGACAGACACTGCAGGAAAGGGTTTTCCAGATCCTCAACAGT
AAGCTGTTTGAGAAAGTCAAAGAAGTCTGTCCAAATGTGCATGAGAAGATCAGACCCATCTCCG
CAGACCTCAACCAGCGTGACTTCGCCATCAGCAAGGAAGACGTGCAAGAACTTCTGTCCTGTAC
CAATATTATCTTCCACTGTGCAGCCACAGTGCGCTTTGATGCACATCTGAGAGAAGCTGTGCAG
CTGAACGTCACGGCCACCCAGCAGCTCCTGCTAATGGCCAGCCAGATGCCAAAGCTGGAAGCCT
TCATCCACATCTCCACTGCCTTTTCCAACTGCAACCTGAGCCACATTGATGAGGTCATCTACCC
ATGCCCTGTGGAGCCAAGAAAGATCATTGACTCCATGGAGTGGTTAGATGACTCTATCATTGAA
GAGATCACTCCTAAGCTGATTGGGGACCGGCCCAATACCTACACCTACACCAAAGCCTTGGGAG
AGATAGTAGTGCAGCAAGAGAGCGGAAACCTGAATGTGGCCATTGTCAGGCCATCCATAGTGGG
AGCAACCTGGCAGGAGCCTTTCCCGGGTTGGGTTGATAATCTAAATGGACCCAGCGGACTCATT
ATTGCGACTGGGAAAGGATTTCTTCGGTCCATAAAAGCGACTCCCATGGCAGTGGCAGATGTGA
TTCCAGTTGACACAGTTGTTAATCTCACCATAGCAGTAGGATGGTATACTGCAGTTCATAGGCC
TAAATCAACATTAATCTACCATTCCACATCTGGTAATCTCAATCCCTGTAACTGGTATAAAATG
GGATTACAGGTCTTGGCGACCATCGAAAAGATCCCATTTGAGAGTGCTTTCAGAAGGCCAAATG
CTGACTTCACCACCAGCAATTTCACCACCCATTATTGGAACACCGTCAGCCACCGGGTCCCAGC
CATCATCTATGACTTCTATCTGAGGCTTACTGGAAGGAAACCCAGAATGCTGAAGCTCATGAAC
CGGCTGCTAAAAACCATTTCCATGCTGGAGTATTTCATCAACCACAGTTGGGAATGGAGCACAA
ACAACACGGAGATGCTTCTGTCAGAGCTCAGTCCTGAAGACCAGAGAGTATTCAACTTTGATGT
GCGTCAGTTGAACTGGCTCGAATACATTGAAAATTACGTTTTGGGGGTTAAGAAGTATCTACTA
AAAGAGGATCTGGCCGGTATCCCCAAAGCAAAGCAACACCTAAGAAGGCTCCGGAACATTCACT
ACCTCTTTAACACTGCCCTGTTTCTTATCATCTGGCGCCTCCTCATTGCAAGGTCTCAGATGGC
TCGGAACGTCTGGTTCTTCATTGTAAGCTTCTGTTACAAGTTCATCTCCTACTTTCGGGCCTCC
AGCACACTCAAGGTCTAAGAACATTATACCAGCCCATCATCTGGAACCTCAGATACCTCTAAGG
CAGTAAACTGGGTCTTAAGCTAGAAAGTAACAAGAAGCACTCCCAAGCTTCCAGTCAAAGTTGC
CATTCCACCTTCTTCCCTATTCTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
CGCGTGCGCGCGTGCGCATGCGTGTAGGATTGCTTGTTTGGTGTTTTGTTTTTGTTTTAGTGAG
GAAAGTCCATCTCTAACTGCATACATTTACAGAAACGTAACTTCCAGATTATATCCTGACACCA
CCACTCCACACTATCACACAGGAAGCATGAAAGCACTCCTTTTCCTTTATTTAGCTACTTCCCG
ACAAAACTAATTTAAACTCACTAAAGATGGAAGAACACGTGGCAGAAGTCTAAATAGGCTAGAG
AAAGGCAGCACCAAGCAGGGAAGCATGCTCAGTACCAAGGCAAGAGCTTCCAACCATTGTGAAC
TGCGCAGCTCAACCTCCTCACAATACAACACAAGTAGCCTTCTGTGTTAAACACTACAGTCCTG
GTTGAATTGAGGGGAAGTAGGCTCATGCCTATCCTGTTTCTCACCTCTGTCCCCAGCTTAATGC
TAAAAGGAACAAACGGTGTAGATGAGTACACACCAAATGAGAACACAATCATACATGCACCAGG
GAGTCTTGTGTACTTCACTTATAACATGATTTGGACATCCCTTACTCTGCGTTTTTCATCACCA
TTGTTCTGAAAGCTTCAAGTCCTCTTCTTACTTAATGACGTTGCCAAAGCCCTTCTACTTAAGT
GTTTCACTCAGGCCTCAGTCAGAAAGGATGATGGGGAGGGTGACGTTCCTAGACTCGAACCATG
AAAACCCTCCTGACCTTTACCAGTGAGGGAAGCAAAACTTCAAATAAAATGTAAAGTTTTAGTT
TCTGTCTTCATGTGTGGAGTTGGGAGGAGCACATTCCTGGTCACCCAAGGCCCTTGTACCTCAG
TTAACCCAGTCACACACCTTAGTTAACTCTATAATGTACAGTGGTCAAAACAACAAAGAGTAAA
GCCTTTGGCTTAAGCATTTTAAATACAAATAGAAACCTTTAAACAGTCACAAATTCTCATACCC
ATAAGATGGCACTCAGTTTTGCTCATATTTGAGATGAGGGCATCCTGGACTGCAGGATCTCTGC
ATGGTAACAATGAAATAGTCAAATAAAAGTAAAGTCCACACAAATCACTGAAAATTGCACACAA
GCAGCTAACATGTGTATGCTTACATTCTGATGGCTGAAGTGTGGCCATTACGGAGGTCTCCTCA
GAACCATGAAGAATATGTTGGGAAAACCCTTTCTGGCAGTTTCTGCAAATTTGATTAAGGTCAG
TGACTACTGTCCAGGCAGAAAACTCAACTCTGAAATAAAGTACCTGTGGGTTTCCCTATGTGAG
ACATCTGCAAGACTTGTGAGTTACATGAAAGACACCAGCTAAGGATACAGTAATAGGAACTCAA
CAGGCAGGAAGAGACTAACAGGACAGTTCTAAAGATTTACTACCTTTTGATCATTGTATCATCA
ATCCAAGATCTCCAGCGACTGAGTTTGAACTTCAGATTAAATAAAACTCTGAATTACTAAAAAA
AAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_178797 ⟹ NP_848912

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	147,948,914 - 148,084,256 (+)	NCBI
GRCm38	6	148,047,416 - 148,182,758 (+)	NCBI
MGSCv37	6	147,995,938 - 148,131,282 (+)	RGD
Celera	6	151,079,635 - 151,214,866 (+)	RGD
cM Map	6		ENTREZGENE

Sequence:

show sequence

GAGAGCAGAGGCGCGGTTCAGAAAAGCTCGAGTGCCTCCTTCATCTCCGGGAGGACCGTGACCA
CCAGCCGGCAAGTCAACCGCACTGAAGCAGCAGGACTCTCTTCCCAGAACCATACAGGAACGGA
GGAATCATGTCCATGATCGCAGCTTTCTACAGCAACAAGTCTATCCTCATCACAGGGGCCACAG
GCTTCCTGGGCAAGGTGCTCATGGAGAAGTTATTCCGTACCAGCCCCCACTTGAAAGTCATTTA
CATCCTCGTGAGACCCAAGTCTGGACAGACACTGCAGGAAAGGGTTTTCCAGATCCTCAACAGT
AAGCTGTTTGAGAAAGTCAAAGAAGTCTGTCCAAATGTGCATGAGAAGATCAGACCCATCTCCG
CAGACCTCAACCAGCGTGACTTCGCCATCAGCAAGGAAGACGTGCAAGAACTTCTGTCCTGTAC
CAATATTATCTTCCACTGTGCAGCCACAGTGCGCTTTGATGCACATCTGAGAGAAGCTGTGCAG
CTGAACGTCACGGCCACCCAGCAGCTCCTGCTAATGGCCAGCCAGATGCCAAAGCTGGAAGCCT
TCATCCACATCTCCACTGCCTTTTCCAACTGCAACCTGAGCCACATTGATGAGGTCATCTACCC
ATGCCCTGTGGAGCCAAGAAAGATCATTGACTCCATGGAGTGGTTAGATGACTCTATCATTGAA
GAGATCACTCCTAAGCTGATTGGGGACCGGCCCAATACCTACACCTACACCAAAGCCTTGGGAG
AGATAGTAGTGCAGCAAGAGAGCGGAAACCTGAATGTGGCCATTGTCAGGCCATCCATAGTGGG
AGCAACCTGGCAGGAGCCTTTCCCGGGTTGGGTTGATAATCTAAATGGACCCAGCGGACTCATT
ATTGCGACTGGGAAAGGATTTCTTCGGTCCATAAAAGCGACTCCCATGGCAGTGGCAGATGTGA
TTCCAGTTGACACAGTTGTTAATCTCACCATAGCAGTAGGATGGTATACTGCAGTTCATAGGCC
TAAATCAACATTAATCTACCATTCCACATCTGGTAATCTCAATCCCTGTAACTGGTATAAAATG
GGATTACAGGTCTTGGCGACCATCGAAAAGATCCCATTTGAGAGTGCTTTCAGAAGGCCAAATG
CTGACTTCACCACCAGCAATTTCACCACCCATTATTGGAACACCGTCAGCCACCGGGTCCCAGC
CATCATCTATGACTTCTATCTGAGGCTTACTGGAAGGAAACCCAGAATGCTGAAGCTCATGAAC
CGGCTGCTAAAAACCATTTCCATGCTGGAGTATTTCATCAACCACAGTTGGGAATGGAGCACAA
ACAACACGGAGATGCTTCTGTCAGAGCTCAGTCCTGAAGACCAGAGAGTATTCAACTTTGATGT
GCGTCAGTTGAACTGGCTCGAATACATTGAAAATTACGTTTTGGGGGTTAAGAAGTATCTACTA
AAAGAGGATCTGGCCGGTATCCCCAAAGCAAAGCAACACCTAAGAAGGCTCCGGAACATTCACT
ACCTCTTTAACACTGCCCTGTTTCTTATCATCTGGCGCCTCCTCATTGCAAGGTCTCAGATGGC
TCGGAACGTCTGGTTCTTCATTTGTCCCTTGTTCAAGCTGTGAGTGACACCTGTTACACATCAT
AGCAAGTATATACCTGGGCCTTAGGAAACTTCACCTTAGTTTTCTAAGGCTCAACCTTCAACAG
TCAGGAAAGTCAGCAACTGGAGTTCAAAGGAATGCAGTGACCTTCATCAGAACCCCAAACTGGA
CAACACCATCTTGTCAATATGGCTTAATATTAATATGGCTGTAACACAGGGCCAGTCCCTGTTT
CCTTTATTAACCATGTGAGCTGATTACAGTTTTTTTAAAGTCTAGACTAGTTTTCCATATGTTT
TACACATTTTATTCTGACATCTTTAAAAACAAAGGACGCACACATTTGCATTTATCAATGCCCT
TTTCTTTAAACTCGGGTTGACGTCCATCCTCTAGGATCTGCTTTCCATATTGTCTGTTTGCTGG
GAGGCATCAGAGGTGCTGTCTTCACCTGGCACTGTTGGCTGGGCTGACTCTCCAGTTAGCTGCA
TAATTTCTTCTATGACATTTGTAACAGACACAACATATACAAGACGACTGCAGTTTGTTGTTTT
CCTTGGCTGTTTTTTTCTTTTTTAAATATGTTTCCGGGTTCTCATATTTTCTTTTTCTTTGAAT
ATATTGCACAACATGTTATTATTAGAAAAGGCTTTATGTCTCAGGCAAAAAGTTTTTCTCCACC
CACAAGGTACTAATGTGTGTTGTTCTCTAAAAGAGGTAAGTGGTTGTCTGTGTGGCCATCCGCA
AAGGGGACCTGAGAGGGGAAGGAAGGCAAGACGAGAGTGTTAGTTCCACTCTACAGGATGTCTC
TAATCACAGGCTTTATAAGGGGCAATCCTTTCTATTTAGACATAACACCACCACCAGCACTTAA
GACAAGCACCACCTGCAGTACCACTTACAGAACGGACAGGCTTGTAGGATCCAAGTCTGAAACG
ACAGCAAATTATTTCCACTATAAATTTTCCAATTCCATGTAACATGCCTGCAATAAATAAGTTC
AAGTTTTTCATTAAGTTGCCTTTGAAATTGCTATGTGAGAATCAAAAGCTGTACCAACTGTAGA
GGGTTAGACCACAAAAGGAATGAAGCCAAGCCGTCTGTGGCTGCCTCTGAGGCTCAAGGTACTC
TCAAGGGTTACATTTAAAAACAAACATTTCATCAAGATCATAATCCACACACACAATACACACC
TGATATAACCTACCCAAGACTTTCTTACATAATTTTGTAAGTAACAGATTTAAATGAAAAAAGC
AAAAGAACTGTGTAAGGACAGCTGCTCATTTGTACCAGAGATATGAATGAAAACAAGGTGGGGC
TCCAAAAACACAACTATCTAGCTTGGAGTAACCAATGGCTCAAGATGAAGCTCCCAAAAAAATT
CCAGAATCTTGAACAAAAACCAAAAGCATTACTGATTAAATCAAACCACCACCATCATGACTTC
ATAGTGTACAGGGAAAAAAATTTCAATACATCTGTGATGCTTCCTGGGCATTTTCTTGTTTAAC
TCTACAATACACTTACAAACCAGATAATTACAATTCATAAAAGGTAAGTGAACTATCTAAGGAC
TACCAAGTCAGTAGTGGAACACAGATTCTGTTCTAGCTCTGTCTGTAATTAATACACAGGATGT
ATGTGGCTTACCAATAATCTTCCTTACGTTACTGATTCCTGTGAATTGGATGTGCTTACAGGAT
ATGAAATATATTTTAGAGCTTTAGAATTCAAAGAAGTTCCAAATATTAAAACATGAAAATGTGA
CTA

hide sequence

RefSeq Acc Id:

XM_006507070 ⟹ XP_006507133

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	148,010,903 - 148,078,347 (+)	NCBI
GRCm38	6	148,109,386 - 148,176,849 (+)	NCBI

Sequence:

show sequence

GCAGGTGTCCGAGGCAAGCCCAGCCCACAGAGCCTTCCAAGCTCAGCTGGGGGAGATCTAGAAC
ACAGGCGGGGGATATAATGGTGCAATGAACCGTTCGTTCTTCTGGAGCCTTGTGGTGAAAACTG
CTGCTCCTGAGATGCTGTGAAAGACTCTTTGGAGGTGATTTCAATTCTGCTGTATTCTCTACTC
AGCCTTATCCACACCTTCTGGTCTCAGAGAAACACAAGCCAGAAAGGGGGAAAGACAGACAGAC
AGGACTCTCTTCCCAGAACCATACAGGAACGGAGGAATCATGTCCATGATCGCAGCTTTCTACA
GCAACAAGTCTATCCTCATCACAGGGGCCACAGGCTTCCTGGGCAAGGTGCTCATGGAGAAGTT
ATTCCGTACCAGCCCCCACTTGAAAGTCATTTACATCCTCGTGAGACCCAAGTCTGGACAGACA
CTGCAGGAAAGGGTTTTCCAGATCCTCAACAGTAAGCTGTTTGAGAAAGTCAAAGAAGTCTGTC
CAAATGTGCATGAGAAGATCAGACCCATCTCCGCAGACCTCAACCAGCGTGACTTCGCCATCAG
CAAGGAAGACGTGCAAGAACTTCTGTCCTGTACCAATATTATCTTCCACTGTGCAGCCACAGTG
CGCTTTGATGCACATCTGAGAGAAGCTGTGCAGCTGAACGTCACGGCCACCCAGCAGCTCCTGC
TAATGGCCAGCCAGATGCCAAAGCTGGAAGCCTTCATCCACATCTCCACTGCCTTTTCCAACTG
CAACCTGAGCCACATTGATGAGGTCATCTACCCATGCCCTGTGGAGCCAAGAAAGATCATTGAC
TCCATGGAGTGGTTAGATGACTCTATCATTGAAGAGATCACTCCTAAGCTGATTGGGGACCGGC
CCAATACCTACACCTACACCAAAGCCTTGGGAGAGATAGTAGTGCAGCAAGAGAGCGGAAACCT
GAATGTGGCCATTGTCAGGCCATCCATAGTGGGAGCAACCTGGCAGGAGCCTTTCCCGGGTTGG
GTTGATAATCTAAATGGACCCAGCGGACTCATTATTGCGACTGGGAAAGGATTTCTTCGGTCCA
TAAAAGCGACTCCCATGGCAGTGGCAGATGTGATTCCAGTTGACACAGTTGTTAATCTCACCAT
AGCAGTAGGATGGTATACTGCAGTTCATAGGCCTAAATCAACATTAATCTACCATTCCACATCT
GGTAATCTCAATCCCTGTAACTGGTATAAAATGGGATTACAGGTCTTGGCGACCATCGAAAAGA
TCCCATTTGAGAGTGCTTTCAGAAGGCCAAATGCTGACTTCACCACCAGCAATTTCACCACCCA
TTATTGGAACACCGTCAGCCACCGGGTCCCAGCCATCATCTATGACTTCTATCTGAGGCTTACT
GGAAGGAAACCCAGAATGCTGAAGCTCATGAACCGGCTGCTAAAAACCATTTCCATGCTGGAGT
ATTTCATCAACCACAGTTGGGAATGGAGCACAAACAACACGGAGATGCTTCTGTCAGAGCTCAG
TCCTGAAGACCAGAGAGTATTCAACTTTGATGTGCGTCAGTTGAACTGGCTCGAATACATTGAA
AATTACGTTTTGGGGGTTAAGAAGTATCTACTAAAAGAGGATCTGGCCGGTATCCCCAAAGCAA
AGCAACACCTAAGAAGGCTCCGGAACATTCACTACCTCTTTAACACTGCCCTGTTTCTTATCAT
CTGGCGCCTCCTCATTGCAAGGTCTCAGATGGCTCGGAACGTCTGGTTCTTCATTGTAAGCTTC
TGTTACAAGTTCATCTCCTACTTTCGGGCCTCCAGCACACTCAAGGTCTAAGAACATTATACCA
GCCCATCATCTGGAACCTCAGATACCTCTAAGGCAGTAAACTGGGTCTTAAGCTAGAAAGTAAC
AAGAAGCACTCCCAAGCTTCCAGTCAAAGTTGCCATTCCACCTTCTTCCCTATTCTTTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGTGCGCGCGTGCGCATGCGTGTAGGATT
GCTTGTTTGGTGTTTTGTTTTTGTTTTAGTGAGGAAAGTCCATCTCTAACTGCATACATTTACA
GAAACGTAACTTCCAGATTATATCCTGACACCACCACTCCACACTATCACACAGGAAGCATGAA
AGCACTCCTTTTCCTTTATTTAGCTACTTCCCGACAAAACTAATTTAAACTCACTAAAGATGGA
AGAACACGTGGCAGAAGTCTAAATAGGCTAGAGAAAGGCAGCACCAAGCAGGGAAGCATGCTCA
GTACCAAGGCAAGAGCTTCCAACCATTGTGAACTGCGCAGCTCAACCTCCTCACAATACAACAC
AAGTAGCCTTCTGTGTTAAACACTACAGTCCTGGTTGAATTGAGGGGAAGTAGGCTCATGCCTA
TCCTGTTTCTCACCTCTGTCCCCAGCTTAATGCTAAAAGGAACAAACGGTGTAGATGAGTACAC
ACCAAATGAGAACACAATCATACATGCACCAGGGAGTCTTGTGTACTTCACTTATAACATGATT
TGGACATCCCTTACTCTGCGTTTTTCATCACCATTGTTCTGAAAGCTTCAAGTCCTCTTCTTAC
TTAATGACGTTGCCAAAGCCCTTCTACTTAAGTGTTTCACTCAGGCCTCAGTCAGAAAGGATGA
TGGGGAGGGTGACGTTCCTAGACTCGAACCATGAAAACCCTCCTGACCTTTACCAGTGAGGGAA
GCAAAACTTCAAATAAAATGTAAAGTTTTAGTTTCTGTCTTCATGTGTGGAGTTGGGAGGAGCA
CATTCCTGGTCACCCAAGGCCCTTGTACCTCAGTTAACCCAGTCACACACCTTAGTTAACTCTA
TAATGTACAGTGGTCAAAACAACAAAGAGTAAAGCCTTTGGCTTAAGCATTTTAAATACAAATA
GAAACCTTTAAACAGTCACAAATTCTCATACCCATAAGATGGCACTCAGTTTTGCTCATATTTG
AGATGAGGGCATCCTGGACTGCAGGATCTCTGCATGGTAACAATGAAATAGTCAAATAAAAGTA
AAGTCCACACAAATCACTGAAAATTGCACACAAGCAGCTAACATGTGTATGCTTACATTCTGAT
GGCTGAAGTGTGGCCATTACGGAGGTCTCCTCAGAACCATGAAGAATATGTTGGGAAAACCCTT
TCTGGCAGTTTCTGCAAATTTGATTAAGGTCAGTGACTACTGTCCAGGCAGAAAACTCAACTCT
GAAATAAAGTACCTGTGGGTTTCCCTATGTGAGACATCTGCAAGACTTGTGAGTTACATGAAAG
ACACCAGCTAAGGATACAGTAATAGGAACTCAACAGGCAGGAAGAGACTAACAGGACAGTTCTA
AAGATTTACTACCTTTTGATCATTGTATCATCAATCCAAGATCTCCAGCGACTGAGTTTGAACT
TCAGATTAAATAAAACTCTGAATTACTA

hide sequence

RefSeq Acc Id:

XM_036166257 ⟹ XP_036022150

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	148,018,183 - 148,078,347 (+)	NCBI

Sequence:

show sequence

GCCAGATCCACTTCATACATTCTGGACTCTCTTCCCAGAACCATACAGGAACGGAGGAATCATG
TCCATGATCGCAGCTTTCTACAGCAACAAGTCTATCCTCATCACAGGGGCCACAGGCTTCCTGG
GCAAGGTGCTCATGGAGAAGTTATTCCGTACCAGCCCCCACTTGAAAGTCATTTACATCCTCGT
GAGACCCAAGTCTGGACAGACACTGCAGGAAAGGGTTTTCCAGATCCTCAACAGTAAGCTGTTT
GAGAAAGTCAAAGAAGTCTGTCCAAATGTGCATGAGAAGATCAGACCCATCTCCGCAGACCTCA
ACCAGCGTGACTTCGCCATCAGCAAGGAAGACGTGCAAGAACTTCTGTCCTGTACCAATATTAT
CTTCCACTGTGCAGCCACAGTGCGCTTTGATGCACATCTGAGAGAAGCTGTGCAGCTGAACGTC
ACGGCCACCCAGCAGCTCCTGCTAATGGCCAGCCAGATGCCAAAGCTGGAAGCCTTCATCCACA
TCTCCACTGCCTTTTCCAACTGCAACCTGAGCCACATTGATGAGGTCATCTACCCATGCCCTGT
GGAGCCAAGAAAGATCATTGACTCCATGGAGTGGTTAGATGACTCTATCATTGAAGAGATCACT
CCTAAGCTGATTGGGGACCGGCCCAATACCTACACCTACACCAAAGCCTTGGGAGAGATAGTAG
TGCAGCAAGAGAGCGGAAACCTGAATGTGGCCATTGTCAGGCCATCCATAGTGGGAGCAACCTG
GCAGGAGCCTTTCCCGGGTTGGGTTGATAATCTAAATGGACCCAGCGGACTCATTATTGCGACT
GGGAAAGGATTTCTTCGGTCCATAAAAGCGACTCCCATGGCAGTGGCAGATGTGATTCCAGTTG
ACACAGTTGTTAATCTCACCATAGCAGTAGGATGGTATACTGCAGTTCATAGGCCTAAATCAAC
ATTAATCTACCATTCCACATCTGGTAATCTCAATCCCTGTAACTGGTATAAAATGGGATTACAG
GTCTTGGCGACCATCGAAAAGATCCCATTTGAGAGTGCTTTCAGAAGGCCAAATGCTGACTTCA
CCACCAGCAATTTCACCACCCATTATTGGAACACCGTCAGCCACCGGGTCCCAGCCATCATCTA
TGACTTCTATCTGAGGCTTACTGGAAGGAAACCCAGAATGCTGAAGCTCATGAACCGGCTGCTA
AAAACCATTTCCATGCTGGAGTATTTCATCAACCACAGTTGGGAATGGAGCACAAACAACACGG
AGATGCTTCTGTCAGAGCTCAGTCCTGAAGACCAGAGAGTATTCAACTTTGATGTGCGTCAGTT
GAACTGGCTCGAATACATTGAAAATTACGTTTTGGGGGTTAAGAAGTATCTACTAAAAGAGGAT
CTGGCCGGTATCCCCAAAGCAAAGCAACACCTAAGAAGGCTCCGGAACATTCACTACCTCTTTA
ACACTGCCCTGTTTCTTATCATCTGGCGCCTCCTCATTGCAAGGTCTCAGATGGCTCGGAACGT
CTGGTTCTTCATTGTAAGCTTCTGTTACAAGTTCATCTCCTACTTTCGGGCCTCCAGCACACTC
AAGGTCTAAGAACATTATACCAGCCCATCATCTGGAACCTCAGATACCTCTAAGGCAGTAAACT
GGGTCTTAAGCTAGAAAGTAACAAGAAGCACTCCCAAGCTTCCAGTCAAAGTTGCCATTCCACC
TTCTTCCCTATTCTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGTGCGC
GCGTGCGCATGCGTGTAGGATTGCTTGTTTGGTGTTTTGTTTTTGTTTTAGTGAGGAAAGTCCA
TCTCTAACTGCATACATTTACAGAAACGTAACTTCCAGATTATATCCTGACACCACCACTCCAC
ACTATCACACAGGAAGCATGAAAGCACTCCTTTTCCTTTATTTAGCTACTTCCCGACAAAACTA
ATTTAAACTCACTAAAGATGGAAGAACACGTGGCAGAAGTCTAAATAGGCTAGAGAAAGGCAGC
ACCAAGCAGGGAAGCATGCTCAGTACCAAGGCAAGAGCTTCCAACCATTGTGAACTGCGCAGCT
CAACCTCCTCACAATACAACACAAGTAGCCTTCTGTGTTAAACACTACAGTCCTGGTTGAATTG
AGGGGAAGTAGGCTCATGCCTATCCTGTTTCTCACCTCTGTCCCCAGCTTAATGCTAAAAGGAA
CAAACGGTGTAGATGAGTACACACCAAATGAGAACACAATCATACATGCACCAGGGAGTCTTGT
GTACTTCACTTATAACATGATTTGGACATCCCTTACTCTGCGTTTTTCATCACCATTGTTCTGA
AAGCTTCAAGTCCTCTTCTTACTTAATGACGTTGCCAAAGCCCTTCTACTTAAGTGTTTCACTC
AGGCCTCAGTCAGAAAGGATGATGGGGAGGGTGACGTTCCTAGACTCGAACCATGAAAACCCTC
CTGACCTTTACCAGTGAGGGAAGCAAAACTTCAAATAAAATGTAAAGTTTTAGTTTCTGTCTTC
ATGTGTGGAGTTGGGAGGAGCACATTCCTGGTCACCCAAGGCCCTTGTACCTCAGTTAACCCAG
TCACACACCTTAGTTAACTCTATAATGTACAGTGGTCAAAACAACAAAGAGTAAAGCCTTTGGC
TTAAGCATTTTAAATACAAATAGAAACCTTTAAACAGTCACAAATTCTCATACCCATAAGATGG
CACTCAGTTTTGCTCATATTTGAGATGAGGGCATCCTGGACTGCAGGATCTCTGCATGGTAACA
ATGAAATAGTCAAATAAAAGTAAAGTCCACACAAATCACTGAAAATTGCACACAAGCAGCTAAC
ATGTGTATGCTTACATTCTGATGGCTGAAGTGTGGCCATTACGGAGGTCTCCTCAGAACCATGA
AGAATATGTTGGGAAAACCCTTTCTGGCAGTTTCTGCAAATTTGATTAAGGTCAGTGACTACTG
TCCAGGCAGAAAACTCAACTCTGAAATAAAGTACCTGTGGGTTTCCCTATGTGAGACATCTGCA
AGACTTGTGAGTTACATGAAAGACACCAGCTAAGGATACAGTAATAGGAACTCAACAGGCAGGA
AGAGACTAACAGGACAGTTCTAAAGATTTACTACCTTTTGATCATTGTATCATCAATCCAAGAT
CTCCAGCGACTGAGTTTGAACTTCAGATTAAATAAAACTCTGAATTACTA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001334445	(Get FASTA)	NCBI Sequence Viewer
	NP_848912	(Get FASTA)	NCBI Sequence Viewer
	XP_006507133	(Get FASTA)	NCBI Sequence Viewer
	XP_036022150	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH55759	(Get FASTA)	NCBI Sequence Viewer
	BAC30056	(Get FASTA)	NCBI Sequence Viewer
	BAC31532	(Get FASTA)	NCBI Sequence Viewer
	BAC31590	(Get FASTA)	NCBI Sequence Viewer
	BAE36237	(Get FASTA)	NCBI Sequence Viewer
	EDL10740	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000032443
	ENSMUSP00000032443.8
	ENSMUSP00000107234
	ENSMUSP00000107234.4
GenBank Protein	Q7TNT2	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_848912 ⟸ NM_178797
- Peptide Label:	isoform 2
- UniProtKB:	Q7TNT2 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MSMIAAFYSNKSILITGATGFLGKVLMEKLFRTSPHLKVIYILVRPKSGQTLQERVFQILNSKL FEKVKEVCPNVHEKIRPISADLNQRDFAISKEDVQELLSCTNIIFHCAATVRFDAHLREAVQLN VTATQQLLLMASQMPKLEAFIHISTAFSNCNLSHIDEVIYPCPVEPRKIIDSMEWLDDSIIEEI TPKLIGDRPNTYTYTKALGEIVVQQESGNLNVAIVRPSIVGATWQEPFPGWVDNLNGPSGLIIA TGKGFLRSIKATPMAVADVIPVDTVVNLTIAVGWYTAVHRPKSTLIYHSTSGNLNPCNWYKMGL QVLATIEKIPFESAFRRPNADFTTSNFTTHYWNTVSHRVPAIIYDFYLRLTGRKPRMLKLMNRL LKTISMLEYFINHSWEWSTNNTEMLLSELSPEDQRVFNFDVRQLNWLEYIENYVLGVKKYLLKE DLAGIPKAKQHLRRLRNIHYLFNTALFLIIWRLLIARSQMARNVWFFICPLFKL hide sequence

RefSeq Acc Id:	XP_006507133 ⟸ XM_006507070
- Peptide Label:	isoform X1
- UniProtKB:	Q8BH72 (UniProtKB/Swiss-Prot), Q3TTT7 (UniProtKB/Swiss-Prot), B2KFC6 (UniProtKB/Swiss-Prot), Q8CAK7 (UniProtKB/Swiss-Prot), Q7TNT2 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MSMIAAFYSNKSILITGATGFLGKVLMEKLFRTSPHLKVIYILVRPKSGQTLQERVFQILNSKL FEKVKEVCPNVHEKIRPISADLNQRDFAISKEDVQELLSCTNIIFHCAATVRFDAHLREAVQLN VTATQQLLLMASQMPKLEAFIHISTAFSNCNLSHIDEVIYPCPVEPRKIIDSMEWLDDSIIEEI TPKLIGDRPNTYTYTKALGEIVVQQESGNLNVAIVRPSIVGATWQEPFPGWVDNLNGPSGLIIA TGKGFLRSIKATPMAVADVIPVDTVVNLTIAVGWYTAVHRPKSTLIYHSTSGNLNPCNWYKMGL QVLATIEKIPFESAFRRPNADFTTSNFTTHYWNTVSHRVPAIIYDFYLRLTGRKPRMLKLMNRL LKTISMLEYFINHSWEWSTNNTEMLLSELSPEDQRVFNFDVRQLNWLEYIENYVLGVKKYLLKE DLAGIPKAKQHLRRLRNIHYLFNTALFLIIWRLLIARSQMARNVWFFIVSFCYKFISYFRASST LKV hide sequence

RefSeq Acc Id:	NP_001334445 ⟸ NM_001347516
- Peptide Label:	isoform 1
- UniProtKB:	Q8BH72 (UniProtKB/Swiss-Prot), Q3TTT7 (UniProtKB/Swiss-Prot), B2KFC6 (UniProtKB/Swiss-Prot), Q8CAK7 (UniProtKB/Swiss-Prot), Q7TNT2 (UniProtKB/Swiss-Prot)

Ensembl Acc Id:

ENSMUSP00000107234 ⟸ ENSMUST00000111607

Ensembl Acc Id:

ENSMUSP00000032443 ⟸ ENSMUST00000032443

RefSeq Acc Id:	XP_036022150 ⟸ XM_036166257
- Peptide Label:	isoform X1
- UniProtKB:	Q8BH72 (UniProtKB/Swiss-Prot), Q7TNT2 (UniProtKB/Swiss-Prot), Q3TTT7 (UniProtKB/Swiss-Prot), B2KFC6 (UniProtKB/Swiss-Prot), Q8CAK7 (UniProtKB/Swiss-Prot)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q7TNT2-F1-model_v2	AlphaFold	Q7TNT2	1-515	view protein structure

Promoters

RGD ID:

6891554

Promoter ID:

EPDNEW_M9228

Type:

multiple initiation site

Name:

Far2_1

Description:

Mus musculus fatty acyl CoA reductase 2 , transcript variant1, mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M9229

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	6	148,047,417 - 148,047,477	EPDNEW

RGD ID:

6891556

Promoter ID:

EPDNEW_M9229

Type:

multiple initiation site

Name:

Far2_2

Description:

Mus musculus fatty acyl CoA reductase 2 , transcript variant1, mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M9228

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	6	148,109,510 - 148,109,570	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:2687035	AgrOrtholog
Ensembl Genes	ENSMUSG00000030303	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000032443	ENTREZGENE
	ENSMUST00000032443.14	UniProtKB/Swiss-Prot
	ENSMUST00000111607	ENTREZGENE
	ENSMUST00000111607.4	UniProtKB/Swiss-Prot
Gene3D-CATH	NAD(P)-binding Rossmann-like Domain	UniProtKB/Swiss-Prot
InterPro	FAR	UniProtKB/Swiss-Prot
	FAR_C	UniProtKB/Swiss-Prot
	Male_sterile_NAD-bd	UniProtKB/Swiss-Prot
	NAD(P)-bd_dom_sf	UniProtKB/Swiss-Prot
KEGG Report	mmu:330450	UniProtKB/Swiss-Prot
MGD	MGI:2687035	ENTREZGENE
NCBI Gene	330450	ENTREZGENE
PANTHER	FATTY ACYL-COA REDUCTASE 2	UniProtKB/Swiss-Prot
	PTHR11011	UniProtKB/Swiss-Prot
Pfam	NAD_binding_4	UniProtKB/Swiss-Prot
	Sterile	UniProtKB/Swiss-Prot
PhenoGen	Far2	PhenoGen
Superfamily-SCOP	SSF51735	UniProtKB/Swiss-Prot
UniProt	B2KFC6	ENTREZGENE
	FACR2_MOUSE	UniProtKB/Swiss-Prot
	Q3TTT7	ENTREZGENE
	Q7TNT2	ENTREZGENE
	Q8BH72	ENTREZGENE
	Q8CAK7	ENTREZGENE
UniProt Secondary	B2KFC6	UniProtKB/Swiss-Prot
	Q3TTT7	UniProtKB/Swiss-Prot
	Q8BH72	UniProtKB/Swiss-Prot
	Q8CAK7	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - MGI

Mammalian Phenotype