Rusc1 (RUN and SH3 domain containing 1) - Rat Genome Database

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Gene: Rusc1 (RUN and SH3 domain containing 1) Mus musculus
Analyze
Symbol: Rusc1
Name: RUN and SH3 domain containing 1
RGD ID: 1556891
MGI Page MGI
Description: Enables actin binding activity. Predicted to be involved in protein polyubiquitination. Located in Golgi apparatus; early endosome; and microtubule cytoskeleton. Is expressed in gut; nervous system; and sensory organ. Orthologous to human RUSC1 (RUN and SH3 domain containing 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2210403N08Rik; AA408288; AP-4 complex accessory subunit RUSC1; NESCA; new molecule containing SH3 at the carboxy-terminus; RUN and SH3 domain-containing protein 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39388,991,282 - 89,000,670 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl388,991,288 - 89,000,618 (-)EnsemblGRCm39 Ensembl
GRCm38389,083,975 - 89,093,363 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl389,083,981 - 89,093,311 (-)EnsemblGRCm38mm10GRCm38
MGSCv37388,887,899 - 88,897,285 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36389,169,908 - 89,179,217 (-)NCBIMGSCv36mm8
Celera389,122,668 - 89,132,054 (-)NCBICelera
Cytogenetic Map3F1NCBI
cM Map339.01NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:15024033   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073  
PMID:21267068   PMID:21873635   PMID:22404429   PMID:24623780   PMID:34321999   PMID:34709266   PMID:38355793  


Genomics

Comparative Map Data
Rusc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39388,991,282 - 89,000,670 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl388,991,288 - 89,000,618 (-)EnsemblGRCm39 Ensembl
GRCm38389,083,975 - 89,093,363 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl389,083,981 - 89,093,311 (-)EnsemblGRCm38mm10GRCm38
MGSCv37388,887,899 - 88,897,285 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36389,169,908 - 89,179,217 (-)NCBIMGSCv36mm8
Celera389,122,668 - 89,132,054 (-)NCBICelera
Cytogenetic Map3F1NCBI
cM Map339.01NCBI
RUSC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381155,320,894 - 155,331,118 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1155,320,894 - 155,331,114 (+)EnsemblGRCh38hg38GRCh38
GRCh371155,290,685 - 155,300,909 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361153,557,264 - 153,567,533 (+)NCBINCBI36Build 36hg18NCBI36
Build 341152,107,440 - 152,113,976NCBI
Celera1128,363,782 - 128,374,051 (+)NCBICelera
Cytogenetic Map1q22NCBI
HuRef1126,652,942 - 126,663,296 (+)NCBIHuRef
CHM1_11156,686,081 - 156,696,350 (+)NCBICHM1_1
T2T-CHM13v2.01154,459,434 - 154,469,658 (+)NCBIT2T-CHM13v2.0
Rusc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82176,785,711 - 176,794,981 (-)NCBIGRCr8
mRatBN7.22174,487,921 - 174,497,266 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2174,486,665 - 174,507,776 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.02188,394,114 - 188,403,391 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02207,806,473 - 207,815,974 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42181,157,849 - 181,167,536 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2168,432,165 - 168,441,279 (-)NCBICelera
Cytogenetic Map2q34NCBI
Rusc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555451,765,800 - 1,773,889 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555451,765,364 - 1,773,889 (+)NCBIChiLan1.0ChiLan1.0
RUSC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2194,513,392 - 94,523,637 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1194,244,718 - 94,254,964 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01130,665,390 - 130,675,635 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11134,270,420 - 134,280,592 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1134,270,420 - 134,280,592 (+)Ensemblpanpan1.1panPan2
RUSC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1742,232,791 - 42,240,862 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl742,233,156 - 42,241,345 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha741,723,723 - 41,731,683 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0742,101,999 - 42,109,959 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl742,102,000 - 42,109,075 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1741,881,877 - 41,889,835 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0741,935,655 - 41,943,611 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0742,219,647 - 42,227,604 (-)NCBIUU_Cfam_GSD_1.0
Rusc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505825,778,226 - 25,787,715 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365804,808,546 - 4,818,221 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365804,808,620 - 4,818,097 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RUSC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl494,489,207 - 94,499,256 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1494,489,202 - 94,499,993 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24103,280,858 - 103,291,688 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RUSC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1208,504,123 - 8,514,113 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl208,503,727 - 8,513,519 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660387,841,479 - 7,851,435 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rusc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624885949,542 - 957,142 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rusc1
149 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:612
Count of miRNA genes:171
Interacting mature miRNAs:175
Transcripts:ENSMUST00000052539, ENSMUST00000090929, ENSMUST00000166687
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301971Cia5_mcollagen induced arthritis QTL 5 (mouse)Not determined366046658100046795Mouse
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
26884378Skwq6_mskull length QTL 6, 10 week (mouse)351907421102307316Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382147043116147184Mouse
1301392Eae3_msusceptibility to experimental allergic encephalomyelitis 3 (mouse)Not determined379548730113548837Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383463991117464137Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
26884380Skwq1_mskull length QTL 1, 5 week (mouse)343954435101607316Mouse
14746984Manh54_mmandible shape 54 (mouse)385289152119289152Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387228015121228015Mouse
1301272Cfsw1_mcystic fibrosis survival to weaning 1 (mouse)Not determined383882912117883044Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
1301791Char4_mP. chabaudi malaria resistance QTL 4 (mouse)Not determined369625509100655290Mouse
11049572Lmr11c_mleishmaniasis resistance 11c (mouse)372139967106140094Mouse
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
4141294Bmd24_mbone mineral density 24 (mouse)Not determined36174006195740241Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
10043981Cia5a_mcollagen induced arthritis QTL 5a (mouse)Not determined38717045489140094Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387208904125316236Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
1300595Tmevd2_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 2 (mouse)Not determined375463302109463549Mouse
11251721Ewc3_methanol withdrawal and consumption 3 (mouse)369568554103568554Mouse
1300982Lmr11_mleishmaniasis resistance 11 (mouse)Not determined372139967106140094Mouse
12880419V125Dq4_mvitamin D active form serum level QTL 4 (mouse)35890730792907307Mouse
1301947Pcfm3_mperiosteal circumference and femur length 3 (mouse)Not determined381084652115084797Mouse
4142099Cq3_mcholesterol QTL 3 (mouse)Not determined384888918118889067Mouse
11039512Ltpr3b_mLeishmania tropica response 3b (mouse)383463991117464137Mouse
11039519Ltpr3_mLeishmania tropica response 3 (mouse)356704102100464137Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
11039507Ltpr3g_mLeishmania tropica response 3g (mouse)383463991117464137Mouse
11039508Ltpr3f_mLeishmania tropica response 3f (mouse)383463991117464137Mouse
1301422Sle11_msystematic lupus erythematosus susceptibility 11 (mouse)Not determined370208904104209042Mouse
11039509Ltpr3e_mLeishmania tropica response 3e (mouse)383463991117464137Mouse
11039510Ltpr3d_mLeishmania tropica response 3d (mouse)383463991117464137Mouse
11039511Ltpr3c_mLeishmania tropica response 3c (mouse)383463991117464137Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)340954435115793649Mouse

Markers in Region
AA408288  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38389,084,006 - 89,084,174UniSTSGRCm38
MGSCv37388,887,928 - 88,888,096UniSTSGRCm37
Celera389,122,697 - 89,122,865UniSTS
Cytogenetic Map3F2UniSTS
Whitehead/MRC_RH3904.52UniSTS
AW534365  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38389,084,388 - 89,084,506UniSTSGRCm38
MGSCv37388,888,310 - 88,888,428UniSTSGRCm37
Celera389,123,079 - 89,123,197UniSTS
Cytogenetic Map3F2UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001083807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001083808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001429159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_028188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006502134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC140468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK008817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK039664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK042689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB871992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC052081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC056360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC057034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY201665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000052539   ⟹   ENSMUSP00000056640
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl388,991,288 - 89,000,618 (-)Ensembl
GRCm38.p6 Ensembl389,083,981 - 89,093,311 (-)Ensembl
Ensembl Acc Id: ENSMUST00000090929   ⟹   ENSMUSP00000088447
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl388,991,288 - 89,000,597 (-)Ensembl
GRCm38.p6 Ensembl389,083,981 - 89,093,290 (-)Ensembl
Ensembl Acc Id: ENSMUST00000166687   ⟹   ENSMUSP00000130477
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl388,991,288 - 88,997,352 (-)Ensembl
GRCm38.p6 Ensembl389,083,981 - 89,090,045 (-)Ensembl
Ensembl Acc Id: ENSMUST00000196043   ⟹   ENSMUSP00000142622
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl388,996,546 - 88,997,282 (-)Ensembl
GRCm38.p6 Ensembl389,089,239 - 89,089,975 (-)Ensembl
Ensembl Acc Id: ENSMUST00000196223   ⟹   ENSMUSP00000143662
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl388,995,528 - 88,997,282 (-)Ensembl
GRCm38.p6 Ensembl389,088,221 - 89,089,975 (-)Ensembl
Ensembl Acc Id: ENSMUST00000198506
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl388,996,362 - 88,997,062 (-)Ensembl
GRCm38.p6 Ensembl389,089,055 - 89,089,755 (-)Ensembl
Ensembl Acc Id: ENSMUST00000200357
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl388,994,428 - 88,997,048 (-)Ensembl
GRCm38.p6 Ensembl389,087,121 - 89,089,741 (-)Ensembl
RefSeq Acc Id: NM_001083807   ⟹   NP_001077276
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39388,991,284 - 89,000,670 (-)NCBI
GRCm38389,083,977 - 89,093,363 (-)NCBI
MGSCv37388,887,899 - 88,897,285 (-)RGD
Celera389,122,668 - 89,132,054 (-)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001083808   ⟹   NP_001077277
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39388,991,284 - 88,997,338 (-)NCBI
GRCm38389,083,977 - 89,090,031 (-)NCBI
MGSCv37388,887,899 - 88,897,285 (-)RGD
Celera389,122,668 - 89,132,054 (-)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_028188   ⟹   NP_082464
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39388,991,284 - 89,000,670 (-)NCBI
GRCm38389,083,977 - 89,093,363 (-)NCBI
MGSCv37388,887,899 - 88,897,285 (-)RGD
Celera389,122,668 - 89,132,054 (-)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006502134   ⟹   XP_006502197
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39388,991,282 - 88,997,701 (-)NCBI
GRCm38389,083,975 - 89,090,390 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001077276   ⟸   NM_001083807
- Peptide Label: isoform 2
- UniProtKB: Q6PHT9 (UniProtKB/Swiss-Prot),   Q8BG26 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_082464   ⟸   NM_028188
- Peptide Label: isoform 1
- UniProtKB: Q8BG26 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001077277   ⟸   NM_001083808
- Peptide Label: isoform 3
- UniProtKB: Q3TDG5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006502197   ⟸   XM_006502134
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSMUSP00000056640   ⟸   ENSMUST00000052539
Ensembl Acc Id: ENSMUSP00000088447   ⟸   ENSMUST00000090929
Ensembl Acc Id: ENSMUSP00000130477   ⟸   ENSMUST00000166687
Ensembl Acc Id: ENSMUSP00000142622   ⟸   ENSMUST00000196043
Ensembl Acc Id: ENSMUSP00000143662   ⟸   ENSMUST00000196223
Protein Domains
RUN   SH3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BG26-F1-model_v2 AlphaFold Q8BG26 1-893 view protein structure

Promoters
RGD ID:6834392
Promoter ID:MM_KWN:34902
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:UC008PXK.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36388,892,986 - 88,894,062 (-)MPROMDB
RGD ID:6834391
Promoter ID:MM_KWN:34903
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day6,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Spleen
Transcripts:NM_001083808
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36388,893,896 - 88,894,947 (-)MPROMDB
RGD ID:6848775
Promoter ID:MM_TRO:6295
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day4,   Brain
Transcripts:MTR012842.3.1208.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36388,896,139 - 88,896,639 (-)MPROMDB
RGD ID:6834390
Promoter ID:MM_KWN:34904
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:NM_001083807,   NM_028188
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36388,897,061 - 88,898,197 (-)MPROMDB
RGD ID:6881194
Promoter ID:EPDNEW_M4048
Type:initiation region
Name:Rusc1_1
Description:Mus musculus RUN and SH3 domain containing 1 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4049  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38389,089,993 - 89,090,053EPDNEW
RGD ID:6881196
Promoter ID:EPDNEW_M4049
Type:initiation region
Name:Rusc1_2
Description:Mus musculus RUN and SH3 domain containing 1 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4048  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38389,093,305 - 89,093,365EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1919546 AgrOrtholog
Ensembl Genes ENSMUSG00000041263 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000052539 ENTREZGENE
  ENSMUST00000052539.13 UniProtKB/Swiss-Prot
  ENSMUST00000090929 ENTREZGENE
  ENSMUST00000090929.12 UniProtKB/Swiss-Prot
  ENSMUST00000166687 ENTREZGENE
  ENSMUST00000166687.6 UniProtKB/Swiss-Prot
  ENSMUST00000196043.2 UniProtKB/TrEMBL
  ENSMUST00000196223.5 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.900 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3 Domains UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Run_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Run_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RUN_RUSC1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RUSC1_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:72296 UniProtKB/Swiss-Prot
MGD MGI:1919546 ENTREZGENE
NCBI Gene 72296 ENTREZGENE
PANTHER RUN AND SH3 DOMAIN CONTAINING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RUN AND SH3 DOMAIN-CONTAINING PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam RUN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3_9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rusc1 PhenoGen
PROSITE RUN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART RUN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF140741 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF50044 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JE41_MOUSE UniProtKB/TrEMBL
  A0A0G2JGQ9_MOUSE UniProtKB/TrEMBL
  Q3TDG5 ENTREZGENE, UniProtKB/TrEMBL
  Q6PHT9 ENTREZGENE
  Q8BG26 ENTREZGENE
  Q9CVB4_MOUSE UniProtKB/TrEMBL
  RUSC1_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q6PHT9 UniProtKB/Swiss-Prot