Or2d36 (olfactory receptor family 2 subfamily D member 36) - Rat Genome Database

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Gene: Or2d36 (olfactory receptor family 2 subfamily D member 36) Mus musculus
Analyze
Symbol: Or2d36
Name: olfactory receptor family 2 subfamily D member 36
RGD ID: 1553680
MGI Page MGI
Description: Predicted to enable olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and sensory perception of smell. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to human OR2D3 (olfactory receptor family 2 subfamily D member 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: B1 olfactory receptor; GA_x6K02T2PBJ9-9497411-9498355; MOR260; MOR260-2; olfactory receptor 716; olfactory receptor MOR260-2; Olfr716
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397106,746,505 - 106,747,536 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7106,737,534 - 106,749,788 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm387107,147,298 - 107,148,329 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7107,138,327 - 107,150,581 (+)Ensemblmm10GRCm38
MGSCv377114,290,832 - 114,291,776 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv367106,938,495 - 106,939,439 (+)NCBIMGSCv36mm8
Celera7107,143,715 - 107,144,659 (+)NCBICelera
Cytogenetic Map7E3NCBI
cM Map756.1NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA,ISA)
plasma membrane  (IBA,IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11416212   PMID:11802173   PMID:11875048   PMID:12477932   PMID:14611657   PMID:21873635   PMID:32295537  


Genomics

Comparative Map Data
Or2d36
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397106,746,505 - 106,747,536 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7106,737,534 - 106,749,788 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm387107,147,298 - 107,148,329 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7107,138,327 - 107,150,581 (+)Ensemblmm10GRCm38
MGSCv377114,290,832 - 114,291,776 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv367106,938,495 - 106,939,439 (+)NCBIMGSCv36mm8
Celera7107,143,715 - 107,144,659 (+)NCBICelera
Cytogenetic Map7E3NCBI
cM Map756.1NCBI
OR2D3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38116,921,002 - 6,921,994 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl116,921,002 - 6,921,994 (+)Ensemblhg38GRCh38
GRCh37116,942,233 - 6,943,225 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36116,898,809 - 6,899,801 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34116,898,808 - 6,899,801NCBI
Celera117,061,307 - 7,062,299 (+)NCBICelera
Cytogenetic Map11p15.4NCBI
HuRef116,600,833 - 6,601,825 (+)NCBIHuRef
CHM1_1116,941,186 - 6,942,178 (+)NCBICHM1_1
T2T-CHM13v2.0116,979,425 - 6,980,417 (+)NCBIT2T-CHM13v2.0
Or2d36
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81170,439,985 - 170,440,929 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1170,439,985 - 170,440,929 (+)EnsemblGRCr8
mRatBN7.21161,028,174 - 161,029,118 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1161,020,256 - 161,029,717 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1169,300,781 - 169,301,725 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01176,486,791 - 176,487,735 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01169,171,008 - 169,171,952 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01171,274,305 - 171,275,249 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1171,274,305 - 171,275,249 (+)Ensemblrn6Rnor6.0
Rnor_5.01178,279,343 - 178,280,287 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41164,459,852 - 164,460,796 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1158,941,819 - 158,942,763 (+)NCBICelera
RGSC_v3.11164,555,328 - 164,556,273 (+)NCBI
Cytogenetic Map1q33NCBI
LOC102014349
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541422,824,126 - 22,825,094 (+)NCBIChiLan1.0ChiLan1.0
LOC100975556
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v299,325,841 - 9,328,957 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1119,291,247 - 9,294,364 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0117,023,410 - 7,024,467 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1116,706,475 - 6,707,532 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl116,706,497 - 6,707,489 (+)EnsemblpanPan2panpan1.1
OR2D3D
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12130,639,675 - 30,640,867 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
ROS_Cfam_1.02131,448,694 - 31,449,639 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.12130,771,104 - 30,772,048 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02130,941,243 - 30,942,187 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02131,172,788 - 31,173,732 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
LOC106145523
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494755,489,523 - 55,490,438 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004937087129,722 - 130,637 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC100738683
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.192,829,615 - 2,835,156 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.293,344,439 - 3,345,941 (-)NCBISscrofa10.2Sscrofa10.2susScr3
OR2D3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1157,890,924 - 57,893,405 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl157,891,612 - 57,892,604 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666038155,650,321 - 155,651,858 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LOC101700372
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248178,746,684 - 8,747,616 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248178,746,657 - 8,747,616 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
LOC116894175
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12105,271,735 - 105,272,679 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Or2d36
30 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:100
Count of miRNA genes:98
Interacting mature miRNAs:100
Transcripts:ENSMUST00000098137
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357460Vtbt4_mvertebral trabecular bone trait 4 (mouse)Not determined7101693381135693530Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
27226781Tibl3_mtibia length 3, 5 week (mouse)774849748122199223Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
1301781Capsq3_mcapsaicin sensitivity related QTL 3 (mouse)Not determined787143137119485380Mouse
14746989Manh62_mmandible shape 62 (mouse)775742528109742528Mouse
11039524Tbbr3_mTrypanosoma brucei brucei response 3 (mouse)7100750722134750843Mouse
27226769Tibl12_mtibia length 12, 10 week (mouse)787249208126499172Mouse
10043926Bw1n_mbody weight 1 in NSY (mouse)Not determined745161966118693530Mouse
27226765Tibl18_mtibia length 18, 16 week (mouse)781849748126499172Mouse
27226763Feml20_mfemur length 20, 16 week (mouse)785049208124199223Mouse
4142500Morq1_mmodifier of Rs1 QTL 1 (mouse)Not determined80551681114551791Mouse
1301647Elpt_melevated leptin (mouse)Not determined786500186120500329Mouse
13208555Lgth10_mbody length 10 (mouse)751649748125599172Mouse
26884408Bzwq13_mbi-zygomatic width QTL 13, 16 week (mouse)761749748121399223Mouse
1301937Skull10_mskull morphology 10 (mouse)Not determined791482996125483156Mouse
1300528Ssial3_msusceptibility to sialadenitis 3 (mouse)Not determined793391848127392041Mouse
5491192Mobq1_mmultigenic obesity QTL 1 (mouse)Not determined7105250663139250811Mouse
1301566Adip3_madiposity 3 (mouse)Not determined775394215109394346Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730199425108999207Mouse
26884398Humsd6_mhumerus midshaft diameter 6, 16 week (mouse)778649748136901729Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
27226790Feml15_mfemur length 15, 10 week (mouse)787249208126499172Mouse
13524852Asrq7a_macoustic startle response 7a (mouse)7105350008139350008Mouse
13524850Asrq7_macoustic startle response 7 (mouse)798394974132394974Mouse
1302062Stheal6_msoft tissue heal 6 (mouse)Not determined787043932121044066Mouse
26884440Sklq4_mskull length QTL 4, 5 week (mouse)765249748126499172Mouse
27095903Scvln10_msacral vertebrae length 2, 10 week (mouse)781449748126499172Mouse
27226715Metcl3_mmetatarsal-calcaneal length 3, 5 week (mouse)767849748119499223Mouse
26884444Sklq8_mskull length QTL 8, 10 week (mouse)767849748124199223Mouse
25823170Hrsq7_mhost response to SARS QTL 7, log titer (mouse)754819589116822815Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
10412110Cctq1_mcentral corneal thickness QTL 1 (mouse)Not determined780551681114551791Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
1301447Fembm3_mfemoral bone morphometry 3 (mouse)Not determined7100993261134993342Mouse
10412104Tons2_mtongue size 2 (mouse)Not determined799837716133837716Mouse
1301188Heal6_mwound healing/regeneration 6 (mouse)Not determined787043932121044066Mouse
4142312Nilac4_mnicotine induced locomotor activity 4 (mouse)Not determined7102485219136485380Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773149748143153737Mouse
1301105Cfld4_mcystic fibrosis lung disease 4 (mouse)Not determined7101693381135693530Mouse
1300721Cfbw3_mcystic fibrosis body weight 3 (mouse)Not determined7101693381135693530Mouse
27095929Pglq8_mpelvic girdle length QTL 8, 10 week (mouse)787849208108099207Mouse
27226745Metcl9_mmetatarsal-calcaneal length 9, 10 week (mouse)774849748122199223Mouse
27095930Ulnl10_mulna length 10, 16 week (mouse)780849748126699172Mouse
27095923Pglq3_mpelvic girdle length QTL 3, 5 week (mouse)781249748124199223Mouse
27095916Scvln15_msacral vertebrae length 2, 16 week (mouse)761749748123699223Mouse
1357664Nba3_mNew Zealand Black autoimmunity 3 (mouse)Not determined791482996125483156Mouse
1301478Eae26_msusceptibility to experimental allergic encephalomyelitis 26 (mouse)Not determined798164922132165010Mouse
26884451Sklq14_mskull length QTL 14, 16 week (mouse)767849748124999172Mouse
27095910Pglq13_mpelvic girdle length QTL 13, 16 week (mouse)773049748125699172Mouse
13463473Hbbcq4_mhemoglobin concentration QTL 4 (mouse)787043932121044066Mouse
11553869Stmm2b_mskin tumor modifier of MSM 2a (mouse)773725965107725965Mouse
27095907Scvln4_msacral vertebrae length 2, 5 week (mouse)769949748120499223Mouse
1301997Cia7_mcollagen induced arthritis QTL 7 (mouse)Not determined785365595112533819Mouse

Markers in Region
UniSTS:491670  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387107,147,226 - 107,148,329UniSTSGRCm38
MGSCv377114,290,740 - 114,291,843UniSTSGRCm37
Celera7107,143,623 - 107,144,726UniSTS
Cytogenetic Map7E3UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000098137   ⟹   ENSMUSP00000095740
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7106,746,433 - 106,747,536 (+)Ensembl
GRCm38.p6 Ensembl7107,147,226 - 107,148,329 (+)Ensembl
Ensembl Acc Id: ENSMUST00000209942   ⟹   ENSMUSP00000147403
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7106,737,537 - 106,746,578 (+)Ensembl
GRCm38.p6 Ensembl7107,138,330 - 107,147,371 (+)Ensembl
Ensembl Acc Id: ENSMUST00000210474   ⟹   ENSMUSP00000147429
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7106,740,521 - 106,747,031 (+)Ensembl
GRCm38.p6 Ensembl7107,141,314 - 107,147,824 (+)Ensembl
Ensembl Acc Id: ENSMUST00000213367   ⟹   ENSMUSP00000150131
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7106,737,534 - 106,749,788 (+)Ensembl
GRCm38.p6 Ensembl7107,138,327 - 107,150,581 (+)Ensembl
Ensembl Acc Id: ENSMUST00000214819   ⟹   ENSMUSP00000149362
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7106,737,534 - 106,749,788 (+)Ensembl
GRCm38.p6 Ensembl7107,138,327 - 107,150,581 (+)Ensembl
Ensembl Acc Id: ENSMUST00000215284   ⟹   ENSMUSP00000150710
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7106,737,534 - 106,749,788 (+)Ensembl
GRCm38.p6 Ensembl7107,138,327 - 107,150,581 (+)Ensembl
Ensembl Acc Id: ENSMUST00000216871   ⟹   ENSMUSP00000150175
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7106,737,534 - 106,749,788 (+)Ensembl
GRCm38.p6 Ensembl7107,138,327 - 107,150,581 (+)Ensembl
RefSeq Acc Id: NM_146604   ⟹   NP_666815
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397106,746,505 - 106,747,536 (+)NCBI
GRCm387107,147,298 - 107,148,329 (+)NCBI
MGSCv377114,290,832 - 114,291,776 (+)RGD
Celera7107,143,715 - 107,144,659 (+)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_666815   ⟸   NM_146604
- UniProtKB: Q9EPG6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000150175   ⟸   ENSMUST00000216871
Ensembl Acc Id: ENSMUSP00000147429   ⟸   ENSMUST00000210474
Ensembl Acc Id: ENSMUSP00000150131   ⟸   ENSMUST00000213367
Ensembl Acc Id: ENSMUSP00000095740   ⟸   ENSMUST00000098137
Ensembl Acc Id: ENSMUSP00000150710   ⟸   ENSMUST00000215284
Ensembl Acc Id: ENSMUSP00000147403   ⟸   ENSMUST00000209942
Ensembl Acc Id: ENSMUSP00000149362   ⟸   ENSMUST00000214819
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9EPG6-F1-model_v2 AlphaFold Q9EPG6 1-314 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3030550 AgrOrtholog
Ensembl Genes ENSMUSG00000073896 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000098137 ENTREZGENE
  ENSMUST00000098137.3 UniProtKB/TrEMBL
  ENSMUST00000209942.2 UniProtKB/TrEMBL
  ENSMUST00000210474.2 UniProtKB/TrEMBL
  ENSMUST00000213367.3 UniProtKB/TrEMBL
  ENSMUST00000214819.3 UniProtKB/TrEMBL
  ENSMUST00000215284.3 UniProtKB/TrEMBL
  ENSMUST00000216871.3 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro 7TM_GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
KEGG Report mmu:258597 UniProtKB/TrEMBL
MGD MGI:3030550 ENTREZGENE
NCBI Gene 258597 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/TrEMBL
  7tm_4 UniProtKB/TrEMBL
PhenoGen Or2d36 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A1B0GR72_MOUSE UniProtKB/TrEMBL
  A0A1B0GR93_MOUSE UniProtKB/TrEMBL
  Q9EPG6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-05-24 Or2d36  olfactory receptor family 2 subfamily D member 36  Olfr716  olfactory receptor 716  Symbol and/or name change 5135510 APPROVED