Ankrd40 (ankyrin repeat domain 40) - Rat Genome Database

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Gene: Ankrd40 (ankyrin repeat domain 40) Mus musculus
Analyze
Symbol: Ankrd40
Name: ankyrin repeat domain 40
RGD ID: 1553519
MGI Page MGI
Description: Is expressed in genitourinary system. Orthologous to human ANKRD40 (ankyrin repeat domain 40).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1110011C06Rik; 5530600A18Rik; ankyrin repeat domain-containing protein 40; Gcap; Gcap15; granule cell antiserum positive 15; MGC29030; RP23-65I14.1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391194,218,827 - 94,232,673 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1194,218,827 - 94,232,667 (+)EnsemblGRCm39 Ensembl
GRCm381194,328,001 - 94,341,847 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1194,328,001 - 94,341,841 (+)EnsemblGRCm38mm10GRCm38
MGSCv371194,189,315 - 94,203,161 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361194,144,239 - 94,156,013 (+)NCBIMGSCv36mm8
Celera11103,946,715 - 103,960,619 (+)NCBICelera
Cytogenetic Map11DNCBI
cM Map1158.9NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (ISO)
4-hydroxyphenyl retinamide  (EXP)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (ISO)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
acrylamide  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (ISO)
ammonium chloride  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
azathioprine  (ISO)
benzo[a]pyrene  (EXP)
benzo[e]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
cadmium sulfate  (EXP)
carbon nanotube  (EXP)
CGP 52608  (ISO)
clofibrate  (EXP)
clotrimazole  (ISO)
cyclophosphamide  (ISO)
danazol  (ISO)
decabromodiphenyl ether  (ISO)
diarsenic trioxide  (ISO)
dioxygen  (ISO)
doxepin  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
ethanol  (EXP)
flavonoids  (ISO)
fluphenazine  (ISO)
folic acid  (EXP)
furan  (ISO)
haloperidol  (ISO)
hydrogen peroxide  (ISO)
methapyrilene  (ISO)
methimazole  (ISO)
nimesulide  (ISO)
omeprazole  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
PCB138  (EXP)
perfluorohexanesulfonic acid  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctanoic acid  (ISO)
pirinixic acid  (EXP)
potassium dichromate  (EXP)
rifampicin  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (ISO)
sulindac  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
thioacetamide  (ISO)
thiram  (ISO)
titanium dioxide  (EXP)
trichloroethene  (EXP,ISO)
triphenyl phosphate  (ISO)
triptonide  (EXP)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:7808216   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11544199   PMID:12477932   PMID:14610273   PMID:15489334   PMID:15618518   PMID:16141072   PMID:16141073  
PMID:18287559   PMID:21677750   PMID:32325033   PMID:32675240  


Genomics

Comparative Map Data
Ankrd40
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391194,218,827 - 94,232,673 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1194,218,827 - 94,232,667 (+)EnsemblGRCm39 Ensembl
GRCm381194,328,001 - 94,341,847 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1194,328,001 - 94,341,841 (+)EnsemblGRCm38mm10GRCm38
MGSCv371194,189,315 - 94,203,161 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361194,144,239 - 94,156,013 (+)NCBIMGSCv36mm8
Celera11103,946,715 - 103,960,619 (+)NCBICelera
Cytogenetic Map11DNCBI
cM Map1158.9NCBI
ANKRD40
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381750,693,198 - 50,707,914 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1750,693,198 - 50,707,914 (-)EnsemblGRCh38hg38GRCh38
GRCh371748,770,559 - 48,785,275 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361746,127,682 - 46,140,262 (-)NCBINCBI36Build 36hg18NCBI36
Celera1745,231,886 - 45,246,618 (-)NCBICelera
Cytogenetic Map17q21.33NCBI
HuRef1744,137,961 - 44,152,694 (-)NCBIHuRef
CHM1_11748,834,537 - 48,849,263 (-)NCBICHM1_1
T2T-CHM13v2.01751,560,394 - 51,575,123 (-)NCBIT2T-CHM13v2.0
Ankrd40
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81079,778,966 - 79,792,212 (+)NCBIGRCr8
mRatBN7.21079,282,075 - 79,295,322 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1079,282,075 - 79,295,320 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1083,887,128 - 83,900,518 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01083,385,249 - 83,398,639 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01078,899,551 - 78,912,940 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01082,032,656 - 82,045,937 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1082,032,656 - 82,045,935 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01081,865,469 - 81,878,116 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41082,977,241 - 82,985,181 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1078,070,881 - 78,084,128 (+)NCBICelera
Cytogenetic Map10q26NCBI
Ankrd40
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545111,078,834 - 11,085,303 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545111,078,839 - 11,085,303 (+)NCBIChiLan1.0ChiLan1.0
ANKRD40
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21966,885,141 - 66,899,618 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11771,692,142 - 71,706,628 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01744,787,502 - 44,802,232 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11749,660,790 - 49,668,423 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1749,660,790 - 49,668,423 (-)Ensemblpanpan1.1panPan2
ANKRD40
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1926,597,596 - 26,610,458 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl926,599,762 - 26,605,484 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha925,990,159 - 26,002,924 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0927,391,890 - 27,404,661 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl927,391,901 - 27,404,651 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1926,159,313 - 26,171,868 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0926,418,069 - 26,430,849 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0926,548,375 - 26,561,146 (-)NCBIUU_Cfam_GSD_1.0
Ankrd40
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560226,036,673 - 26,052,409 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649011,022,545 - 11,039,652 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649011,022,644 - 11,038,461 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANKRD40
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1226,978,215 - 26,995,714 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11226,978,213 - 26,995,760 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21227,118,390 - 27,136,049 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ANKRD40
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11642,629,764 - 42,644,823 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1642,629,773 - 42,642,046 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607713,345,885 - 13,360,940 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ankrd40
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247956,559,983 - 6,571,847 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ankrd40
488 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1389
Count of miRNA genes:655
Interacting mature miRNAs:813
Transcripts:ENSMUST00000021227, ENSMUST00000051221, ENSMUST00000107818, ENSMUST00000124087, ENSMUST00000149867
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse
1302034Pkccl_mprotein kinase C content in lungs (mouse)Not determined1191604608121973369Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170691198104691366Mouse
1300766Skull16_mskull morphology 16 (mouse)Not determined1181574481115574636Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172019649106019734Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
27226758Femd3_mfemur midshaft diameter 3, 5 week (mouse)1180890826101890826Mouse
14747003Mancz9_mmandible centroid size 9 (mouse)1185844911119844911Mouse
1301640Lore4_mloss of righting induced by ethanol 4 (mouse)Not determined1179156009107616472Mouse
10412288Carg4_mCandida albicans resistance gene 4 (mouse)Not determined1181810267115810267Mouse
11251723Ewc5_methanol withdrawal and consumption 5 (mouse)1189869251121973369Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170691198104691366Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166733420100733652Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170691198104691366Mouse
10413882Moe1_mmodifier of epilepsy 1 (mouse)1177770978111771099Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116483033698830473Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116483033698830473Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
10045617Heal26_mwound healing/regeneration 26 (mouse)Not determined1192939373112544554Mouse
10045616Heal25_mwound healing/regeneration 25 (mouse)Not determined1177437183111437322Mouse
1357631Motr1_mmodifier of tubby retinal degeneration 1 (mouse)Not determined1187691198103274115Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172726125106726289Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116483033698830473Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172818615106818733Mouse
1301414Heal10_mwound healing/regeneration 10 (mouse)Not determined1177437183111437322Mouse
15092049Wsigrme3_mweek six growth rate, maternal effect 3 (mouse)118487732496629512Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170691198104691366Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166733420100733652Mouse
1300649Crhq1_mcompensatory renal hypertrophy QTL 1 (mouse)Not determined1181574481115574636Mouse
27226789Feml16_mfemur length 16, 10 week (mouse)1187490826121873369Mouse
14746970Manh71_mmandible shape 71 (mouse)1179416257113416257Mouse
15092057Lgrme3_mlate growth rate, maternal effect 3 (mouse)118487732496629512Mouse
10043865T2dm5sa_mtype 2 diabetes mellitus 5 in SMXA RI mice (mouse)Not determined1179813759104502698Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172818615106818733Mouse
1301072Eae22_mexperimental allergic encephalomyelitis 22 (mouse)Not determined1182377698116377820Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
4141939Pregq2_mpregnancy QTL 2 (mouse)Not determined1194063779118022724Mouse
11038695Par8_mpulmonary adenoma resistance 8 (mouse)1177063779111063918Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166733420100733652Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116215600596156153Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166733420100733652Mouse
1301491Abbp4_mA/J and C57BL/6 blood pressure 4 (mouse)Not determined118869958899081597Mouse
15014785Mvlq1_mmacrovesicular liver lesion QTL 1 (mouse)1186608320120608320Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66733420100733652Mouse
15039374Adip29_madiposity 29 (mouse)1186608320120608320Mouse
1301095El6_mepilepsy 6 (mouse)Not determined1193229183121973369Mouse
27226731Tibmd4_mtibia midshaft diameter 4, 10 week (mouse)1194190826118890826Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
15039376Bw42_mbody weight QTL 42 (mouse)1186608320120608320Mouse
1558753Ath19_matherosclerosis 19 (mouse)Not determined1191604608121973369Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
1300847Par1_mpulmonary adenoma resistance 1 (mouse)Not determined119406377996167421Mouse
10044007Hbnr14_mHeligmosomoides bakeri nematode resistance 14 (mouse)Not determined1187502600121502698Mouse
1302124Eae7_msusceptibility to experimental allergic encephalomyelitis 7 (mouse)Not determined117757387399377820Mouse
13524529Bodwtq10_mbody wweight QTL 10 (mouse)119067951297699512Mouse

Markers in Region
03.MMHAP28FRA9.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381194,330,417 - 94,330,567UniSTSGRCm38
MGSCv371194,191,731 - 94,191,881UniSTSGRCm37
Celera11103,949,135 - 103,949,285UniSTS
Cytogenetic Map11CUniSTS
Whitehead_YAC11 UniSTS


Sequence


Ensembl Acc Id: ENSMUST00000021227   ⟹   ENSMUSP00000021227
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1194,219,080 - 94,230,335 (+)Ensembl
GRCm38.p6 Ensembl1194,328,254 - 94,339,509 (+)Ensembl
Ensembl Acc Id: ENSMUST00000051221   ⟹   ENSMUSP00000061637
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1194,218,839 - 94,230,749 (+)Ensembl
GRCm38.p6 Ensembl1194,328,013 - 94,339,923 (+)Ensembl
Ensembl Acc Id: ENSMUST00000107818   ⟹   ENSMUSP00000103448
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1194,218,827 - 94,232,667 (+)Ensembl
GRCm38.p6 Ensembl1194,328,001 - 94,341,841 (+)Ensembl
Ensembl Acc Id: ENSMUST00000124087
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1194,229,116 - 94,230,974 (+)Ensembl
GRCm38.p6 Ensembl1194,338,290 - 94,340,148 (+)Ensembl
Ensembl Acc Id: ENSMUST00000149867   ⟹   ENSMUSP00000120419
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1194,224,279 - 94,225,409 (+)Ensembl
GRCm38.p6 Ensembl1194,333,453 - 94,334,583 (+)Ensembl
RefSeq Acc Id: NM_027799   ⟹   NP_082075
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391194,218,827 - 94,232,673 (+)NCBI
GRCm381194,328,001 - 94,341,847 (+)ENTREZGENE
MGSCv371194,189,315 - 94,203,161 (+)RGD
Celera11103,946,715 - 103,960,619 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_146024   ⟹   NP_666136
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391194,218,827 - 94,230,335 (+)NCBI
GRCm381194,328,001 - 94,339,509 (+)NCBI
MGSCv371194,189,315 - 94,203,161 (+)RGD
Celera11103,946,715 - 103,960,619 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_082075   ⟸   NM_027799
- Peptide Label: isoform 1
- UniProtKB: Q8R595 (UniProtKB/Swiss-Prot),   Q5SUF0 (UniProtKB/Swiss-Prot),   Q9CU71 (UniProtKB/Swiss-Prot),   Q5SUE8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_666136   ⟸   NM_146024
- Peptide Label: isoform 2
- UniProtKB: Q5SUE8 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000061637   ⟸   ENSMUST00000051221
Ensembl Acc Id: ENSMUSP00000103448   ⟸   ENSMUST00000107818
Ensembl Acc Id: ENSMUSP00000120419   ⟸   ENSMUST00000149867
Ensembl Acc Id: ENSMUSP00000021227   ⟸   ENSMUST00000021227

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5SUE8-F1-model_v2 AlphaFold Q5SUE8 1-363 view protein structure

Promoters
RGD ID:6820381
Promoter ID:MM_KWN:9246
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:NM_027799,   NM_146024,   OTTMUST00000003388
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361194,188,486 - 94,189,742 (+)MPROMDB
RGD ID:6820382
Promoter ID:MM_KWN:9248
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000003391
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361194,198,966 - 94,199,466 (+)MPROMDB
RGD ID:8676200
Promoter ID:EPDNEW_M16130
Type:initiation region
Name:Ankrd40_1
Description:Mus musculus ankyrin repeat domain 40 , transcript variant 1,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381194,328,051 - 94,328,111EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1918702 AgrOrtholog
Ensembl Genes ENSMUSG00000020864 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000021227 ENTREZGENE
  ENSMUST00000021227.6 UniProtKB/Swiss-Prot
  ENSMUST00000051221.13 UniProtKB/Swiss-Prot
  ENSMUST00000107818 ENTREZGENE
  ENSMUST00000107818.9 UniProtKB/Swiss-Prot
  ENSMUST00000149867.2 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/Swiss-Prot
InterPro ANKRD40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ankyrin_rpt UniProtKB/Swiss-Prot
  Ankyrin_rpt-contain_sf UniProtKB/Swiss-Prot
KEGG Report mmu:71452 UniProtKB/Swiss-Prot
MGD MGI:1918702 ENTREZGENE
NCBI Gene 71452 ENTREZGENE
PANTHER ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR24192 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ank_4 UniProtKB/Swiss-Prot
PhenoGen Ankrd40 PhenoGen
PROSITE ANK_REP_REGION UniProtKB/Swiss-Prot
  ANK_REPEAT UniProtKB/Swiss-Prot
SMART ANK UniProtKB/Swiss-Prot
Superfamily-SCOP SSF48403 UniProtKB/Swiss-Prot
UniProt ANR40_MOUSE UniProtKB/Swiss-Prot
  B7ZC98_MOUSE UniProtKB/TrEMBL
  Q5SUE8 ENTREZGENE
  Q5SUF0 ENTREZGENE
  Q8R595 ENTREZGENE
  Q9CU71 ENTREZGENE
UniProt Secondary Q5SUF0 UniProtKB/Swiss-Prot
  Q8R595 UniProtKB/Swiss-Prot
  Q9CU71 UniProtKB/Swiss-Prot