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Gene: Atp6v1d (ATPase, H+ transporting, lysosomal V1 subunit D) Mus musculus

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Symbol:

Atp6v1d

Name:

ATPase, H+ transporting, lysosomal V1 subunit D

RGD ID:

1553446

MGI Page

MGI

Description:

Predicted to enable proton-transporting ATPase activity, rotational mechanism. Involved in synaptic vesicle lumen acidification. Part of proton-transporting V-type ATPase complex. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; integumental system; and sensory organ. Orthologous to human ATP6V1D (ATPase H+ transporting V1 subunit D).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

1110004P10Rik; Atp; Atp6m; ATPase, H+ transporting lysosomal (vacuolar proton pump); ATPase, H+ transporting, lysosomal 34kD, V1 subunit D; ATPase, H+ transporting, V1 subunit D; lysosomal 34kDa; V-ATPase 28 kDa accessory protein; V-ATPase subunit D; V-type proton ATPase subunit D; VA; vacuolar proton pump subunit D; VATD; Vm; Vma8

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ATP6V1D (ATPase H+ transporting V1 subunit D)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Atp6v1d (ATPase H+ transporting V1 subunit D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Atp6v1d (ATPase H+ transporting V1 subunit D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ATP6V1D (ATPase H+ transporting V1 subunit D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ATP6V1D (ATPase H+ transporting V1 subunit D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	LOC101968194 (V-type proton ATPase subunit D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ATP6V1D (ATPase H+ transporting V1 subunit D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ATP6V1D (ATPase H+ transporting V1 subunit D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Atp6v1d (ATPase H+ transporting V1 subunit D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Atp6v1d (ATPase H+ transporting V1 subunit D)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	ATP6V1D (ATPase H+ transporting V1 subunit D)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Danio rerio (zebrafish):	atp6v1d (ATPase H+ transporting V1 subunit D)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid\|ZFIN)
Saccharomyces cerevisiae (baker's yeast):	VMA8	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Vha36-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Vha36-3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	vha-14	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	atp6v1d	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	78,889,756 - 78,908,810 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	78,887,499 - 78,908,412 (-)	Ensembl		GRCm39 Ensembl
GRCm38	12	78,842,982 - 78,862,008 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	78,840,725 - 78,861,638 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	79,943,969 - 79,962,625 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	79,761,822 - 79,780,478 (-)	NCBI		MGSCv36	mm8
Celera	12	80,307,557 - 80,326,098 (-)	NCBI		Celera
Cytogenetic Map	12	C3	NCBI
cM Map	12	35.51	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Chemical and Drug Induced Liver Injury (ISO)

Experimental Liver Cirrhosis (ISO)

Leber congenital amaurosis 13 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (EXP)

1-naphthyl isothiocyanate (ISO)

1-nitropropane (ISO)

17alpha-ethynylestradiol (EXP)

2,2',4,4'-Tetrabromodiphenyl ether (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,4-diaminotoluene (ISO)

2,4-dinitrotoluene (ISO)

2,6-diaminotoluene (ISO)

2,6-dinitrotoluene (ISO)

2-acetamidofluorene (ISO)

2-hydroxypropanoic acid (ISO)

2-methylcholine (ISO)

2-nitro-p-phenylenediamine (ISO)

2-nitrofluorene (ISO)

2-nitropropane (ISO)

3H-1,2-dithiole-3-thione (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one (ISO)

4-acetylaminofluorene (ISO)

4-nitro-1,2-phenylenediamine (ISO)

acrolein (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

alpha-pinene (ISO)

anthracen-2-amine (ISO)

Aroclor 1254 (EXP)

arsenite(3-) (ISO)

benzo[a]pyrene (EXP)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

Brodifacoum (ISO)

cadmium dichloride (EXP,ISO)

caffeine (ISO)

captan (EXP)

chloropicrin (ISO)

clofibric acid (ISO)

cocaine (ISO)

copper(II) sulfate (ISO)

CU-O LINKAGE (ISO)

cyclosporin A (ISO)

deoxynivalenol (ISO)

dicrotophos (ISO)

diethylstilbestrol (ISO)

doxorubicin (ISO)

epoxiconazole (EXP)

ethanol (EXP)

ethyl methanesulfonate (ISO)

finasteride (ISO)

flutamide (ISO)

folic acid (EXP)

folpet (EXP)

furan (ISO)

gentamycin (ISO)

Heliotrine (ISO)

hydrazine (ISO)

hydrogen peroxide (ISO)

isotretinoin (ISO)

ivermectin (ISO)

ketoconazole (ISO)

methidathion (EXP)

methyl methanesulfonate (ISO)

N-nitrosodiethylamine (ISO)

N-nitrosodimethylamine (ISO)

N-nitrosomorpholine (ISO)

nefazodone (ISO)

ozone (ISO)

paracetamol (ISO)

perfluorooctanoic acid (ISO)

picoxystrobin (ISO)

pirinixic acid (ISO)

piroxicam (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

rac-lactic acid (ISO)

resveratrol (ISO)

rotenone (ISO)

silicon dioxide (EXP)

sodium arsenite (ISO)

sodium dichromate (EXP,ISO)

Soman (ISO)

tamoxifen (EXP)

temozolomide (ISO)

thimerosal (ISO)

thioacetamide (ISO)

thiram (ISO)

titanium dioxide (EXP)

trichloroethene (ISO)

trichostatin A (ISO)

triphenyl phosphate (ISO)

tunicamycin (ISO)

urethane (ISO)

valproic acid (EXP,ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cilium assembly (ISO,ISS)

protein localization to cilium (ISO,ISS)

synaptic vesicle lumen acidification (EXP,IDA,IMP)

Cellular Component

ATPase complex (ISO)

centrosome (ISO,ISS)

cilium (ISO,ISS)

clathrin-coated vesicle membrane (IEA)

extrinsic component of synaptic vesicle membrane (IEA,ISO)

membrane (ISO)

nucleoplasm (IEA,ISO)

plasma membrane (IEA,ISO)

proton-transporting V-type ATPase complex (IBA,IDA,ISO)

proton-transporting V-type ATPase, V1 domain (ISO)

vacuolar proton-transporting V-type ATPase, V1 domain (ISS)

Molecular Function

protein binding (ISO)

proton-transporting ATPase activity, rotational mechanism (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

oxidative phosphorylation pathway (IEA)

rheumatoid arthritis pathway (IEA)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal sinus arrhythmia (IEA)

cardiovascular system phenotype (IEA)

decreased locomotor activity (IEA)

decreased mean platelet volume (IEA)

embryonic lethality prior to organogenesis (IEA)

embryonic lethality prior to tooth bud stage (IEA)

increased heart rate variability (IEA)

increased lean body mass (IEA)

preweaning lethality, complete penetrance (IEA)

thrombocytosis (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Functional annotation of a full-length mouse cDNA collection.	Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2.	cDNA cloning, chromosomal localization and evolutionary analysis of mouse vacuolar ATPase subunit D, Atp6m.	Kennell JA, etal., Cytogenet Cell Genet 2001;92(3-4):337-41.
3.	MGDs mouse GO annotations	MGD data from the GO Consortium
4.	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
6.	Mouse MP Annotation Import Pipeline	RGD automated import pipeline
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:10349636	PMID:10725249	PMID:11042159	PMID:11076861	PMID:12477932	PMID:12527205	PMID:14610273	PMID:14681479	PMID:15489334	PMID:15782199	PMID:16141072
PMID:16141073	PMID:18752060	PMID:18799693	PMID:21267068	PMID:21873635	PMID:22794259	PMID:26442671	PMID:27368196	PMID:27480124	PMID:27626380	PMID:28793259	PMID:29111324
PMID:30562941	PMID:30595499	PMID:31235642	PMID:32325033	PMID:33340069	PMID:33601422	PMID:36288084	PMID:37142655	PMID:38355793

Genomics

Comparative Map Data

Atp6v1d
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	78,889,756 - 78,908,810 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	78,887,499 - 78,908,412 (-)	Ensembl		GRCm39 Ensembl
GRCm38	12	78,842,982 - 78,862,008 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	78,840,725 - 78,861,638 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	79,943,969 - 79,962,625 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	79,761,822 - 79,780,478 (-)	NCBI		MGSCv36	mm8
Celera	12	80,307,557 - 80,326,098 (-)	NCBI		Celera
Cytogenetic Map	12	C3	NCBI
cM Map	12	35.51	NCBI

ATP6V1D
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	67,337,872 - 67,359,804 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	67,294,371 - 67,360,265 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	67,804,589 - 67,826,521 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	66,874,342 - 66,896,344 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	14	66,874,342 - 66,896,344	NCBI
Celera	14	47,863,642 - 47,885,645 (-)	NCBI		Celera
Cytogenetic Map	14	q23.3	NCBI
HuRef	14	47,974,504 - 47,996,644 (-)	NCBI		HuRef
CHM1_1	14	67,743,271 - 67,765,404 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	14	61,544,996 - 61,566,929 (-)	NCBI		T2T-CHM13v2.0

Atp6v1d
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	103,389,778 - 103,405,346 (-)	NCBI		GRCr8
mRatBN7.2	6	97,656,725 - 97,672,295 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	97,656,576 - 97,672,303 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	98,086,262 - 98,101,815 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	98,385,424 - 98,400,977 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	97,772,371 - 97,787,931 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	102,032,271 - 102,047,754 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	102,032,276 - 102,047,758 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	111,407,085 - 111,421,779 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	101,479,417 - 101,494,826 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	101,482,872 - 101,498,282 (-)	NCBI
Celera	6	96,044,738 - 96,060,175 (-)	NCBI		Celera
Cytogenetic Map	6	q24	NCBI

Atp6v1d
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955466	2,854,889 - 2,869,950 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955466	2,855,597 - 2,869,319 (+)	NCBI	ChiLan1.0	ChiLan1.0

ATP6V1D
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	68,443,858 - 68,465,639 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	67,660,171 - 67,682,150 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	47,913,254 - 47,935,376 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	66,792,168 - 66,813,714 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

ATP6V1D
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	41,332,581 - 41,354,058 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	41,333,021 - 41,354,320 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	41,024,328 - 41,045,781 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	41,559,923 - 41,581,418 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	41,559,926 - 41,581,376 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	41,178,800 - 41,200,277 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	41,252,376 - 41,273,861 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	41,611,332 - 41,632,798 (-)	NCBI		UU_Cfam_GSD_1.0

LOC101968194
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	89,779,360 - 89,854,240 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936478	8,991,091 - 9,065,865 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ATP6V1D
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	91,064,396 - 91,084,913 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	91,065,998 - 91,084,908 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	97,375,524 - 97,394,503 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ATP6V1D
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	44,578,057 - 44,598,918 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	44,578,807 - 44,598,394 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666053	32,808,011 - 32,828,557 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Atp6v1d
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624734	33,640,839 - 33,657,745 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624734	33,640,842 - 33,669,471 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Atp6v1d
703 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	170
Count of miRNA genes:	145
Interacting mature miRNAs:	157
Transcripts:	ENSMUST00000021536
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
14746976	Manh73_m	mandible shape 73 (mouse)					12	65857131	99857131	Mouse
27226776	Tibl6_m	tibia length 6, 5 week (mouse)					12	60646786	92666774	Mouse
1301337	Cdcs8_m	cytokine deficiency colitis susceptibility 8 (mouse)			Not determined		12	64689083	98689229	Mouse
1300633	Cdcs7_m	cytokine deficiency colitis susceptibility 7 (mouse)			Not determined		12	64689083	98689229	Mouse
27226771	Tibl14_m	tibia length 14, 10 week (mouse)					12	68346774	98766259	Mouse
4142002	Tbqt3_m	tibia bone quality traits 3 (mouse)			Not determined		12	35285496	109936243	Mouse
12832727	Ahrq1_m	airway hyperresponsiveness QTL 1 (mouse)					12	54695910	82665939	Mouse
1558978	Cplaq10_m	circadian period of locomotor activity 10 (mouse)			Not determined		12	15341026	79040364	Mouse
1301574	Lmblgq5_m	limb length QTL 5 (mouse)			Not determined		12	17596447	80956883	Mouse
4141738	Tgq23_m	triglyceride QTL 23 (mouse)			Not determined			72112877	106112877	Mouse
13207568	Tcq14_m	total cholesterol QTL 14 (mouse)					12	11660001	97176774	Mouse
27226753	Femd7_m	femur midshaft diameter 7, 10 week (mouse)					12	9550000	84146774	Mouse
1357749	Vtbt13_m	vertebral trabecular bone trait 13 (mouse)			Not determined		12	53132002	87132145	Mouse
13524842	Ppiq10a_m	prepulse inhibition QTL 10a (mouse)					12	77512220	111512220	Mouse
1301046	Par3_m	pulmonary adenoma resistance 3 (mouse)			Not determined		12	63956708	97956883	Mouse
1357757	Lnopy2_m	lens opacity 2 (mouse)			Not determined		12	52846626	86846796	Mouse
1301689	Skull18_m	skull morphology 18 (mouse)			Not determined		12	73887422	107887526	Mouse
10043895	Bw20_m	body weight QTL 20 (mouse)			Not determined		12	62308252	96308252	Mouse
27226797	Scvln19_m	sacral vertebrae length 2, 16 week (mouse)					12	62146786	99466259	Mouse
1357479	Splwt1_m	spleen weight 1 (mouse)			Not determined		12	41693175	90887526	Mouse
10043948	Pbft6_m	percent body fat 6 (mouse)			Not determined		12	61205427	95205427	Mouse
1301926	Adip6_m	adiposity 6 (mouse)			Not determined		12	73887422	107887526	Mouse
27226793	Feml10_m	femur length 10, 5 week (mouse)					12	68346774	113363620	Mouse
27226728	Tibl20_m	tibia length 20, 16 week (mouse)					12	59146786	93866774	Mouse
1301476	Pbwg12_m	postnatal body weight growth 12 (mouse)			Not determined		12	62040164	96040364	Mouse

Markers in Region

Atp6m

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	12	78,843,027 - 78,843,509	UniSTS	GRCm38
MGSCv37	12	79,944,014 - 79,944,496	UniSTS	GRCm37
Celera	12	80,307,602 - 80,308,084	UniSTS
Cytogenetic Map	12	C3	UniSTS
cM Map	12	36.0	UniSTS

D12Wsu1e

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	12	78,841,074 - 78,841,274	UniSTS	GRCm38
MGSCv37	12	79,942,061 - 79,942,261	UniSTS	GRCm37
Celera	12	80,305,653 - 80,305,853	UniSTS
Cytogenetic Map	12	C3	UniSTS
cM Map	12	36.0	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_023721	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_030246956	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_036157632	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC123869	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF298810	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK003446	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK146129	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK146448	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK147910	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK150981	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK152367	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK153250	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK165761	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK193761	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC033457	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BY096594	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466590	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000021536 ⟹ ENSMUSP00000021536

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	12	78,887,499 - 78,908,412 (-)	Ensembl
GRCm38.p6 Ensembl	12	78,840,725 - 78,861,638 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000219316

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	12	78,889,776 - 78,892,165 (-)	Ensembl
GRCm38.p6 Ensembl	12	78,843,002 - 78,845,391 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000219377

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	12	78,895,970 - 78,897,290 (-)	Ensembl
GRCm38.p6 Ensembl	12	78,849,196 - 78,850,516 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000219891

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	12	78,905,448 - 78,908,269 (-)	Ensembl
GRCm38.p6 Ensembl	12	78,858,674 - 78,861,495 (-)	Ensembl

RefSeq Acc Id:

NM_023721 ⟹ NP_076210

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	12	78,889,756 - 78,908,412 (-)	NCBI
GRCm38	12	78,842,982 - 78,861,638 (-)	ENTREZGENE
MGSCv37	12	79,943,969 - 79,962,625 (-)	RGD
Celera	12	80,307,557 - 80,326,098 (-)	RGD
cM Map	12		ENTREZGENE

Sequence:

show sequence

AGTCCTCGCCCAACAGGAACCGGAAGTGGGAACCGGTTTCCTGGTTGCCTCTTAGCAACGCAGT
TGTCAAGTGACCCGGTCAGCTGACTCCCGTGGAGGCGGGCACTGGGGTAACCGGTTCTGGAGGT
GTTGCGGTCCCGATTGTCTCGCCGGGGGGCCCGAGCCGAGTCACCGTCAGGATGTCGGGCAAAG
ACCGGATTGAAATCTTCCCTTCGCGAATGGCACAGACCATCATGAAGGCTCGATTAAAAGGAGC
ACAGACTGGTCGAAACCTTCTGAAGAAAAAGTCTGATGCCTTAACTCTTCGATTTCGACAGATC
CTGAAGAAGATAATAGAGACTAAAATGCTGATGGGTGAAGTGATGAGAGAAGCTGCCTTCTCAT
TGGCTGAGGCCAAATTCACAGCAGGGGACTTCAGCACCACAGTTATCCAAAATGTAAATAAAGC
CCAAGTGAAGATCAGAGCAAAGAAAGACAATGTAGCAGGTGTTACCTTGCCAGTGTTTGAACAT
TACCACGAAGGAACTGACAGCTATGAACTGACCGGTTTAGCCAGAGGTGGGGAGCAGCTGGCTA
AACTAAAGCGGAATTATGCCAAAGCAGTGGAACTACTGGTGGAACTGGCTTCCCTGCAGACTTC
CTTTGTTACCCTGGATGAAGCCATTAAAATCACCAACAGGCGTGTTAATGCCATTGAGCATGTC
ATTATTCCCCGGATTGAACGCACCCTTGCCTATATCATCACAGAACTGGATGAGAGAGAGCGAG
AAGAATTCTATAGGTTAAAGAAAATACAGGAGAAGAAAAAGATTATCAAGGAAAAATTTGAGAA
GGACTTGGAGCGGCGGAGAGCAGCTGGAGAGGTGATGGAGCCTGCCAACCTGCTGGCTGAAGAG
AAGGATGAAGACCTGCTGTTCGAATAGCTGCCCTCGTCTGCTCCCTTCAGACTGAGCATCAGCT
CCATGTTAACTCAGTGTGTAGGTTCGGTATGTGTGGATATTTATTTTGGCATATGAATTTCTCT
GGCTGTAAGATTTATCAGAATGCCTTGTAAGACTTTTTCCTGCATCATAATTCAGCAACCCGAG
ATTTGCAAAACCTGCCCAGCAACCTACAGAATTTCCTCTGTGAAAAGTGTCATATTATTCTATT
TACAATTGTTTGACCGATCTGTTTAAAACTTTAGGAAATATGTACTATAAACATTCATGGTCGC
AGGCAAAGGCTGTGAGCAACCTTCCTTCCTACCCACTTGGAAACCTTGCCGCTGTTGTCCGAGG
CTGTACAGCCATTGTGTTCCTATGGCTCAATTCTTCACCTATTTTTCTTTGCACGATATGTGTT
TGTAATGGAAGCAGTTCTGCCCATTTAAATGTGACCTATGAACAGAGTAAAATGATTTTAAAAA
CA

hide sequence

RefSeq Acc Id:

XM_030246956 ⟹ XP_030102816

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	12	78,889,756 - 78,908,787 (-)	NCBI
GRCm38	12	78,842,982 - 78,862,008 (-)	NCBI

Sequence:

show sequence

GGATCCTTCGTTGCCACTAACCATAGAGTCTTGGTCCTCCTAATATGGGCGGTGTGAACCAAGG
GACGAGCTGAAGAGTCACTGCCCCTGGTATTTATAGATTTTTTTGCGGAGGGAACTTGCTAGGT
TTAAAGGAGAGTCCTCGCCCAACAGGAACCGGAAGTGGGAACCGGTTTCCTGGTTGCCTCTTAG
CAACGCAGTTGTCAAGTGACCCGGTCAGCTGACTCCCGTGGAGGCGGGCACTGGGGTAACCGGT
TCTGGAGGTGTTGCGGTCCCGATTGTCTCGCCGGGGGGCCCGAGCCGAGTCACCGTCAGGATGT
CGGGCAAAGACCGGATTGAAATCTTCCCTTCGCGAATGGCACAGACCATCATGAAGGCTCGATT
AAAAGGAGCACAGACTGGTCGAAACCTTCTGAAGAAAAAGTCTGATGCCTTAACTCTTCGATTT
CGACAGATCCTGAAGAAGATAATAGAGACTAAAATGCTGATGGGTGAAGTGATGAGAGAAGCTG
CCTTCTCATTGGCTGAGGCCAAATTCACAGCAGGGGACTTCAGCACCACAGTTATCCAAAATGT
AAATAAAGCCCAAGTGAAGATCAGAGCAAAGAAAGACAATGTAGCAGGTGTTACCTTGCCAGTG
TTTGAACATTACCACGAAGGAACTGACAGCTATGAACTGACCGGTTTAGCCAGAGGTGGGGAGC
AGCTGGCTAAACTAAAGCGGAATTATGCCAAAGCAGTGGAACTACTGGTGGAACTGGCTTCCCT
GCAGACTTCCTTTGTTACCCTGGATGAAGCCATTAAAATCACCAACAGGCGTGTTAATGCCATT
GAGCATGTCATTATTCCCCGGATTGAACGCACCCTTGCCTATATCATCACAGAACTGGATGAGA
GAGAGCGAGAAGAATTCTATAGGTTAAAGAAAATACAGGAGAAGAAAAAGATTATCAAGGAAAA
ATTTGAGAAGGACTTGGAGCGGCGGAGAGCAGCTGGAGAGGTGATGGAGCCTGCCAACCTGCTG
GCTGAAGAGAAGGATGAAGACCTGCTGTTCGAATAGCTGCCCTCGTCTGCTCCCTTCAGACTGA
GCATCAGCTCCATGTTAACTCAGTGTGTAGGTTCGGTATGTGTGGATATTTATTTTGGCATATG
AATTTCTCTGGCTGTAAGATTTATCAGAATGCCTTGTAAGACTTTTTCCTGCATCATAATTCAG
CAACCCGAGATTTGCAAAACCTGCCCAGCAACCTACAGAATTTCCTCTGTGAAAAGTGTCATAT
TATTCTATTTACAATTGTTTGACCGATCTGTTTAAAACTTTAGGAAATATGTACTATAAACATT
CATGGTCGCAGGCAAAGGCTGTGAGCAACCTTCCTTCCTACCCACTTGGAAACCTTGCCGCTGT
TGTCCGAGGCTGTACAGCCATTGTGTTCCTATGGCTCAATTCTTCACCTATTTTTCTTTGCACG
ATATGTGTTTGTAATGGAAGCAGTTCTGCCCATTTAAATGTGACCTATGAACAGAGTAAAATGA
TTTTAAAAACA

hide sequence

RefSeq Acc Id:

XM_036157632 ⟹ XP_036013525

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	12	78,889,756 - 78,908,810 (-)	NCBI

Sequence:

show sequence

ACTGCGCAGGCGCCGACAGAAAAGGATCCTTCGTTGCCACTAACCATAGAGTCTTGGTCCTCCT
AATATGGGCGGTGTGAACCAAGGGACGAGCTGAAGAGTCACTGCCCCTGGTATTTATAGATTTT
TTTGCGGAGGGAACTTGCTAGGTTTAAAGGAGAGGGCACAGACCATCATGAAGGCTCGATTAAA
AGGAGCACAGACTGGTCGAAACCTTCTGAAGAAAAAGTCTGATGCCTTAACTCTTCGATTTCGA
CAGATCCTGAAGAAGATAATAGAGACTAAAATGCTGATGGGTGAAGTGATGAGAGAAGCTGCCT
TCTCATTGGCTGAGGCCAAATTCACAGCAGGGGACTTCAGCACCACAGTTATCCAAAATGTAAA
TAAAGCCCAAGTGAAGATCAGAGCAAAGAAAGACAATGTAGCAGGTGTTACCTTGCCAGTGTTT
GAACATTACCACGAAGGAACTGACAGCTATGAACTGACCGGTTTAGCCAGAGGTGGGGAGCAGC
TGGCTAAACTAAAGCGGAATTATGCCAAAGCAGTGGAACTACTGGTGGAACTGGCTTCCCTGCA
GACTTCCTTTGTTACCCTGGATGAAGCCATTAAAATCACCAACAGGCGTGTTAATGCCATTGAG
CATGTCATTATTCCCCGGATTGAACGCACCCTTGCCTATATCATCACAGAACTGGATGAGAGAG
AGCGAGAAGAATTCTATAGGTTAAAGAAAATACAGGAGAAGAAAAAGATTATCAAGGAAAAATT
TGAGAAGGACTTGGAGCGGCGGAGAGCAGCTGGAGAGGTGATGGAGCCTGCCAACCTGCTGGCT
GAAGAGAAGGATGAAGACCTGCTGTTCGAATAGCTGCCCTCGTCTGCTCCCTTCAGACTGAGCA
TCAGCTCCATGTTAACTCAGTGTGTAGGTTCGGTATGTGTGGATATTTATTTTGGCATATGAAT
TTCTCTGGCTGTAAGATTTATCAGAATGCCTTGTAAGACTTTTTCCTGCATCATAATTCAGCAA
CCCGAGATTTGCAAAACCTGCCCAGCAACCTACAGAATTTCCTCTGTGAAAAGTGTCATATTAT
TCTATTTACAATTGTTTGACCGATCTGTTTAAAACTTTAGGAAATATGTACTATAAACATTCAT
GGTCGCAGGCAAAGGCTGTGAGCAACCTTCCTTCCTACCCACTTGGAAACCTTGCCGCTGTTGT
CCGAGGCTGTACAGCCATTGTGTTCCTATGGCTCAATTCTTCACCTATTTTTCTTTGCACGATA
TGTGTTTGTAATGGAAGCAGTTCTGCCCATTTAAATGTGACCTATGAACAGAGTAAAATGATTT
TAAAAACA

hide sequence

Protein Sequences


Protein RefSeqs	NP_076210	(Get FASTA)	NCBI Sequence Viewer
	XP_030102816	(Get FASTA)	NCBI Sequence Viewer
	XP_036013525	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAG30225	(Get FASTA)	NCBI Sequence Viewer
	AAH33457	(Get FASTA)	NCBI Sequence Viewer
	BAB22795	(Get FASTA)	NCBI Sequence Viewer
	BAE26921	(Get FASTA)	NCBI Sequence Viewer
	BAE27180	(Get FASTA)	NCBI Sequence Viewer
	BAE28222	(Get FASTA)	NCBI Sequence Viewer
	BAE30008	(Get FASTA)	NCBI Sequence Viewer
	BAE31157	(Get FASTA)	NCBI Sequence Viewer
	BAE31841	(Get FASTA)	NCBI Sequence Viewer
	BAE38369	(Get FASTA)	NCBI Sequence Viewer
	EDL02624	(Get FASTA)	NCBI Sequence Viewer
	EDL02625	(Get FASTA)	NCBI Sequence Viewer
	EDL02626	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000021536
	ENSMUSP00000021536.8
GenBank Protein	P57746	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_076210 ⟸ NM_023721

- UniProtKB:

P57746 (UniProtKB/Swiss-Prot), Q3U861 (UniProtKB/TrEMBL), Q3U684 (UniProtKB/TrEMBL), Q3UJH5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGEVMRE
AAFSLAEAKFTAGDFSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSYELTGLARGG
EQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNAIEHVIIPRIERTLAYIITELD
EREREEFYRLKKIQEKKKIIKEKFEKDLERRRAAGEVMEPANLLAEEKDEDLLFE

hide sequence

RefSeq Acc Id:	XP_030102816 ⟸ XM_030246956
- Peptide Label:	isoform X1
- UniProtKB:	P57746 (UniProtKB/Swiss-Prot), Q3U861 (UniProtKB/TrEMBL), Q3U684 (UniProtKB/TrEMBL), Q3UJH5 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSMUSP00000021536 ⟸ ENSMUST00000021536

RefSeq Acc Id:	XP_036013525 ⟸ XM_036157632
- Peptide Label:	isoform X2
- UniProtKB:	Q3U684 (UniProtKB/TrEMBL), Q3UJH5 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P57746-F1-model_v2	AlphaFold	P57746	1-247	view protein structure

Promoters

RGD ID:

8678620

Promoter ID:

EPDNEW_M17340

Type:

initiation region

Name:

Atp6v1d_1

Description:

Mus musculus ATPase, H+ transporting, lysosomal V1 subunit D, mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	12	78,861,553 - 78,861,613	EPDNEW

RGD ID:

6822750

Promoter ID:

MM_KWN:12022

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, 3T3L1_Day6, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

NM_023721, OTTMUST00000077865

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	12	79,961,986 - 79,963,157 (-)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1921084	AgrOrtholog
Ensembl Genes	ENSMUSG00000021114	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000021536	ENTREZGENE
	ENSMUST00000021536.9	UniProtKB/Swiss-Prot
Gene3D-CATH	1.10.287.3240	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	V_ATPase_D	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:73834	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD	MGI:1921084	ENTREZGENE
NCBI Gene	73834	ENTREZGENE
PANTHER	PTHR11671	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	V-TYPE PROTON ATPASE SUBUNIT D	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	ATP-synt_D	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Atp6v1d	PhenoGen
UniProt	P57746	ENTREZGENE
	Q3U684	ENTREZGENE, UniProtKB/TrEMBL
	Q3U861	ENTREZGENE, UniProtKB/TrEMBL
	Q3UJH5	ENTREZGENE, UniProtKB/TrEMBL
	Q3UK81_MOUSE	UniProtKB/TrEMBL
	Q9CTI8_MOUSE	UniProtKB/TrEMBL
	VATD_MOUSE	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)

Mammalian Phenotype

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)

Mammalian Phenotype