Sgms1 (sphingomyelin synthase 1) - Rat Genome Database

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Gene: Sgms1 (sphingomyelin synthase 1) Mus musculus
Analyze
Symbol: Sgms1
Name: sphingomyelin synthase 1
RGD ID: 1553375
MGI Page MGI
Description: Enables ceramide phosphoethanolamine synthase activity and sphingomyelin synthase activity. Involved in sphingomyelin biosynthetic process. Acts upstream of or within ceramide biosynthetic process. Predicted to be located in Golgi membrane and Golgi trans cisterna. Is expressed in several structures, including alimentary system; central nervous system; ear; limb; and respiratory system. Orthologous to human SGMS1 (sphingomyelin synthase 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 9530058O11Rik; AI841905; C80702; MGC30540; Mob; phosphatidylcholine:ceramide cholinephosphotransferase 1; SM; Sms1; SMS1b; SMS1g; Sor1; Tmem23; transmembrane protein 23
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391932,100,127 - 32,367,285 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1932,100,127 - 32,367,114 (-)EnsemblGRCm39 Ensembl
GRCm381932,122,727 - 32,389,885 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1932,122,727 - 32,389,714 (-)EnsemblGRCm38mm10GRCm38
MGSCv371932,197,217 - 32,462,944 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361932,188,727 - 32,314,032 (-)NCBIMGSCv36mm8
Celera1932,909,133 - 33,168,704 (-)NCBICelera
Cytogenetic Map19C1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dichloroethane  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP,ISO)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
8-Br-cAMP  (ISO)
acetamide  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
aflatoxin B1  (EXP)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
ammonium chloride  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (EXP)
arsane  (EXP,ISO)
arsenic atom  (EXP,ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (EXP)
bisphenol A  (ISO)
bortezomib  (ISO)
cadmium atom  (ISO)
calcium silicate  (EXP)
carbamazepine  (ISO)
carbon nanotube  (EXP)
CGP 52608  (ISO)
chloroprene  (EXP)
chrysene  (EXP)
ciguatoxin CTX1B  (EXP)
crocidolite asbestos  (EXP)
cyclosporin A  (ISO)
decabromodiphenyl ether  (ISO)
dexamethasone  (ISO)
diazinon  (ISO)
dibutyl phthalate  (EXP)
diuron  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
fulvestrant  (ISO)
gentamycin  (ISO)
heptachlor  (ISO)
indometacin  (ISO)
isoprenaline  (EXP)
leflunomide  (ISO)
lithocholic acid  (EXP)
melphalan  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
oxaliplatin  (ISO)
ozone  (EXP,ISO)
paracetamol  (EXP,ISO)
PCB138  (EXP)
pentachlorophenol  (EXP)
perfluorooctanoic acid  (EXP)
phenobarbital  (EXP,ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
SB 431542  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
T-2 toxin  (ISO)
tamoxifen  (EXP)
testosterone  (ISO)
tetrachloromethane  (EXP)
tetracycline  (EXP)
tetraphene  (EXP)
titanium dioxide  (EXP)
topotecan  (ISO)
tungsten  (EXP)
valproic acid  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)
zoledronic acid  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal ceramide level  (IAGP)
abnormal cytokine level  (IAGP)
abnormal cytokine secretion  (IAGP)
abnormal lipid level  (IAGP)
abnormal pancreatic islet morphology  (IAGP)
abnormal Sertoli cell barrier function  (IAGP)
abnormal Sertoli cell barrier morphology  (IAGP)
abnormal spermatid morphology  (IAGP)
abnormal spermatogenesis  (IAGP)
abnormal sphingolipid level  (IAGP)
abnormal sphingomyelin level  (IAGP)
absent acrosome  (IAGP)
absent sperm flagellum  (IAGP)
decreased body weight  (IAGP)
decreased circulating insulin level  (IAGP)
decreased circulating interleukin-6 level  (IAGP)
decreased circulating tumor necrosis factor level  (IAGP)
decreased insulin secretion  (IAGP)
decreased interleukin-6 secretion  (IAGP)
decreased litter size  (IAGP)
decreased liver weight  (IAGP)
decreased male germ cell number  (IAGP)
decreased mean corpuscular hemoglobin  (IEA)
decreased plasmalogen level  (IAGP)
decreased total body fat amount  (IEA)
decreased tumor necrosis factor secretion  (IAGP)
decreased unsaturated fatty acids level  (IAGP)
decreased white adipose tissue amount  (IAGP)
hyperglycemia  (IAGP)
impaired glucose tolerance  (IAGP)
increased circulating alkaline phosphatase level  (IEA)
increased circulating creatinine level  (IEA)
increased circulating magnesium level  (IEA)
increased grip strength  (IEA)
increased insulin sensitivity  (IAGP)
increased lean body mass  (IEA)
increased mean platelet volume  (IEA)
increased testis apoptosis  (IAGP)
male infertility  (IAGP)
oxidative stress  (IAGP)
premature death  (IAGP)
reduced male fertility  (IAGP)
seminiferous tubule degeneration  (IAGP)
thrombocytopenia  (IEA)
tremors  (IEA)
References

References - curated
# Reference Title Reference Citation
1. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
6. MOB-1 and TNF-alpha interact to induce microvascular lung injury. Rabinovici R, etal., Shock 2002 Sep;18(3):261-4.
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10512203   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11544199   PMID:12477932   PMID:12904583   PMID:14610273   PMID:14681479  
PMID:14685263   PMID:14976195   PMID:15489334   PMID:15747579   PMID:15840001   PMID:16141072   PMID:16141073   PMID:16226406   PMID:16508036   PMID:16879426   PMID:17967808   PMID:18799693  
PMID:20637730   PMID:21115496   PMID:21203393   PMID:21267068   PMID:21677750   PMID:21856749   PMID:21873635   PMID:22209789   PMID:22345277   PMID:22580896   PMID:22641779   PMID:22688512  
PMID:23096701   PMID:23593476   PMID:25084761   PMID:25269881   PMID:25605874   PMID:26274505   PMID:27391427   PMID:27788151   PMID:27892528   PMID:29044125   PMID:30243987   PMID:30305392  
PMID:30561621   PMID:30728831   PMID:31262710   PMID:31847800   PMID:32554809   PMID:33500344   PMID:33545384   PMID:34469734   PMID:34478523   PMID:34774525   PMID:35230716  


Genomics

Comparative Map Data
Sgms1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391932,100,127 - 32,367,285 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1932,100,127 - 32,367,114 (-)EnsemblGRCm39 Ensembl
GRCm381932,122,727 - 32,389,885 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1932,122,727 - 32,389,714 (-)EnsemblGRCm38mm10GRCm38
MGSCv371932,197,217 - 32,462,944 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361932,188,727 - 32,314,032 (-)NCBIMGSCv36mm8
Celera1932,909,133 - 33,168,704 (-)NCBICelera
Cytogenetic Map19C1NCBI
SGMS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381050,305,600 - 50,625,184 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1050,305,586 - 50,625,163 (-)EnsemblGRCh38hg38GRCh38
GRCh371052,065,360 - 52,383,716 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361051,735,351 - 52,053,743 (-)NCBINCBI36Build 36hg18NCBI36
Build 341051,735,351 - 52,053,743NCBI
Celera1075,221,199 - 75,539,540 (-)NCBICelera
Cytogenetic Map10q11.23NCBI
HuRef1046,064,748 - 46,384,168 (-)NCBIHuRef
CHM1_11052,347,208 - 52,665,557 (-)NCBICHM1_1
T2T-CHM13v2.01051,153,786 - 51,472,591 (-)NCBIT2T-CHM13v2.0
Sgms1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21229,996,673 - 230,259,591 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1229,998,119 - 230,259,603 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1238,362,330 - 238,621,023 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01245,292,015 - 245,550,709 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01238,127,826 - 238,388,826 (-)NCBIRnor_WKY
Rnor_6.01250,692,448 - 250,951,685 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1250,691,370 - 250,951,697 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01257,923,300 - 258,182,214 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41236,133,441 - 236,396,631 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11236,319,654 - 236,381,276 (-)NCBI
Celera1227,118,516 - 227,377,318 (-)NCBICelera
Cytogenetic Map1q52NCBI
Sgms1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554255,784,751 - 5,822,488 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554255,507,905 - 5,819,357 (+)NCBIChiLan1.0ChiLan1.0
SGMS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan11062,625,068 - 62,939,176 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01046,960,159 - 47,273,353 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11049,076,976 - 49,392,937 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1049,076,984 - 49,116,154 (-)Ensemblpanpan1.1panPan2
SGMS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12637,243,388 - 37,472,806 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2637,244,900 - 37,348,802 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2637,128,050 - 37,357,239 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02638,775,863 - 39,005,440 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2638,776,907 - 39,026,132 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12636,683,424 - 36,912,359 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02636,264,203 - 36,493,530 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02637,503,839 - 37,732,954 (-)NCBIUU_Cfam_GSD_1.0
Sgms1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721376,808,901 - 77,088,722 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367351,943,352 - 1,984,141 (+)EnsemblSpeTri2.0
SpeTri2.0NW_0049367351,702,754 - 1,984,141 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SGMS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1499,147,272 - 99,185,082 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11499,147,266 - 99,458,111 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214107,987,111 - 108,238,352 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SGMS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1980,524,115 - 80,646,332 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl980,524,055 - 80,562,945 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604841,180,929 - 41,498,073 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sgms1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479113,097,808 - 13,146,544 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479113,096,268 - 13,490,220 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Sgms1
7611 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3098
Count of miRNA genes:800
Interacting mature miRNAs:1107
Transcripts:ENSMUST00000099514, ENSMUST00000124012, ENSMUST00000124483, ENSMUST00000126332, ENSMUST00000131768, ENSMUST00000134415, ENSMUST00000141252, ENSMUST00000141655, ENSMUST00000142618, ENSMUST00000149107, ENSMUST00000149934, ENSMUST00000151289, ENSMUST00000151822, ENSMUST00000152340
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301271Datd_mdopamine transporter density (mouse)Not determined19132340234Mouse
4142406Pbctlp1_mperipheral blood cytotoxic T lymphocyte percentage 1 (mouse)Not determined132875174Mouse
1300904Chab5_mcholesterol absorption 5 (mouse)Not determined19165376435653927Mouse
26884385Skwq14_mskull length QTL 14, 16 week (mouse)19325000035877400Mouse
1301800Faq10_mfluctuating asymmetry QTL 10 (mouse)Not determined19332321637323348Mouse
1300923Bits4_mbitterness sensitivity 4 (mouse)Not determined19332321637323348Mouse
1302126Skull26_mskull morphology 26 (mouse)Not determined19332321637323348Mouse
1300591Pas3_mpulmonary adenoma susceptibility 3 (mouse)Not determined19332321637323348Mouse
11039522Tbbr4_mTrypanosoma brucei brucei response 4 (mouse)19531332639313470Mouse
1301228Iba4_minduction of brown adipocytes 4 (mouse)Not determined19930571543305821Mouse
1302019Pgia23_mproteoglycan induced arthritis 23 (mouse)Not determined19978745343787602Mouse
14928311Manh85_mmandible shape 85 (mouse)191191478945914789Mouse
10413881Moe2_mmodifier of epilepsy 2 (mouse)191492301648923138Mouse
1301336Alcp23_malcohol preference locus 23 (mouse)Not determined191591260749912719Mouse
1301633Alcp24_malcohol preference locus 24 (mouse)Not determined191591260749912719Mouse
1302063Eae19_mexperimental allergic encephalomyelitis 19 (mouse)Not determined191829516252295381Mouse
1302004Lfp2_mlong free running period 2 (mouse)Not determined191829516252295381Mouse
4142343Moen2_mmodifier of engrailed QTL 2 (mouse)Not determined192023431454234461Mouse
10412251Mnp_mmodifier of Niemann Pick type C1 (mouse)Not determined192023431454234461Mouse
4141659Pbwg20_mpostnatal body weight growth 20 (mouse)Not determined192137870555378928Mouse
1357596Tgct3_mtesticular germ cell tumor 3 (mouse)Not determined192198409132912719Mouse
1558876W3q14_mweight 3 weeks QTL 14 (mouse)Not determined192231332653911504Mouse
12790634Ebm1_mEpidermolysis Bullosa modifier 1 (mouse)192498843958988439Mouse
1302123Tlsr8_mthymic lymphoma suppressor region 8 (mouse)Not determined192513600242388916Mouse
1301451Ath16_matherosclerosis 16 (mouse)Not determined192542691759427005Mouse
13506250Renmq1_mrenal mercury accumulation QTL 1 (mouse)192738559461385705Mouse
1357568Tgct4_mtesticular germ cell tumor 4 (mouse)Not determined192777198535295381Mouse
4141138Femwf11_mfemur work to failure 11 (mouse)Not determined2814034861420004Mouse
1300683Fembm7_mfemoral bone morphometry 7 (mouse)Not determined193014122461420004Mouse
1301942Pas13_mpulmonary adenoma susceptibility 13 (mouse)Not determined193014123161420004Mouse
1301410Cd8mts6_mCD8 memory T cell subset 6 (mouse)Not determined193014123161420004Mouse
1300856Nobq2_mNew Zealand obese QTL 2 (mouse)Not determined193089788061420004Mouse

Markers in Region
D19Mit134  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381932,315,855 - 32,315,976UniSTSGRCm38
MGSCv371932,390,345 - 32,390,466UniSTSGRCm37
Celera1933,095,961 - 33,096,082UniSTS
Cytogenetic Map19C1UniSTS
cM Map1924.0UniSTS
Whitehead Genetic1924.0UniSTS
Whitehead_YAC19 UniSTS
AI841905  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381932,122,978 - 32,123,115UniSTSGRCm38
MGSCv371932,197,468 - 32,197,605UniSTSGRCm37
Celera1932,909,384 - 32,909,521UniSTS
Cytogenetic Map19C1UniSTS
Whitehead/MRC_RH19314.44UniSTS
A007I09  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381932,122,796 - 32,122,915UniSTSGRCm38
MGSCv371932,197,286 - 32,197,405UniSTSGRCm37
Celera1932,909,202 - 32,909,321UniSTS
Cytogenetic Map19C1UniSTS
BF055346  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381932,123,912 - 32,124,016UniSTSGRCm38
MGSCv371932,198,402 - 32,198,506UniSTSGRCm37
Celera1932,910,318 - 32,910,422UniSTS
Cytogenetic Map19C1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001168525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001168526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001362423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_144792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006526818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006526819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006526820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011247202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011247203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011247205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017318105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001782565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001782566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003952764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003952765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003952766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003952767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004940128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004940129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC113485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC115752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC124323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC158130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK076554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK079254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK082974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK133967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY509044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC019443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC076618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC085298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP768024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KP710942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KP710943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KR020019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KR020020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KR020021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000099514   ⟹   ENSMUSP00000097114
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1932,100,127 - 32,365,912 (-)Ensembl
GRCm38.p6 Ensembl1932,122,727 - 32,388,512 (-)Ensembl
RefSeq Acc Id: ENSMUST00000124012
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1932,135,656 - 32,367,114 (-)Ensembl
GRCm38.p6 Ensembl1932,158,256 - 32,389,714 (-)Ensembl
RefSeq Acc Id: ENSMUST00000124483
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1932,197,987 - 32,266,979 (-)Ensembl
GRCm38.p6 Ensembl1932,220,587 - 32,289,579 (-)Ensembl
RefSeq Acc Id: ENSMUST00000126332
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1932,200,718 - 32,216,226 (-)Ensembl
GRCm38.p6 Ensembl1932,223,318 - 32,238,826 (-)Ensembl
RefSeq Acc Id: ENSMUST00000131768
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1932,137,699 - 32,254,326 (-)Ensembl
GRCm38.p6 Ensembl1932,160,299 - 32,276,926 (-)Ensembl
RefSeq Acc Id: ENSMUST00000134415   ⟹   ENSMUSP00000115785
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1932,101,547 - 32,137,623 (-)Ensembl
GRCm38.p6 Ensembl1932,124,147 - 32,160,223 (-)Ensembl
RefSeq Acc Id: ENSMUST00000141252
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1932,266,679 - 32,365,863 (-)Ensembl
GRCm38.p6 Ensembl1932,289,279 - 32,388,463 (-)Ensembl
RefSeq Acc Id: ENSMUST00000141655
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1932,137,570 - 32,300,629 (-)Ensembl
GRCm38.p6 Ensembl1932,160,170 - 32,323,229 (-)Ensembl
RefSeq Acc Id: ENSMUST00000142618   ⟹   ENSMUSP00000117336
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1932,100,130 - 32,326,716 (-)Ensembl
GRCm38.p6 Ensembl1932,122,730 - 32,349,316 (-)Ensembl
RefSeq Acc Id: ENSMUST00000149107
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1932,137,558 - 32,216,212 (-)Ensembl
GRCm38.p6 Ensembl1932,160,158 - 32,238,812 (-)Ensembl
RefSeq Acc Id: ENSMUST00000149934
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1932,196,157 - 32,225,409 (-)Ensembl
GRCm38.p6 Ensembl1932,218,757 - 32,248,009 (-)Ensembl
RefSeq Acc Id: ENSMUST00000151289   ⟹   ENSMUSP00000123395
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1932,100,128 - 32,188,413 (-)Ensembl
GRCm38.p6 Ensembl1932,122,728 - 32,211,013 (-)Ensembl
RefSeq Acc Id: ENSMUST00000151822   ⟹   ENSMUSP00000114683
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1932,137,461 - 32,173,828 (-)Ensembl
GRCm38.p6 Ensembl1932,160,061 - 32,196,428 (-)Ensembl
RefSeq Acc Id: ENSMUST00000152340   ⟹   ENSMUSP00000119869
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1932,101,545 - 32,254,352 (-)Ensembl
GRCm38.p6 Ensembl1932,124,145 - 32,276,952 (-)Ensembl
RefSeq Acc Id: ENSMUST00000236410   ⟹   ENSMUSP00000157976
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1932,101,162 - 32,254,364 (-)Ensembl
GRCm38.p6 Ensembl1932,123,762 - 32,276,964 (-)Ensembl
RefSeq Acc Id: NM_001168525   ⟹   NP_001161997
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391932,100,127 - 32,326,716 (-)NCBI
GRCm381932,122,727 - 32,349,316 (-)NCBI
MGSCv371932,197,217 - 32,462,944 (-)RGD
Celera1932,909,133 - 33,168,704 (-)RGD
cM Map19 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001168526   ⟹   NP_001161998
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391932,100,127 - 32,188,413 (-)NCBI
GRCm381932,122,727 - 32,211,013 (-)NCBI
MGSCv371932,197,217 - 32,462,944 (-)RGD
Celera1932,909,133 - 33,168,704 (-)RGD
cM Map19 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001362423   ⟹   NP_001349352
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391932,100,127 - 32,365,449 (-)NCBI
GRCm381932,122,727 - 32,388,049 (-)NCBI
Sequence:
RefSeq Acc Id: NM_144792   ⟹   NP_659041
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391932,100,127 - 32,365,912 (-)NCBI
GRCm381932,122,727 - 32,388,512 (-)NCBI
MGSCv371932,197,217 - 32,462,944 (-)RGD
Celera1932,909,133 - 33,168,704 (-)RGD
cM Map19 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006526818   ⟹   XP_006526881
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391932,100,232 - 32,216,390 (-)NCBI
GRCm381932,122,832 - 32,239,391 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006526819   ⟹   XP_006526882
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391932,100,232 - 32,254,364 (-)NCBI
GRCm381932,122,730 - 32,276,953 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006526820   ⟹   XP_006526883
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391932,100,232 - 32,173,922 (-)NCBI
GRCm381932,122,832 - 32,196,437 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011247202   ⟹   XP_011245504
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391932,100,130 - 32,367,285 (-)NCBI
GRCm381932,122,730 - 32,389,885 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011247203   ⟹   XP_011245505
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391932,100,232 - 32,365,849 (-)NCBI
GRCm381932,122,832 - 32,388,449 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011247205   ⟹   XP_011245507
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391932,133,978 - 32,365,700 (-)NCBI
GRCm381932,156,579 - 32,388,300 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017318105   ⟹   XP_017173594
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391932,133,986 - 32,365,886 (-)NCBI
GRCm381932,156,587 - 32,388,486 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030250831   ⟹   XP_030106691
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391932,100,130 - 32,367,110 (-)NCBI
GRCm381932,122,730 - 32,389,732 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030250832   ⟹   XP_030106692
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391932,100,130 - 32,299,826 (-)NCBI
GRCm381932,122,730 - 32,322,426 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030250833   ⟹   XP_030106693
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391932,100,130 - 32,300,045 (-)NCBI
GRCm381932,122,730 - 32,322,573 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030250835   ⟹   XP_030106695
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391932,100,232 - 32,201,200 (-)NCBI
GRCm381932,122,832 - 32,223,800 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030250836   ⟹   XP_030106696
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391932,100,130 - 32,300,631 (-)NCBI
GRCm381932,122,832 - 32,323,277 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030250837   ⟹   XP_030106697
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391932,100,130 - 32,254,353 (-)NCBI
GRCm381932,122,730 - 32,276,953 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001782565
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391932,100,130 - 32,365,886 (-)NCBI
GRCm381932,122,730 - 32,388,486 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001782566
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391932,100,130 - 32,365,886 (-)NCBI
GRCm381932,122,730 - 32,388,486 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003952764
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391932,101,381 - 32,365,700 (-)NCBI
GRCm381932,122,730 - 32,388,300 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003952765
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391932,101,381 - 32,254,355 (-)NCBI
GRCm381932,122,730 - 32,277,129 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003952766
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391932,101,381 - 32,188,550 (-)NCBI
GRCm381932,122,730 - 32,211,188 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003952767
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391932,100,130 - 32,188,436 (-)NCBI
GRCm381932,122,730 - 32,211,128 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004940128
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391932,100,130 - 32,365,700 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004940129
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391932,100,130 - 32,365,700 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001161997 (Get FASTA)   NCBI Sequence Viewer  
  NP_001161998 (Get FASTA)   NCBI Sequence Viewer  
  NP_001349352 (Get FASTA)   NCBI Sequence Viewer  
  NP_659041 (Get FASTA)   NCBI Sequence Viewer  
  XP_006526881 (Get FASTA)   NCBI Sequence Viewer  
  XP_006526882 (Get FASTA)   NCBI Sequence Viewer  
  XP_006526883 (Get FASTA)   NCBI Sequence Viewer  
  XP_011245504 (Get FASTA)   NCBI Sequence Viewer  
  XP_011245505 (Get FASTA)   NCBI Sequence Viewer  
  XP_011245507 (Get FASTA)   NCBI Sequence Viewer  
  XP_017173594 (Get FASTA)   NCBI Sequence Viewer  
  XP_030106691 (Get FASTA)   NCBI Sequence Viewer  
  XP_030106692 (Get FASTA)   NCBI Sequence Viewer  
  XP_030106693 (Get FASTA)   NCBI Sequence Viewer  
  XP_030106695 (Get FASTA)   NCBI Sequence Viewer  
  XP_030106696 (Get FASTA)   NCBI Sequence Viewer  
  XP_030106697 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH19443 (Get FASTA)   NCBI Sequence Viewer  
  AAH85298 (Get FASTA)   NCBI Sequence Viewer  
  AAS90514 (Get FASTA)   NCBI Sequence Viewer  
  BAC36390 (Get FASTA)   NCBI Sequence Viewer  
  BAC37590 (Get FASTA)   NCBI Sequence Viewer  
  BAC38717 (Get FASTA)   NCBI Sequence Viewer  
  BAE21960 (Get FASTA)   NCBI Sequence Viewer  
  BAE27428 (Get FASTA)   NCBI Sequence Viewer  
  BAE29428 (Get FASTA)   NCBI Sequence Viewer  
  BAE30173 (Get FASTA)   NCBI Sequence Viewer  
  BAE31117 (Get FASTA)   NCBI Sequence Viewer  
  BAE31966 (Get FASTA)   NCBI Sequence Viewer  
  BAE35856 (Get FASTA)   NCBI Sequence Viewer  
  EDL41718 (Get FASTA)   NCBI Sequence Viewer  
  EDL41719 (Get FASTA)   NCBI Sequence Viewer  
  EDL41720 (Get FASTA)   NCBI Sequence Viewer  
  Q8VCQ6 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_659041   ⟸   NM_144792
- UniProtKB: Q8C652 (UniProtKB/Swiss-Prot),   Q8VCQ6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001161997   ⟸   NM_001168525
- UniProtKB: Q8C652 (UniProtKB/Swiss-Prot),   Q8VCQ6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001161998   ⟸   NM_001168526
- UniProtKB: Q8C652 (UniProtKB/Swiss-Prot),   Q8VCQ6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006526882   ⟸   XM_006526819
- Peptide Label: isoform X1
- UniProtKB: Q8C652 (UniProtKB/Swiss-Prot),   Q8VCQ6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006526881   ⟸   XM_006526818
- Peptide Label: isoform X1
- UniProtKB: Q8C652 (UniProtKB/Swiss-Prot),   Q8VCQ6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006526883   ⟸   XM_006526820
- Peptide Label: isoform X1
- UniProtKB: Q8C652 (UniProtKB/Swiss-Prot),   Q8VCQ6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011245504   ⟸   XM_011247202
- Peptide Label: isoform X1
- UniProtKB: Q8C652 (UniProtKB/Swiss-Prot),   Q8VCQ6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011245505   ⟸   XM_011247203
- Peptide Label: isoform X1
- UniProtKB: Q8C652 (UniProtKB/Swiss-Prot),   Q8VCQ6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011245507   ⟸   XM_011247205
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017173594   ⟸   XM_017318105
- Peptide Label: isoform X3
- UniProtKB: Q8VCQ6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001349352   ⟸   NM_001362423
- UniProtKB: Q8C652 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030106691   ⟸   XM_030250831
- Peptide Label: isoform X1
- UniProtKB: Q8C652 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030106693   ⟸   XM_030250833
- Peptide Label: isoform X1
- UniProtKB: Q8C652 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030106692   ⟸   XM_030250832
- Peptide Label: isoform X1
- UniProtKB: Q8C652 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030106697   ⟸   XM_030250837
- Peptide Label: isoform X1
- UniProtKB: Q8C652 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030106696   ⟸   XM_030250836
- Peptide Label: isoform X1
- UniProtKB: Q8C652 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030106695   ⟸   XM_030250835
- Peptide Label: isoform X1
- UniProtKB: Q8C652 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSMUSP00000097114   ⟸   ENSMUST00000099514
RefSeq Acc Id: ENSMUSP00000157976   ⟸   ENSMUST00000236410
RefSeq Acc Id: ENSMUSP00000119869   ⟸   ENSMUST00000152340
RefSeq Acc Id: ENSMUSP00000114683   ⟸   ENSMUST00000151822
RefSeq Acc Id: ENSMUSP00000123395   ⟸   ENSMUST00000151289
RefSeq Acc Id: ENSMUSP00000115785   ⟸   ENSMUST00000134415
RefSeq Acc Id: ENSMUSP00000117336   ⟸   ENSMUST00000142618
Protein Domains
SAM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8VCQ6-F1-model_v2 AlphaFold Q8VCQ6 1-419 view protein structure

Promoters
RGD ID:13679262
Promoter ID:EPDNEW_M23780
Type:initiation region
Name:Sgms1_1
Description:Mus musculus sphingomyelin synthase 1 , transcript variant 2,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M23781  EPDNEW_M23783  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381932,210,995 - 32,211,055EPDNEW
RGD ID:6830402
Promoter ID:MM_KWN:26843
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Lung
Transcripts:OTTMUST00000083879
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361932,234,339 - 32,234,839 (-)MPROMDB
RGD ID:6830405
Promoter ID:MM_KWN:26844
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:OTTMUST00000083886
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361932,270,761 - 32,271,261 (-)MPROMDB
RGD ID:6830403
Promoter ID:MM_KWN:26845
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_001168526
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361932,285,206 - 32,285,706 (-)MPROMDB
RGD ID:6847626
Promoter ID:MM_ACW:26568
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:SGMS1.VCSEP07,   STARFU.ASEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361932,315,421 - 32,315,921 (-)MPROMDB
RGD ID:13679266
Promoter ID:EPDNEW_M23781
Type:single initiation site
Name:Sgms1_3
Description:Mus musculus sphingomyelin synthase 1 , transcript variant 2,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M23780  EPDNEW_M23783  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381932,338,275 - 32,338,335EPDNEW
RGD ID:13679268
Promoter ID:EPDNEW_M23783
Type:multiple initiation site
Name:Sgms1_2
Description:Mus musculus sphingomyelin synthase 1 , transcript variant 2,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M23780  EPDNEW_M23781  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381932,389,692 - 32,389,752EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2444110 AgrOrtholog
Ensembl Genes ENSMUSG00000040451 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000097114 ENTREZGENE
  ENSMUSP00000097114.4 UniProtKB/Swiss-Prot
  ENSMUSP00000114683.2 UniProtKB/TrEMBL
  ENSMUSP00000115785.2 UniProtKB/TrEMBL
  ENSMUSP00000117336 ENTREZGENE
  ENSMUSP00000117336.2 UniProtKB/Swiss-Prot
  ENSMUSP00000119869 ENTREZGENE
  ENSMUSP00000119869.2 UniProtKB/Swiss-Prot
  ENSMUSP00000123395 ENTREZGENE
  ENSMUSP00000123395.2 UniProtKB/Swiss-Prot
  ENSMUSP00000157976.2 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000099514 ENTREZGENE
  ENSMUST00000099514.10 UniProtKB/Swiss-Prot
  ENSMUST00000134415.2 UniProtKB/TrEMBL
  ENSMUST00000142618 ENTREZGENE
  ENSMUST00000142618.8 UniProtKB/Swiss-Prot
  ENSMUST00000151289 ENTREZGENE
  ENSMUST00000151289.9 UniProtKB/Swiss-Prot
  ENSMUST00000151822.2 UniProtKB/TrEMBL
  ENSMUST00000152340 ENTREZGENE
  ENSMUST00000152340.8 UniProtKB/Swiss-Prot
  ENSMUST00000236410 ENTREZGENE
  ENSMUST00000236410.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.50 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro SAM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM/pointed_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sphingomyelin_synth-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sphingomyelin_synth-like_dom UniProtKB/Swiss-Prot
KEGG Report mmu:208449 UniProtKB/Swiss-Prot
MGD MGI:2444110 ENTREZGENE
NCBI Gene 208449 ENTREZGENE
PANTHER PHOSPHATIDYLCHOLINE:CERAMIDE CHOLINEPHOSPHOTRANSFERASE 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR21290 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PAP2_C UniProtKB/Swiss-Prot
PhenoGen Sgms1 PhenoGen
PROSITE SAM_DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47769 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A494BA77_MOUSE UniProtKB/TrEMBL
  D3YV54_MOUSE UniProtKB/TrEMBL
  E3W996_MOUSE UniProtKB/TrEMBL
  Q8C652 ENTREZGENE
  Q8VCQ6 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q3UIS8 UniProtKB/Swiss-Prot
  Q5J3R0 UniProtKB/Swiss-Prot
  Q8C464 UniProtKB/Swiss-Prot
  Q8C583 UniProtKB/Swiss-Prot
  Q8C652 UniProtKB/Swiss-Prot