4933434E20Rik (RIKEN cDNA 4933434E20 gene) - Rat Genome Database

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Gene: 4933434E20Rik (RIKEN cDNA 4933434E20 gene) Mus musculus
Analyze
Symbol: 4933434E20Rik
Name: RIKEN cDNA 4933434E20 gene
RGD ID: 1553185
MGI Page MGI
Description: Involved in phagocytosis. Acts upstream of or within in utero embryonic development. Predicted to be located in Golgi apparatus; cytosol; and mitochondrion. Orthologous to human C1orf43 (chromosome 1 open reading frame 43).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 5730552F22Rik; AI462154; hypothetical protein LOC99650; NICE-3; NS5ATP4; uncharacterized protein C1orf43 homolog
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm36501   Gm49400   Gm6478  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39389,958,941 - 89,969,754 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl389,960,211 - 89,973,376 (+)EnsemblGRCm39 Ensembl
GRCm39 Ensembl389,958,943 - 89,970,648 (+)EnsemblGRCm39 Ensembl
GRCm38390,051,636 - 90,063,341 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl390,051,636 - 90,063,341 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl390,052,904 - 90,066,069 (+)EnsemblGRCm38mm10GRCm38
MGSCv37389,856,739 - 89,866,369 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36390,138,764 - 90,148,374 (+)NCBIMGSCv36mm8
Celera390,089,349 - 90,098,980 (+)NCBICelera
Cytogenetic Map3F1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal aortic valve cusp morphology  (IEA)
abnormal atrioventricular cushion morphology  (IEA)
abnormal brain internal capsule morphology  (IEA)
abnormal cerebral cortex morphology  (IEA)
abnormal ductus venosus valve morphology  (IEA)
abnormal ductus venosus valve topology  (IEA)
abnormal dural venous sinus morphology  (IEA)
abnormal eye muscle morphology  (IEA)
abnormal forebrain morphology  (IEA)
abnormal heart atrium morphology  (IEA)
abnormal heart position or orientation  (IEA)
abnormal heart right atrium morphology  (IEA)
abnormal hindbrain morphology  (IEA)
abnormal hypoglossal nerve topology  (IEA)
abnormal inferior vena cava valve morphology  (IEA)
abnormal infrahyoid muscle connection  (IEA)
abnormal interatrial septum morphology  (IEA)
abnormal larynx morphology  (IEA)
abnormal lens morphology  (IEA)
abnormal Mullerian duct morphology  (IEA)
abnormal pectinate muscle morphology  (IEA)
abnormal pineal gland morphology  (IEA)
abnormal pulmonary valve cusp morphology  (IEA)
abnormal vertebral arch morphology  (IEA)
abnormal vertebral artery topology  (IEA)
abnormal vertebral body morphology  (IEA)
abnormal vitelline vein connection  (IEA)
abnormal Wolffian duct connection  (IEA)
absent costovertebral joint  (IEA)
absent ductus venosus valve  (IEA)
absent hypoglossal canal  (IEA)
absent hypoglossal nerve  (IEA)
absent lobe of thyroid gland  (IEA)
absent segment of posterior cerebral artery  (IEA)
absent vertebral arch  (IEA)
anal atresia  (IEA)
arteriovenous malformation  (IEA)
blood in lymph vessels  (IEA)
decreased circulating cholesterol level  (IEA)
decreased circulating fructosamine level  (IEA)
decreased circulating HDL cholesterol level  (IEA)
decreased circulating serum albumin level  (IEA)
dilated liver sinusoidal space  (IEA)
dorsal root ganglion hypoplasia  (IEA)
double ureter  (IEA)
embryo cyst  (IEA)
enlarged lymphatic vessel  (IEA)
fused dorsal root ganglion  (IEA)
fusion of vertebral arches  (IEA)
herniated liver  (IEA)
heterochrony  (IEA)
increased circulating alanine transaminase level  (IEA)
intestinal/bowel diverticulum  (IEA)
muscular ventricular septal defect  (IEA)
overriding aortic valve  (IEA)
perimembraneous ventricular septal defect  (IEA)
persistent trigeminal artery  (IEA)
preweaning lethality, complete penetrance  (IEA)
reduced sympathetic cervical ganglion size  (IEA)
retro-esophageal left subclavian artery  (IEA)
retroesophageal right subclavian artery  (IEA)
right aortic arch  (IEA)
small superior cervical ganglion  (IEA)
subcutaneous edema  (IEA)
thin hypoglossal nerve  (IEA)
urinary bladder hypoplasia  (IEA)
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073   PMID:18799693   PMID:21267068  
PMID:21677750   PMID:21873635   PMID:27996060   PMID:28185240   PMID:29539633   PMID:31540829   PMID:32554809  


Genomics

Comparative Map Data
4933434E20Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39389,958,941 - 89,969,754 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl389,960,211 - 89,973,376 (+)EnsemblGRCm39 Ensembl
GRCm39 Ensembl389,958,943 - 89,970,648 (+)EnsemblGRCm39 Ensembl
GRCm38390,051,636 - 90,063,341 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl390,051,636 - 90,063,341 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl390,052,904 - 90,066,069 (+)EnsemblGRCm38mm10GRCm38
MGSCv37389,856,739 - 89,866,369 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36390,138,764 - 90,148,374 (+)NCBIMGSCv36mm8
Celera390,089,349 - 90,098,980 (+)NCBICelera
Cytogenetic Map3F1NCBI
C1orf43
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381154,206,720 - 154,220,590 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1154,206,696 - 154,220,637 (-)EnsemblGRCh38hg38GRCh38
GRCh371154,179,196 - 154,193,066 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361152,445,807 - 152,459,897 (-)NCBINCBI36Build 36hg18NCBI36
Celera1127,250,901 - 127,264,989 (-)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1125,542,511 - 125,556,929 (-)NCBIHuRef
CHM1_11155,575,492 - 155,589,582 (-)NCBICHM1_1
T2T-CHM13v2.01153,343,930 - 153,357,787 (-)NCBIT2T-CHM13v2.0
Ns5atp4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22175,494,355 - 175,507,276 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2175,494,304 - 175,510,663 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2182,640,818 - 182,653,711 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.02180,663,205 - 180,676,098 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.02175,263,805 - 175,276,717 (+)NCBIRnor_WKY
Rnor_6.02189,400,696 - 189,413,614 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2189,400,696 - 189,413,608 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02208,833,094 - 208,846,652 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42182,274,696 - 182,287,567 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12182,224,801 - 182,237,669 (+)NCBI
Celera2169,433,428 - 169,446,172 (+)NCBICelera
Cytogenetic Map2q34NCBI
CUNH1orf43
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955545760,684 - 767,896 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955545760,857 - 767,801 (-)NCBIChiLan1.0ChiLan1.0
C1H1orf43
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1195,348,769 - 95,362,209 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01129,562,110 - 129,575,866 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11133,181,364 - 133,190,038 (-)NCBIpanpan1.1PanPan1.1panPan2
C7H1orf43
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1743,015,099 - 43,033,989 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl743,015,268 - 43,033,974 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha742,505,476 - 42,524,372 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0742,885,637 - 42,904,410 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl742,885,631 - 42,906,153 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1742,664,352 - 42,683,237 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0742,717,598 - 42,736,276 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0743,001,738 - 43,020,628 (+)NCBIUU_Cfam_GSD_1.0
CUNH1orf43
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505824,875,753 - 24,883,755 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365803,906,135 - 3,914,298 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049365803,902,345 - 3,914,293 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C4H1orf43
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl495,519,992 - 95,530,846 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1495,520,003 - 95,530,856 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CUNH1orf43
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1209,601,210 - 9,617,238 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660388,961,315 - 8,975,705 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in 4933434E20Rik
241 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1712
Count of miRNA genes:665
Interacting mature miRNAs:819
Transcripts:ENSMUST00000029552, ENSMUST00000068798, ENSMUST00000159064, ENSMUST00000159202, ENSMUST00000160640, ENSMUST00000161874, ENSMUST00000161918, ENSMUST00000162114, ENSMUST00000162390, ENSMUST00000162595
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)340954435115793649Mouse
26884380Skwq1_mskull length QTL 1, 5 week (mouse)343954435101607316Mouse
26884378Skwq6_mskull length QTL 6, 10 week (mouse)351907421102307316Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
11039519Ltpr3_mLeishmania tropica response 3 (mouse)356704102100464137Mouse
12880419V125Dq4_mvitamin D active form serum level QTL 4 (mouse)35890730792907307Mouse
4141294Bmd24_mbone mineral density 24 (mouse)Not determined36174006195740241Mouse
1301971Cia5_mcollagen induced arthritis QTL 5 (mouse)Not determined366046658100046795Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
11251721Ewc3_methanol withdrawal and consumption 3 (mouse)369568554103568554Mouse
1301791Char4_mP. chabaudi malaria resistance QTL 4 (mouse)Not determined369625509100655290Mouse
1301422Sle11_msystematic lupus erythematosus susceptibility 11 (mouse)Not determined370208904104209042Mouse
11049572Lmr11c_mleishmaniasis resistance 11c (mouse)372139967106140094Mouse
1300982Lmr11_mleishmaniasis resistance 11 (mouse)Not determined372139967106140094Mouse
1300595Tmevd2_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 2 (mouse)Not determined375463302109463549Mouse
1301392Eae3_msusceptibility to experimental allergic encephalomyelitis 3 (mouse)Not determined379548730113548837Mouse
1301947Pcfm3_mperiosteal circumference and femur length 3 (mouse)Not determined381084652115084797Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382147043116147184Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383463991117464137Mouse
11039510Ltpr3d_mLeishmania tropica response 3d (mouse)383463991117464137Mouse
11039511Ltpr3c_mLeishmania tropica response 3c (mouse)383463991117464137Mouse
11039507Ltpr3g_mLeishmania tropica response 3g (mouse)383463991117464137Mouse
11039508Ltpr3f_mLeishmania tropica response 3f (mouse)383463991117464137Mouse
11039509Ltpr3e_mLeishmania tropica response 3e (mouse)383463991117464137Mouse
11039512Ltpr3b_mLeishmania tropica response 3b (mouse)383463991117464137Mouse
1301272Cfsw1_mcystic fibrosis survival to weaning 1 (mouse)Not determined383882912117883044Mouse
4142099Cq3_mcholesterol QTL 3 (mouse)Not determined384888918118889067Mouse
14746984Manh54_mmandible shape 54 (mouse)385289152119289152Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387208904125316236Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387228015121228015Mouse
4142178Ctrq2_mC. trachomatis resistance QTL 2 (mouse)Not determined389139967137453008Mouse

Markers in Region
AI462154  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3F1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001287086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001287087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_025762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_027500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC163616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK009362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK017833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK034749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK051238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY533135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB850680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC018438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC022598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC027190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG091444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM935139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY278541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000029552   ⟹   ENSMUSP00000029552
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl389,960,144 - 89,966,404 (+)Ensembl
GRCm38.p6 Ensembl390,052,837 - 90,059,097 (+)Ensembl
RefSeq Acc Id: ENSMUST00000068798   ⟹   ENSMUSP00000066840
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl389,960,178 - 89,969,749 (+)Ensembl
GRCm38.p6 Ensembl390,052,871 - 90,062,442 (+)Ensembl
RefSeq Acc Id: ENSMUST00000159064   ⟹   ENSMUSP00000124554
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl389,958,943 - 89,969,325 (+)Ensembl
GRCm38.p6 Ensembl390,051,636 - 90,062,018 (+)Ensembl
RefSeq Acc Id: ENSMUST00000159202
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl389,960,136 - 89,965,958 (+)Ensembl
GRCm38.p6 Ensembl390,052,829 - 90,058,651 (+)Ensembl
RefSeq Acc Id: ENSMUST00000160640   ⟹   ENSMUSP00000124028
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl389,960,121 - 89,970,648 (+)Ensembl
GRCm38.p6 Ensembl390,052,814 - 90,063,341 (+)Ensembl
RefSeq Acc Id: ENSMUST00000161874
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl389,960,902 - 89,966,174 (+)Ensembl
GRCm38.p6 Ensembl390,053,595 - 90,058,867 (+)Ensembl
RefSeq Acc Id: ENSMUST00000161918   ⟹   ENSMUSP00000123740
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl389,960,178 - 89,969,752 (+)Ensembl
GRCm38.p6 Ensembl390,052,871 - 90,062,445 (+)Ensembl
RefSeq Acc Id: ENSMUST00000162114   ⟹   ENSMUSP00000124822
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl389,960,149 - 89,968,301 (+)Ensembl
GRCm38.p6 Ensembl390,052,842 - 90,060,994 (+)Ensembl
RefSeq Acc Id: ENSMUST00000162390
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl389,965,952 - 89,969,603 (+)Ensembl
GRCm38.p6 Ensembl390,058,645 - 90,062,296 (+)Ensembl
RefSeq Acc Id: ENSMUST00000162595
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl389,960,161 - 89,961,001 (+)Ensembl
GRCm38.p6 Ensembl390,052,854 - 90,053,694 (+)Ensembl
RefSeq Acc Id: ENSMUST00000239076   ⟹   ENSMUSP00000159150
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl389,960,211 - 89,973,179 (+)Ensembl
GRCm38.p6 Ensembl390,052,904 - 90,065,872 (+)Ensembl
RefSeq Acc Id: ENSMUST00000239082   ⟹   ENSMUSP00000159175
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl389,966,050 - 89,973,376 (+)Ensembl
GRCm38.p6 Ensembl390,058,743 - 90,066,069 (+)Ensembl
RefSeq Acc Id: NM_001287086   ⟹   NP_001274015
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39389,960,235 - 89,969,754 (+)NCBI
GRCm38390,052,802 - 90,063,341 (+)NCBI
Celera390,088,168 - 90,099,874 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001287087   ⟹   NP_001274016
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39389,958,941 - 89,969,754 (+)NCBI
GRCm38390,051,636 - 90,063,341 (+)NCBI
Celera390,088,168 - 90,099,874 (+)NCBI
Sequence:
RefSeq Acc Id: NM_025762   ⟹   NP_080038
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39389,960,235 - 89,969,754 (+)NCBI
GRCm38390,052,802 - 90,063,341 (+)NCBI
MGSCv37389,856,739 - 89,866,369 (+)RGD
Celera390,088,168 - 90,099,874 (+)NCBI
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_027500   ⟹   NP_081776
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39389,960,235 - 89,966,174 (+)NCBI
GRCm38390,052,802 - 90,058,867 (+)NCBI
MGSCv37389,856,739 - 89,866,369 (+)RGD
Celera390,088,168 - 90,099,874 (+)NCBI
cM Map3 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_081776   ⟸   NM_027500
- Peptide Label: isoform 2
- UniProtKB: Q8R092 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_080038   ⟸   NM_025762
- Peptide Label: isoform 1
- UniProtKB: Q9CYB6 (UniProtKB/Swiss-Prot),   Q8R092 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001274016   ⟸   NM_001287087
- Peptide Label: isoform 1
- UniProtKB: Q9CYB6 (UniProtKB/Swiss-Prot),   Q8R092 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001274015   ⟸   NM_001287086
- Peptide Label: isoform 3
- UniProtKB: Q05D39 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000124554   ⟸   ENSMUST00000159064
RefSeq Acc Id: ENSMUSP00000029552   ⟸   ENSMUST00000029552
RefSeq Acc Id: ENSMUSP00000066840   ⟸   ENSMUST00000068798
RefSeq Acc Id: ENSMUSP00000159175   ⟸   ENSMUST00000239082
RefSeq Acc Id: ENSMUSP00000159150   ⟸   ENSMUST00000239076
RefSeq Acc Id: ENSMUSP00000124028   ⟸   ENSMUST00000160640
RefSeq Acc Id: ENSMUSP00000124822   ⟸   ENSMUST00000162114
RefSeq Acc Id: ENSMUSP00000123740   ⟸   ENSMUST00000161918

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8R092-F1-model_v2 AlphaFold Q8R092 1-253 view protein structure

Promoters
RGD ID:6834020
Promoter ID:MM_KWN:34997
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:NM_001165983,   NM_001165984,   NM_001165985,   NM_001165986,   NM_001165987,   NM_001165988,   NM_025762,   NM_027500,   NM_028475,   NM_153489,   UC008QAQ.1,   UC008QAW.1,   UC008QAZ.1,   UC008QBB.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36389,855,576 - 89,857,012 (-)MPROMDB
RGD ID:6881296
Promoter ID:EPDNEW_M4099
Type:multiple initiation site
Name:4933434E20Rik_2
Description:Mus musculus RIKEN cDNA 4933434E20 gene , transcript variant3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4101  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38390,051,543 - 90,051,603EPDNEW
RGD ID:6881300
Promoter ID:EPDNEW_M4101
Type:single initiation site
Name:4933434E20Rik_1
Description:Mus musculus RIKEN cDNA 4933434E20 gene , transcript variant3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4099  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38390,052,928 - 90,052,988EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1914027 AgrOrtholog
Ensembl Genes ENSMUSG00000027942 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSMUSG00000118504 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000029552 ENTREZGENE
  ENSMUSP00000029552.7 UniProtKB/Swiss-Prot
  ENSMUSP00000066840.7 UniProtKB/TrEMBL
  ENSMUSP00000123740.2 UniProtKB/TrEMBL
  ENSMUSP00000124028 ENTREZGENE
  ENSMUSP00000124028.2 UniProtKB/Swiss-Prot
  ENSMUSP00000124554 ENTREZGENE
  ENSMUSP00000124554.2 UniProtKB/Swiss-Prot
  ENSMUSP00000124822.2 UniProtKB/Swiss-Prot
  ENSMUSP00000159150.2 UniProtKB/Swiss-Prot
  ENSMUSP00000159175.2 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000029552 ENTREZGENE
  ENSMUST00000029552.13 UniProtKB/Swiss-Prot
  ENSMUST00000068798.13 UniProtKB/TrEMBL
  ENSMUST00000159064 ENTREZGENE
  ENSMUST00000159064.8 UniProtKB/Swiss-Prot
  ENSMUST00000160640 ENTREZGENE
  ENSMUST00000160640.8 UniProtKB/Swiss-Prot
  ENSMUST00000161918.3 UniProtKB/TrEMBL
  ENSMUST00000162114.8 UniProtKB/Swiss-Prot
  ENSMUST00000239076.2 UniProtKB/Swiss-Prot
  ENSMUST00000239082.2 UniProtKB/TrEMBL
InterPro C1orf43 UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
KEGG Report mmu:99650 UniProtKB/Swiss-Prot
MGD MGI:1914027 ENTREZGENE
NCBI Gene 99650 ENTREZGENE
PANTHER PROTEIN C1ORF43 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR21425 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam NICE-3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen 4933434E20Rik PhenoGen
UniProt A0A5F8MQ10_MOUSE UniProtKB/TrEMBL
  CA043_MOUSE UniProtKB/Swiss-Prot
  E0CYZ4_MOUSE UniProtKB/TrEMBL
  H7BX33_MOUSE UniProtKB/TrEMBL
  Q05D39 ENTREZGENE, UniProtKB/TrEMBL
  Q8R092 ENTREZGENE
  Q9CYB6 ENTREZGENE
UniProt Secondary Q3UBD8 UniProtKB/Swiss-Prot
  Q8BII4 UniProtKB/Swiss-Prot
  Q8BIP7 UniProtKB/Swiss-Prot
  Q8R240 UniProtKB/Swiss-Prot
  Q9CV59 UniProtKB/Swiss-Prot
  Q9CYB6 UniProtKB/Swiss-Prot