Nr1i3 (nuclear receptor subfamily 1, group I, member 3) - Rat Genome Database

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Gene: Nr1i3 (nuclear receptor subfamily 1, group I, member 3) Mus musculus
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Symbol: Nr1i3
Name: nuclear receptor subfamily 1, group I, member 3
RGD ID: 1552629
MGI Page MGI
Description: Enables DNA binding activity. Acts upstream of or within negative regulation of DNA-templated transcription. Located in cytosol and nucleus. Is expressed in several structures, including genitourinary system; gut; heart; liver; and thymus. Orthologous to human NR1I3 (nuclear receptor subfamily 1 group I member 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AA209988; AI551208; C; CA; CAR; CAR-beta; Care2; constitutive androstane receptor; constitutively transactivates RAREs; ESTM3; ESTM32; MB67; mC; MGC107281; nuclear receptor subfamily 1 group I member 3; orphan nuclear receptor MB67
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391171,041,503 - 171,046,414 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1171,041,539 - 171,048,270 (+)EnsemblGRCm39 Ensembl
GRCm381171,213,934 - 171,218,845 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1171,213,970 - 171,220,701 (+)EnsemblGRCm38mm10GRCm38
MGSCv371173,144,101 - 173,148,975 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361173,050,645 - 173,055,519 (+)NCBIMGSCv36mm8
Celera1173,662,106 - 173,666,983 (+)NCBICelera
Cytogenetic Map1H3NCBI
cM Map179.21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-artemisinin  (EXP,ISO)
(-)-anisomycin  (EXP,ISO)
(E)-azobenzene  (ISO)
(E,E)-germacrone  (EXP)
1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane  (ISO)
1,1,1-Trichloro-2-(4-hydroxyphenyl)-2-(4-methoxyphenyl)ethane  (ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (EXP,ISO)
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
1,2-dihydrostilbene  (ISO)
1,3-Diphenylpropane  (ISO)
1,4-dichlorobenzene  (EXP)
1-\{2-[(4-chlorobenzyl)sulfanyl]-2-(2,4-dichlorophenyl)ethyl\}-1H-imidazole  (ISO)
1-Amino-2,4-dibromoanthraquinone  (EXP)
1-benzofuran  (EXP)
1-benzylpiperazine  (ISO)
1-Hydroxypyrene  (ISO)
1-naphthol  (ISO)
1-naphthyl isothiocyanate  (EXP,ISO)
1-tert-Butoxy-2-propanol  (EXP)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP,ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,2'-Dihydroxy-4-methoxybenzophenone  (ISO)
2,2-(2-Chlorophenyl-4'-chlorophenyl)-1,1-dichloroethene  (EXP,ISO)
2,3',5-trichlorobiphenyl  (ISO)
2,3,3',4,4',5-Hexachlorobiphenyl  (EXP)
2,3,4,3',4'-Pentachlorobiphenyl  (EXP)
2,3,4,4'-tetrachlorobiphenyl  (ISO)
2,3,4,5-Tetrachloro-4'-biphenylol  (ISO)
2,3,4,5-tetrachlorobiphenyl  (ISO)
2,3,5,6-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4'-dichlorobiphenyl  (ISO)
2,4,4',6-tetrachlorobiphenyl  (ISO)
2,4,4'-trichlorobiphenyl  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP)
2,4-Dihydroxybenzophenone  (ISO)
2,4-dinitrotoluene  (ISO)
2,5-dichlorobiphenyl  (ISO)
2,6-di-tert-butyl-4-methylphenol  (ISO)
2-(tert-butylimino)-5-phenyl-3-(propan-2-yl)-1,3,5-thiadiazinan-4-one  (ISO)
2-chlorobiphenyl  (ISO)
2-Hydroxy-2',3',4',5,5'-pentachlorobiphenyl  (ISO)
2-hydroxypropanoic acid  (ISO)
2-tert-butylhydroquinone  (ISO)
2-tert-Butylphenol  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,5-diethoxycarbonyl-1,4-dihydrocollidine  (EXP)
3,6-diaminoacridine  (ISO)
3-chlorobiphenyl  (ISO)
3-methylcholanthrene  (ISO)
3-Pentadecylphenol  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (EXP)
4-amino-2,6-dinitrotoluene  (ISO)
4-ethylphenol  (ISO)
4-hydroxynon-2-enal  (ISO)
4-nitrophenol  (EXP)
4-nonylphenol  (EXP,ISO)
4-octylphenol  (ISO)
4-tert-butylphenol  (ISO)
4-tert-Butylphenyl Salicylate  (ISO)
4-tert-Octylphenol  (ISO)
5,6,7,8-tetrahydro-2-naphthol  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (EXP,ISO)
5alpha-androst-16-en-3alpha-ol  (EXP)
5alpha-pregnane-3,20-dione  (ISO)
6-(4-chlorophenyl)imidazo[2,1-b][1,3]thiazole-5-carbaldehyde O-(3,4-dichlorobenzyl)oxime  (EXP,ISO)
6-propyl-2-thiouracil  (EXP,ISO)
8-(4-chlorophenylthio)-cAMP  (EXP)
8-Br-cAMP  (ISO)
9-cis-retinal  (ISO)
9-cis-retinoic acid  (EXP,ISO)
acenaphthene  (ISO)
acetamide  (ISO)
acetic acid [2-[[(5-nitro-2-thiazolyl)amino]-oxomethyl]phenyl] ester  (ISO)
acifluorfen  (EXP)
aclonifen  (ISO)
aflatoxin B1  (ISO)
AICA ribonucleotide  (ISO)
alachlor  (ISO)
aldehydo-D-glucose  (ISO)
aldrin  (ISO)
all-trans-retinoic acid  (ISO)
all-trans-retinol  (EXP)
allethrin  (ISO)
allyl isothiocyanate  (EXP,ISO)
alpha-naphthoflavone  (ISO)
amiodarone  (ISO)
ammonium chloride  (ISO)
androst-4-ene-3,17-dione  (EXP)
androstane  (EXP,ISO)
androstane-3,17-diol  (EXP)
anthracene  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (EXP)
artemether  (ISO)
artemotil  (ISO)
aspartame  (EXP)
atazanavir sulfate  (ISO)
atorvastatin calcium  (EXP,ISO)
atrazine  (EXP)
azobenzene  (ISO)
baicalein  (ISO)
benfuracarb  (EXP,ISO)
benzbromarone  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzophenone  (ISO)
Benzyl parahydroxybenzoate  (ISO)
berberine  (ISO)
bergomottin  (ISO)
beta-naphthoflavone  (EXP)
bexarotene  (ISO)
bezafibrate  (ISO)
bilirubin IXalpha  (ISO)
bioresmethrin  (ISO)
biphenyl  (ISO)
biphenyl-2-ol  (ISO)
biphenyl-4-ol  (ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
Bisphenol A diglycidyl ether  (ISO)
bisphenol A dimethacrylate  (ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (EXP,ISO)
Bisphenol Z  (ISO)
bortezomib  (ISO)
Bromophos-ethyl  (ISO)
bromothymol blue  (ISO)
bromuconazole  (ISO)
bupirimate  (ISO)
buprofezin  (ISO)
bupropion  (ISO)
Butamifos  (ISO)
butylated hydroxyanisole  (EXP)
Butylbenzyl phthalate  (ISO)
Butylparaben  (ISO)
cadmium atom  (EXP)
calcipotriol  (ISO)
captan  (EXP)
carbamazepine  (EXP,ISO)
carbaryl  (ISO)
carbon nanotube  (EXP)
carbosulfan  (ISO)
cefuroxime  (EXP)
cerivastatin  (EXP,ISO)
CGP 52608  (ISO)
chenodeoxycholic acid  (EXP,ISO)
Chlomethoxyfen  (ISO)
chlormidazole  (ISO)
chlornitrofen  (ISO)
chlorpromazine  (EXP,ISO)
chlorpyrifos  (EXP,ISO)
chlorpyrifos-methyl  (ISO)
cholesterol  (EXP,ISO)
chromium(6+)  (EXP)
chrysin  (EXP,ISO)
ciguatoxin CTX1B  (EXP)
cimetidine  (ISO)
ciprofibrate  (EXP,ISO)
cisplatin  (ISO)
clemizole  (ISO)
clofibrate  (EXP,ISO)
clopidogrel  (ISO)
clotrimazole  (EXP,ISO)
cobalt atom  (EXP)
cobalt dichloride  (EXP)
cobicistat  (EXP)
cocaine  (ISO)
copper(II) sulfate  (ISO)
corticosterone  (EXP)
crotamiton  (ISO)
cyclobutanes  (ISO)
cyclophosphamide  (ISO)
cyclosporin A  (EXP,ISO)
cypermethrin  (EXP,ISO)
cyproconazole  (EXP,ISO)
cyproterone acetate  (EXP)
D-glucose  (ISO)
DDD  (ISO)
DDE  (EXP,ISO)
DDT  (EXP,ISO)
decabromodiphenyl ether  (EXP,ISO)
deoxycholic acid  (EXP,ISO)
dexamethasone  (EXP,ISO)
Di-n-hexyl phthalate  (ISO)
Diallyl sulfide  (EXP,ISO)
diazinon  (ISO)
dibenzofurans  (EXP)
dibutyl phthalate  (ISO)
Dichlofenthion  (ISO)
diclofenac  (ISO)
dicofol  (ISO)
Dicyclohexyl phthalate  (ISO)
dieldrin  (EXP,ISO)
dienestrol  (ISO)
diethyl phthalate  (ISO)
diethylstilbestrol  (ISO)
difenoconazole  (ISO)
diiodine  (EXP)
diisobutyl phthalate  (ISO)
diisononyl phthalate  (ISO)
Dimethametryn  (ISO)
Dimethyl phthalate  (ISO)
dimethyl sulfoxide  (EXP)
dioxygen  (ISO)
dipentyl phthalate  (ISO)
Diphenamid  (ISO)
diphenhydramine  (ISO)
diphenyl ether  (ISO)
dipropyl phthalate  (ISO)
diquat  (EXP)
doxorubicin  (EXP,ISO)
doxylamine  (ISO)
drometrizole  (ISO)
edifenphos  (ISO)
efavirenz  (ISO)
ellagic acid  (EXP,ISO)
endosulfan  (EXP,ISO)
endrin  (ISO)
enilconazole  (EXP)
enzacamene  (ISO)
EPN  (ISO)
epoxiconazole  (EXP)
erlotinib hydrochloride  (ISO)
estrone  (EXP,ISO)
ethanol  (EXP,ISO)
ethion  (ISO)
etofenprox  (ISO)
etoposide  (ISO)
everolimus  (EXP)
fenofibrate  (EXP,ISO)
fenoxycarb  (ISO)
fenvalerate  (ISO)
fipronil  (EXP,ISO)
flavanone  (ISO)
flavone  (ISO)
flavonoids  (ISO)
fluazifop-butyl  (ISO)
fluconazole  (EXP)
fludioxonil  (ISO)
fluoranthene  (ISO)
fluorene  (ISO)
fluvastatin  (EXP,ISO)
folpet  (EXP)
fumonisin B1  (EXP)
furan  (ISO)
furathiocarb  (ISO)
galangin  (EXP,ISO)
gamma-hexachlorocyclohexane  (ISO)
gemfibrozil  (EXP)
glafenine  (ISO)
glucose  (ISO)
glutathione  (EXP)
glycochenodeoxycholic acid  (ISO)
glycocholic acid  (ISO)
glycodeoxycholic acid  (ISO)
glycogen  (ISO)
glyphosate  (ISO)
guggulsterone  (EXP)
GW 4064  (ISO)
GW 7647  (ISO)
heptachlor  (ISO)
Heptachlor epoxide  (ISO)
herbicide  (ISO)
hexachlorobenzene  (ISO)
hexestrol  (ISO)
imidacloprid  (EXP)
imidazoles  (EXP,ISO)
imperatorin  (ISO)
indole-3-methanol  (ISO)
iprobenfos  (ISO)
irinotecan  (EXP)
Isobutylparaben  (ISO)
isofenphos  (ISO)
isoniazide  (EXP)
isopimpinellin  (EXP)
isoxazoles  (ISO)
kaempferol  (ISO)
ketoconazole  (EXP,ISO)
kojic acid  (ISO)
L-ethionine  (ISO)
lactacystin  (ISO)
Lasiocarpine  (ISO)
leflunomide  (ISO)
leptophos  (ISO)
Licochalcone B  (ISO)
lipopolysaccharide  (EXP)
lithocholic acid  (EXP)
loperamide  (ISO)
lycopene  (EXP)
malathion  (EXP,ISO)
MC-4379  (ISO)
Meclizine  (EXP,ISO)
metformin  (ISO)
methapyrilene  (ISO)
methotrexate  (ISO)
methoxychlor  (EXP,ISO)
Methyl 2-benzoylbenzoate  (ISO)
metoprolol  (EXP)
metyrapone  (EXP,ISO)
miconazole  (ISO)
midazolam  (EXP)
mifepristone  (ISO)
Mitotane  (ISO)
molinate  (ISO)
mono(2-ethylhexyl) phthalate  (EXP,ISO)
monobenzyl phthalate  (EXP,ISO)
monocrotophos  (ISO)
monoethyl phthalate  (EXP,ISO)
Monomethyl phenylphosphonate  (ISO)
monosodium L-glutamate  (EXP)
Muraglitazar  (ISO)
N,N-dimethyl-3-phenyl-3-(2-pyridinyl)-1-propanamine  (ISO)
N-(1-naphthyl)ethylenediamine  (EXP)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (EXP,ISO)
N-nitrosodiethylamine  (EXP,ISO)
N-Nitrosopyrrolidine  (ISO)
naphthalene-1,5-diamine  (EXP)
NCX-4040  (ISO)
nefazodone  (ISO)
neticonazole  (ISO)
nevirapine  (ISO)
niclosamide  (ISO)
nitrapyrin  (EXP)
nitrofen  (ISO)
nonan-1-ol  (ISO)
Nonylphenol  (EXP)
O-methyleugenol  (ISO)
Octachlorostyrene  (EXP,ISO)
octamethylcyclotetrasiloxane  (ISO)
okadaic acid  (ISO)
oleanolic acid  (EXP)
oleic acid  (ISO)
oltipraz  (EXP)
omeprazole  (EXP,ISO)
orlistat  (ISO)
ortho-Aminoazotoluene  (EXP)
Oxadiazon  (EXP,ISO)
oxazepam  (EXP)
oxolane  (EXP)
oxybenzone  (ISO)
oxycodone  (ISO)
p-menthan-3-ol  (EXP)
p-tert-Amylphenol  (ISO)
Padimate O  (ISO)
Panaxytriol  (ISO)
paracetamol  (EXP,ISO)
paraoxon  (EXP)
paraquat  (ISO)
parathion  (EXP,ISO)
PCB138  (ISO)
pencycuron  (ISO)
pendimethalin  (ISO)
pentachloronitrobenzene  (EXP)
pentobarbital  (EXP)
perfluorobutanesulfonic acid  (ISO)
perfluorobutyric acid  (ISO)
perfluorodecanoic acid  (EXP)
perfluorododecanoic acid  (ISO)
perfluoroheptanoic acid  (ISO)
perfluorohexanesulfonic acid  (EXP)
perfluorohexanoic acid  (ISO)
perfluorononanoic acid  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanesulfonamide  (ISO)
perfluorooctanoic acid  (EXP,ISO)
permethrin  (EXP,ISO)
phenacetin  (EXP)
phenanthrene  (EXP,ISO)
phenobarbital  (EXP,ISO)
phenolphthalein  (ISO)
phenols  (ISO)
phenothrin  (ISO)
Phenoxybenzamine  (ISO)
phenthoate  (EXP,ISO)
phenylhydrazine  (EXP)
phenytoin  (EXP,ISO)
phosalone  (ISO)
piperonyl butoxide  (EXP)
Piperophos  (ISO)
pirinixic acid  (EXP,ISO)
PK-11195  (ISO)
pregnenolone  (EXP)
pregnenolone 16alpha-carbonitrile  (EXP)
prochloraz  (ISO)
profenofos  (ISO)
progesterone  (EXP,ISO)
propiconazole  (EXP,ISO)
propylparaben  (ISO)
propyzamide  (EXP)
prothiofos  (ISO)
protoporphyrin  (EXP)
pterostilbene  (ISO)
pyrene  (EXP,ISO)
pyriproxyfen  (ISO)
quercetin  (EXP,ISO)
rac-lactic acid  (ISO)
reactive oxygen species  (ISO)
reserpine  (EXP,ISO)
resmethrin  (ISO)
resveratrol  (EXP,ISO)
retinyl acetate  (EXP)
rifampicin  (EXP,ISO)
romidepsin  (ISO)
rotenone  (ISO)
senecionine  (EXP)
silicon dioxide  (EXP)
simvastatin  (EXP,ISO)
sodium arsenite  (EXP,ISO)
sodium cholate  (EXP)
sodium dichromate  (EXP)
stilbene oxide  (EXP)
stilbenoid  (ISO)
Sudan III  (ISO)
sulconazole  (ISO)
sulfluramid  (ISO)
sulfoxaflor  (EXP)
tamoxifen  (EXP)
Tanshinone I  (ISO)
tartrazine  (ISO)
taurocholic acid  (EXP)
tebuconazole  (EXP,ISO)
tectorigenin  (EXP)
teriflunomide  (ISO)
Tesaglitazar  (ISO)
testosterone  (EXP,ISO)
Tetrachlorobisphenol A  (ISO)
tetrachloromethane  (EXP,ISO)
tetracycline  (EXP)
Tetrahydrogestrinone  (EXP)
thiacloprid  (EXP)
thioacetamide  (ISO)
Thiobencarb  (ISO)
thiophanate-methyl  (EXP)
Thymophthalein  (ISO)
thyroxine  (EXP)
tiracizine  (ISO)
tolclofos-methyl  (ISO)
toluene  (ISO)
toxaphene  (EXP)
TRAM-34  (ISO)
triadimefon  (EXP)
triazoles  (EXP,ISO)
tribufos  (EXP)
Tributyltin oxide  (EXP)
triclocarban  (EXP,ISO)
triclosan  (EXP,ISO)
trifloxystrobin  (ISO)
trifluralin  (ISO)
trifluridine  (ISO)
triphenyl phosphate  (EXP,ISO)
triphenylmethane  (ISO)
tris(2,3-dibromopropyl) phosphate  (EXP)
troglitazone  (ISO)
tunicamycin  (EXP)
uranium atom  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vatalanib  (ISO)
vinclozolin  (ISO)
voriconazole  (EXP)
zearalenone  (ISO)
ziram  (EXP)
Zoxazolamine  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IDA,IEA)
cytoskeleton  (IEA)
cytosol  (IDA)
nucleoplasm  (IEA,ISO)
nucleus  (IBA,IDA,IEA)

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Interactions between hepatic Mrp4 and Sult2a as revealed by the constitutive androstane receptor and Mrp4 knockout mice. Assem M, etal., J Biol Chem 2004 May 21;279(21):22250-7. Epub 2004 Mar 5.
2. Physical and transcriptional map of a 3-Mb region of mouse chromosome 1 containing the gene for the neural tube defect mutant loop-tail (Lp). Eddleston J, etal., Genomics 1999 Mar 1;56(2):149-59.
3. Pregnane X receptor and constitutive androstane receptor modulate differently CYP3A-mediated metabolism in early- and late-stage cholestasis. Gabbia D, etal., World J Gastroenterol. 2017 Nov 14;23(42):7519-7530. doi: 10.3748/wjg.v23.i42.7519.
4. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
5. Effects of insulin on CYP3A activity and nicardipine disposition in streptozotocin-induced diabetic rats. Hasegawa Y, etal., J Pharm Pharmacol. 2010 Jul;62(7):883-9. doi: 10.1211/jpp.62.05.0009.
6. MGDs mouse GO annotations MGD data from the GO Consortium
7. MGD IEA MGD IEA
8. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
9. Mouse MP Annotation Import Pipeline RGD automated import pipeline
10. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8603043   PMID:8650544   PMID:8889548   PMID:9295294   PMID:10349636   PMID:10462436   PMID:11005856   PMID:11039937   PMID:11042159   PMID:11057673   PMID:11076861   PMID:11217851  
PMID:11752199   PMID:11891224   PMID:12000748   PMID:12049174   PMID:12054576   PMID:12181440   PMID:12376703   PMID:12464260   PMID:12477932   PMID:12482595   PMID:12554751   PMID:12644704  
PMID:12805272   PMID:12881517   PMID:12885400   PMID:12923173   PMID:12948398   PMID:14561088   PMID:14742670   PMID:14963109   PMID:14988430   PMID:15004031   PMID:15151997   PMID:15272053  
PMID:15340055   PMID:15358766   PMID:15492232   PMID:15564320   PMID:15591315   PMID:15610065   PMID:15610734   PMID:15619241   PMID:15684063   PMID:15764585   PMID:15831521   PMID:15905360  
PMID:15953603   PMID:16141072   PMID:16141073   PMID:16219912   PMID:16310787   PMID:16449384   PMID:16492670   PMID:16498401   PMID:16606610   PMID:16614213   PMID:16623664   PMID:16825189  
PMID:16950832   PMID:16971476   PMID:16973756   PMID:17118917   PMID:17314319   PMID:17341620   PMID:17355985   PMID:17521389   PMID:17567731   PMID:17596880   PMID:17605299   PMID:17904126  
PMID:17950690   PMID:17962186   PMID:18187584   PMID:18287559   PMID:18362160   PMID:18441373   PMID:18648086   PMID:18677425   PMID:18703564   PMID:18778245   PMID:18794335   PMID:18798339  
PMID:18941143   PMID:19041682   PMID:19433268   PMID:19489075   PMID:19542321   PMID:19617349   PMID:19686701   PMID:19850644   PMID:19850873   PMID:19858220   PMID:20059953   PMID:20185760  
PMID:20197307   PMID:20211142   PMID:20403969   PMID:20404936   PMID:20932939   PMID:21145854   PMID:21173431   PMID:21220114   PMID:21267068   PMID:21296199   PMID:21335546   PMID:21424122  
PMID:21519326   PMID:21628639   PMID:21672546   PMID:21677750   PMID:21698271   PMID:21705713   PMID:21778422   PMID:21826054   PMID:21827731   PMID:21872825   PMID:21873423   PMID:21873635  
PMID:21983082   PMID:22371261   PMID:22488010   PMID:22496397   PMID:22503787   PMID:22653878   PMID:22698814   PMID:22761658   PMID:22815988   PMID:22988430   PMID:23091169   PMID:23152187  
PMID:23291559   PMID:23626729   PMID:23652202   PMID:23652203   PMID:23721867   PMID:24114688   PMID:24498295   PMID:24690595   PMID:24789201   PMID:24824808   PMID:24863967   PMID:24952961  
PMID:25052003   PMID:25155144   PMID:25209997   PMID:25404284   PMID:25542016   PMID:25656644   PMID:25661872   PMID:26115596   PMID:26171734   PMID:26187448   PMID:26265742   PMID:26363009  
PMID:26407237   PMID:26612838   PMID:26928356   PMID:26984780   PMID:27007446   PMID:27080131   PMID:27113289   PMID:27180240   PMID:27240521   PMID:27325701   PMID:27426490   PMID:27434302  
PMID:27530923   PMID:27531557   PMID:27853109   PMID:27889186   PMID:28181583   PMID:28265001   PMID:28283178   PMID:28350814   PMID:28393244   PMID:28422158   PMID:28580885   PMID:28751364  
PMID:28756207   PMID:28903501   PMID:28947831   PMID:29142166   PMID:29351922   PMID:29716964   PMID:29718219   PMID:29890134   PMID:29996089   PMID:30102401   PMID:30336042   PMID:30573465  
PMID:30593543   PMID:30910785   PMID:31095752   PMID:31875848   PMID:31882815   PMID:32193417   PMID:32339513   PMID:33154041   PMID:33828301   PMID:34264181   PMID:34971590   PMID:35285501  
PMID:36720308   PMID:37759441   PMID:38128062  


Genomics

Comparative Map Data
Nr1i3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391171,041,503 - 171,046,414 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1171,041,539 - 171,048,270 (+)EnsemblGRCm39 Ensembl
GRCm381171,213,934 - 171,218,845 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1171,213,970 - 171,220,701 (+)EnsemblGRCm38mm10GRCm38
MGSCv371173,144,101 - 173,148,975 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361173,050,645 - 173,055,519 (+)NCBIMGSCv36mm8
Celera1173,662,106 - 173,666,983 (+)NCBICelera
Cytogenetic Map1H3NCBI
cM Map179.21NCBI
NR1I3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381161,229,669 - 161,238,203 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1161,229,666 - 161,238,244 (-)EnsemblGRCh38hg38GRCh38
GRCh371161,199,459 - 161,207,993 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361159,466,080 - 159,474,624 (-)NCBINCBI36Build 36hg18NCBI36
Build 341158,012,527 - 158,021,028NCBI
Celera1134,266,598 - 134,275,155 (-)NCBICelera
Cytogenetic Map1q23.3NCBI
HuRef1132,556,384 - 132,564,950 (-)NCBIHuRef
CHM1_11162,595,690 - 162,604,231 (-)NCBICHM1_1
T2T-CHM13v2.01160,367,115 - 160,375,669 (-)NCBIT2T-CHM13v2.0
Nr1i3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81386,165,327 - 86,170,362 (+)NCBIGRCr8
GRCr8 Ensembl1386,165,349 - 86,170,370 (+)EnsemblGRCr8 Ensembl
mRatBN7.21383,632,940 - 83,638,193 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1383,632,899 - 83,637,906 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1386,138,802 - 86,143,744 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01387,537,042 - 87,541,984 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01384,768,669 - 84,773,611 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01389,585,072 - 89,591,278 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1389,586,283 - 89,591,277 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01394,211,961 - 94,218,143 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41387,104,241 - 87,108,563 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1383,264,145 - 83,269,088 (+)NCBICelera
RGSC_v3.11387,292,773 - 87,297,730 (+)NCBI
Cytogenetic Map13q24NCBI
Nr1i3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495546812,985,105 - 13,002,850 (-)NCBIChiLan1.0ChiLan1.0
NR1I3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2188,608,014 - 88,622,336 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1188,298,310 - 88,312,643 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01136,642,126 - 136,651,074 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11140,553,938 - 140,562,799 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1140,553,951 - 140,562,799 (-)Ensemblpanpan1.1panPan2
NR1I3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13821,252,874 - 21,257,951 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3821,253,089 - 21,258,827 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3821,327,778 - 21,332,809 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03821,370,731 - 21,375,765 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3821,370,927 - 21,376,640 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13821,267,845 - 21,272,874 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03821,673,095 - 21,678,115 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03822,082,201 - 22,087,226 (+)NCBIUU_Cfam_GSD_1.0
Nr1i3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244050587,319,081 - 7,325,712 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936903527,871 - 533,790 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936903527,838 - 533,930 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NR1I3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl489,226,690 - 89,236,431 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1489,226,314 - 89,231,781 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2497,082,997 - 97,088,463 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NR1I3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1202,724,843 - 2,752,999 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl202,744,908 - 2,756,658 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660381,793,181 - 1,801,362 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nr1i3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624794141,316 - 158,059 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nr1i3
226 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:2333
Count of miRNA genes:680
Interacting mature miRNAs:899
Transcripts:ENSMUST00000005820, ENSMUST00000075469, ENSMUST00000111328, ENSMUST00000133075, ENSMUST00000137298, ENSMUST00000149404, ENSMUST00000152865, ENSMUST00000155126
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301523Ccrs1_mcorpus callosum hemisphere surface size 1 (mouse)Not determined1139602037173602216Mouse
1558802Skmw6_mskeletal muscle weight 6 (mouse)Not determined1167954584195154279Mouse
1302037Nktcn1_mnatural killer T cell numbers 1 (mouse)Not determined1168186243171632257Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
12790987Tgl5_mtriglyceride 5 (mouse)1160097157194097157Mouse
4141878Qrr1_mQTL rich region on chromosome 1 (mouse)Not determined170878743175320066Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
1357854Sle16_msystematic lupus erythematosus susceptibility 16 (mouse)Not determined1169038741177377587Mouse
12790984Pcho7_mplasma cholesterol 7 (mouse)1147219390181219390Mouse
1301016Szs1_mseizure susceptibility 1 (mouse)Not determined1170878743174456436Mouse
12790988Phdlc5_mplasma HDL cholesterol 5 (mouse)9160097157194097157Mouse
1301251Scc3_mcolon tumor susceptibility 3 (mouse)Not determined1168213823195154279Mouse
1300740Tne1_mtotal number errors (mouse)Not determined1139602037173602216Mouse
12790996Aath2_maortic arch atherosclerosis 2 (mouse)1145077630179077630Mouse
12791001Aath6_maortic arch atherosclerosis 6 (mouse)1147219390181219390Mouse
1300745Gvhd1_mgraft-versus-host disease 1 (mouse)Not determined1157456299191456436Mouse
10412162Nobq3_mNew Zealand obese QTL 3 (mouse)Not determined1103933405191225397Mouse
4141346Skmw12_mskeletal muscle weight 12 (mouse)Not determined150756737184756922Mouse
1357618Splq5_mspleen weight QTL 5 (mouse)Not determined1150193673188359312Mouse
1301301Sle1_msystemic lupus erythmatosus susceptibility 1 (mouse)Not determined1152038741186038913Mouse
12904936Edlmmq1_mextensor digitorum longus muscle mass QTL 1 (mouse)1155002940189002940Mouse
1301565Mnotch_mmodifier of Notch (mouse)Not determined1157456299191456436Mouse
1301309Emo1_memotionality 1 (mouse)Not determined1162977097185994196Mouse
1301025Lbw7_mlupus NZB x NZW 7 (mouse)Not determined1152038741186038913Mouse
10412205Bbaa30_mB.burgdorferi-associated arthritis 30 (mouse)Not determined1169038741174456436Mouse
12904944Tammq1_mtibialis anterior muscle mass QTL 1 (mouse)1155002940189002940Mouse
1357602Vtbt2_mvertebral trabecular bone trait 2 (mouse)Not determined1139602037173602216Mouse
12904957Gmmq1_mgastrocnemius muscle mass QTL 1 (mouse)1155002940189002940Mouse
1300777Chol10_mcholesterol 10 (mouse)Not determined9147875502181875616Mouse
1302098Eila1_methanol induced locomotor activity 1 (mouse)Not determined1112008822175468938Mouse
1300823Ath9_matherosclerosis 9 (mouse)Not determined1160112768194112883Mouse
1301333Mop3_mmorphine preference 3 (mouse)Not determined1167756737189303617Mouse
1300571Opfa_mopen field activity (mouse)Not determined1144531347178531592Mouse
1301339Hdlq15_mHDL QTL 15 (mouse)Not determined1165873675195154279Mouse
1301596Elnt_mescape latencies during navigation task (mouse)Not determined1162145207194111528Mouse
4141165Bglu3_mblood glucose level 3 (mouse)Not determined155831765189831892Mouse
12792983Liq1_mlimb inflammation QTL 1 (mouse)1167586086191225397Mouse
1357889Lprq3_mlipoprotein QTL 3 (mouse)Not determined1152038741186038913Mouse
4141160Cq1_mcholesterol QTL 1 (mouse)Not determined1139452188173452308Mouse
4142182Shali5_msurvival time to hyperoxic acute lung injury 5 (mouse)Not determined155582237185994196Mouse
10402498Lmr20_mleishmaniasis resistance 20 (mouse)Not determined1158468817192468938Mouse
1301619Cafq1_mcaffeine metabolism QTL 1 (mouse)Not determined1155716221189716369Mouse
4141149Hbnr4_mHeligmosomoides bakeri nematode resistance 4 (mouse)Not determined147125258188983224Mouse
10043899Hdlq99_mHDL QTL 99 (mouse)Not determined1147875502181875616Mouse
11537365Cnes4_mC. neoformans susceptibility locus 4 (mouse)1144449142178449142Mouse
11081167Tir8_mtrypanosome infection response 8 (mouse)1155716221189716369Mouse
1302132Pbw1_mpentobarbital withdrawal QTL 1 (mouse)Not determined1155831765189831892Mouse
4142159Nba2_mNew Zealand Black autoimmunity 2 (mouse)Not determined151835111185835280Mouse
1301602Bslm4_mbasal locomotor activity 4 (mouse)Not determined1157456299191456436Mouse
1301866Cplaq3_mcircadian period of locomotor activity 3 (mouse)Not determined1155721528189722608Mouse
1300842Sle9_msystematic lupus erythematosus susceptibility 9 (mouse)Not determined1158468817192468938Mouse
4142149Ctex_mCtla4 expression QTL (mouse)Not determined1153557406175468938Mouse
1301614Cgnz1_mchronic glomerulonephritis in NZM 1 (mouse)Not determined1152038741186038913Mouse
12910521Scgq1_mspontaneous crescentic glomerulonephritis QTL 1 (mouse)1156602037176262693Mouse
12910522Scgq2_mspontaneous crescentic glomerulonephritis QTL 2 (mouse)1147125258171632257Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
4142014Wbcq5_mwhite blood cell quantitative locus 5 (mouse)Not determined1141095010175095156Mouse
4141245Cq2_mcholesterol QTL 2 (mouse)Not determined1157456299191456436Mouse
4141244Bmd5c_mbone mineral density 5c (mouse)Not determined155526796189526897Mouse
13464138Hdlq107_mHDL QTL 107 (mouse)1152132744186132744Mouse
38456000Lick2_mlick rate 2, sucralose (mouse)1170397438173397435Mouse
1300888Berr1_mberghei resistance locus 1 (mouse)Not determined1164143227190534272Mouse
38456001Lick1_mlick rate 1, water (mouse)1170397438173397435Mouse
1301151Hdlq14_mHDL QTL 14 (mouse)Not determined1142489543176489734Mouse
4141233Femwf12_mfemur work to failure 12 (mouse)Not determined141233173175233272Mouse
1301122Cd8mts1_mCD8 T memory cell subset 1 (mouse)Not determined1155831765189831892Mouse
1301632Bw8q1_mbody weight at 8 weeks QTL 1 (mouse)Not determined1161201261195154279Mouse
4141483Femwf7_mfemur work to failure 7 (mouse)Not determined167462514195154279Mouse
1301894Skull2_mskull morphology 2 (mouse)Not determined1139602037173602216Mouse
1301385Radpf2_mradiation pulmonary fibrosis 2 (mouse)Not determined1147125258182873798Mouse
1301134Bmd1_mbone mineral density 1 (mouse)Not determined1156602037189303617Mouse
1302158Fembrs5_mfemur breaking strength 5 (mouse)Not determined1167462514195154279Mouse
1301132Mors1_mmodifier of obesity related sterility 1 (mouse)Not determined1170379500195154279Mouse
1357493Lgaq3_mlate growth adjusted QTL 3 (mouse)Not determined1150193673188359312Mouse
11251722Ewc1_methanol withdrawal and consumption 1 (mouse)1152132744186132744Mouse
1302193Cpfd1_mcerebellum pattern fissures (mouse)Not determined1139602037173602216Mouse
10043963Obq25_mobesity QTL 25 (mouse)Not determined1154410512188410512Mouse
13452393Ity3b_mimmunity to S. typhimurium 3b (mouse)1156497439172097436Mouse
1301431Pcho1_mplasma cholesterol 1 (mouse)Not determined1159262573193262693Mouse
1302201Alcw1_malcohol withdrawal 1 (mouse)Not determined1170868354171966357Mouse
10412074Nhdlt1_mnon-HDL cholesterol and triglyceride levels 1 (mouse)Not determined1153675990187676105Mouse
1357485Lgq4_mlate growth QTL 4 (mouse)Not determined1150193673188359312Mouse
1301932Ssta2_msusceptibility to Salmonella typhimurium antigens 2 (mouse)Not determined1155716221189716369Mouse
27095901Scvln8_msacral vertebrae length 2, 10 week (mouse)194127725172027567Mouse
11049576Lmr8a_mleishmaniasis resistance 8a (mouse)1139602037173602216Mouse
1301202Yaa4_mY-linked autoimmune acceleration 4 (mouse)Not determined1158468817192468938Mouse
10054490Opefa_mopen field activity (mouse)Not determined1153712853187712853Mouse
1300948Fglu2_mfasting glucose 2 (mouse)Not determined1157456299191456436Mouse
1301467Pcir1_mperiosteal circumference 1 (mouse)Not determined1141233173175233272Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
1300696Bpq2_mblood pressure QTL 2 (mouse)Not determined1139602037173602216Mouse
11059556Lmr20b_mleishmaniasis resistance 20b (mouse)1158468817192468938Mouse
4141554Cfmq1_mcystic fibrosis modifier QTL 1 (mouse)Not determined1152038741186038913Mouse
11059557Lmr20a_mleishmaniasis resistance 20a (mouse)1158468817192468938Mouse
11059558Lmr20c_mleishmaniasis resistance 20c (mouse)1158468817192468938Mouse
4142065Bmd5b_mbone mineral density 5b (mouse)Not determined168835111171765633Mouse
1301191Stia1_mserum transfer induced arthritis 1 (mouse)Not determined1141233173175233272Mouse
1300934Cfbw1_mcystic fibrosis body weight 1 (mouse)Not determined1145145207179145325Mouse
1301189Lmr8_mleishmaniasis resistance 8 (mouse)Not determined1156602037189303617Mouse
1558720Bpq8_mblood pressure QTL 8 (mouse)Not determined1143284665177284803Mouse
13207571Tcq11_mtotal cholesterol QTL 11 (mouse)1169137569179647565Mouse
10766456Sle21_msystematic lupus erythematosus susceptibility 21 (mouse)1155831765189831892Mouse
1301710Bmd5_mbone mineral density 5 (mouse)Not determined1139602037173602216Mouse
27095935Ulnl5_mulna length 5, 10 week (mouse)1128727737181327565Mouse
10054271Nba9_mNew Zealand Black autoimmunity 9 (mouse)Not determined1155525623189527533Mouse
10054270Nba10_mNew Zealand Black autoimmunity 10 (mouse)Not determined1152794822186438620Mouse
1559024Zit1_mzinc induced tolerance 1 (mouse)Not determined1167462514195154279Mouse
13207587Mwmlpt1_mMorris water maze latency to platform, training, 1 (mouse)1169597438173397435Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
13207591Mwmlpa1_mMorris water maze latency to platform, all, 1 (mouse)1169797438173297435Mouse
1300732Melm2_mmelanoma modifier 2 (mouse)Not determined1157456299191456436Mouse
1301216Cbm1_mcerebellum weight 1 (mouse)Not determined1157456299191456436Mouse
27095915Scvln13_msacral vertebrae length 2, 16 week (mouse)1117527730179827565Mouse
11533913Rd6m1_mretinal degeneration 6 modifier 1 (mouse)1141233173175233272Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)175976637181327565Mouse
1300969Sluc5_msusceptibility to lung cancer 5 (mouse)Not determined1151186243185186402Mouse

Markers in Region
AI551208  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381171,219,237 - 171,219,381UniSTSGRCm38
MGSCv371173,149,368 - 173,149,512UniSTSGRCm37
Celera1173,667,376 - 173,667,520UniSTS
Cytogenetic Map1H3UniSTS
cM Map192.6UniSTS
Whitehead/MRC_RH12123.31UniSTS
Nr1i3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1H3UniSTS
cM Map192.6UniSTS
cM Map192.6UniSTS
AA209988  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381171,218,676 - 171,218,758UniSTSGRCm38
MGSCv371173,148,807 - 173,148,889UniSTSGRCm37
Celera1173,666,815 - 173,666,897UniSTS
Cytogenetic Map1H3UniSTS
cM Map193.3UniSTS
Nr1i3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1H3UniSTS
cM Map192.6UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001243062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001243063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_009803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006496628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011238743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_373594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_373595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC163497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF009326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF009327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF009328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI132241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK133515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC037645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC089541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000005820   ⟹   ENSMUSP00000005820
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1171,041,539 - 171,046,414 (+)Ensembl
GRCm38.p6 Ensembl1171,213,970 - 171,218,845 (+)Ensembl
Ensembl Acc Id: ENSMUST00000075469   ⟹   ENSMUSP00000074915
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1171,041,540 - 171,046,412 (+)Ensembl
GRCm38.p6 Ensembl1171,213,971 - 171,218,843 (+)Ensembl
Ensembl Acc Id: ENSMUST00000111328   ⟹   ENSMUSP00000106960
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1171,041,590 - 171,046,413 (+)Ensembl
GRCm38.p6 Ensembl1171,214,021 - 171,218,844 (+)Ensembl
Ensembl Acc Id: ENSMUST00000133075   ⟹   ENSMUSP00000137852
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1171,041,571 - 171,046,414 (+)Ensembl
GRCm38.p6 Ensembl1171,214,002 - 171,218,845 (+)Ensembl
Ensembl Acc Id: ENSMUST00000137298
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1171,041,563 - 171,046,570 (+)Ensembl
GRCm38.p6 Ensembl1171,213,994 - 171,219,001 (+)Ensembl
Ensembl Acc Id: ENSMUST00000149404
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1171,041,918 - 171,046,287 (+)Ensembl
GRCm38.p6 Ensembl1171,214,349 - 171,218,718 (+)Ensembl
Ensembl Acc Id: ENSMUST00000152865
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1171,041,590 - 171,046,762 (+)Ensembl
GRCm38.p6 Ensembl1171,214,021 - 171,219,193 (+)Ensembl
Ensembl Acc Id: ENSMUST00000155126   ⟹   ENSMUSP00000137683
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1171,041,555 - 171,048,270 (+)Ensembl
GRCm38.p6 Ensembl1171,213,986 - 171,220,701 (+)Ensembl
RefSeq Acc Id: NM_001243062   ⟹   NP_001229991
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391171,041,539 - 171,046,414 (+)NCBI
GRCm381171,213,970 - 171,218,845 (+)NCBI
Celera1173,662,106 - 173,666,984 (+)ENTREZGENE
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001243063   ⟹   NP_001229992
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391171,041,539 - 171,046,414 (+)NCBI
GRCm381171,213,970 - 171,218,845 (+)NCBI
Celera1173,662,106 - 173,666,984 (+)ENTREZGENE
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_009803   ⟹   NP_033933
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391171,041,539 - 171,046,414 (+)NCBI
GRCm381171,213,970 - 171,218,845 (+)NCBI
MGSCv371173,144,101 - 173,148,975 (+)RGD
Celera1173,662,106 - 173,666,984 (+)ENTREZGENE
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006496628   ⟹   XP_006496691
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391171,041,503 - 171,046,414 (+)NCBI
GRCm381171,213,934 - 171,218,845 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011238743   ⟹   XP_011237045
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391171,041,504 - 171,046,414 (+)NCBI
GRCm381171,213,935 - 171,218,845 (+)NCBI
Sequence:
RefSeq Acc Id: XR_373594
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391171,041,503 - 171,046,414 (+)NCBI
GRCm381171,213,934 - 171,218,845 (+)NCBI
Sequence:
RefSeq Acc Id: XR_373595
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391171,041,504 - 171,046,414 (+)NCBI
GRCm381171,213,935 - 171,218,845 (+)NCBI
Sequence:
RefSeq Acc Id: NP_033933   ⟸   NM_009803
- Peptide Label: isoform 1
- UniProtKB: O35628 (UniProtKB/Swiss-Prot),   Q3V008 (UniProtKB/Swiss-Prot),   O35627 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001229991   ⟸   NM_001243062
- Peptide Label: isoform 2
- UniProtKB: O35627 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001229992   ⟸   NM_001243063
- Peptide Label: isoform 3
- UniProtKB: Q5FW96 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006496691   ⟸   XM_006496628
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011237045   ⟸   XM_011238743
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSMUSP00000106960   ⟸   ENSMUST00000111328
Ensembl Acc Id: ENSMUSP00000137852   ⟸   ENSMUST00000133075
Ensembl Acc Id: ENSMUSP00000074915   ⟸   ENSMUST00000075469
Ensembl Acc Id: ENSMUSP00000005820   ⟸   ENSMUST00000005820
Ensembl Acc Id: ENSMUSP00000137683   ⟸   ENSMUST00000155126
Protein Domains
NR LBD   Nuclear receptor

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O35627-F1-model_v2 AlphaFold O35627 1-358 view protein structure

Promoters
RGD ID:6875656
Promoter ID:EPDNEW_M1279
Type:initiation region
Name:Nr1i3_1
Description:Mus musculus nuclear receptor subfamily 1, group I, member 3, transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381171,214,021 - 171,214,081EPDNEW
RGD ID:6818182
Promoter ID:MM_KWN:2829
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_4Hour,   Liver
Transcripts:ENSMUST00000075469,   ENSMUST00000111328,   OTTMUST00000053615,   OTTMUST00000053712,   OTTMUST00000053713,   OTTMUST00000053714,   OTTMUST00000053717,   OTTMUST00000053718,   UC007DNH.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361173,143,996 - 173,144,496 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1346307 AgrOrtholog
Ensembl Genes ENSMUSG00000005677 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000005820 ENTREZGENE
  ENSMUST00000005820.11 UniProtKB/Swiss-Prot
  ENSMUST00000075469 ENTREZGENE
  ENSMUST00000075469.12 UniProtKB/Swiss-Prot
  ENSMUST00000111328 ENTREZGENE
Gene3D-CATH 1.10.565.10 UniProtKB/Swiss-Prot
  3.30.50.10 UniProtKB/Swiss-Prot
InterPro NHR-like_dom_sf UniProtKB/Swiss-Prot
  Nucl_hrmn_rcpt_lig-bd UniProtKB/Swiss-Prot
  Nuclear_hormone_rcpt_NR1 UniProtKB/Swiss-Prot
  Nuclear_hrmn_rcpt UniProtKB/Swiss-Prot
  ThyrH_rcpt UniProtKB/Swiss-Prot
  Znf_hrmn_rcpt UniProtKB/Swiss-Prot
  Znf_NHR/GATA UniProtKB/Swiss-Prot
KEGG Report mmu:12355 UniProtKB/Swiss-Prot
MGD MGI:1346307 ENTREZGENE
NCBI Gene 12355 ENTREZGENE
PANTHER NUCLEAR HORMONE RECEPTOR UniProtKB/Swiss-Prot
  NUCLEAR RECEPTOR SUBFAMILY 1 GROUP I MEMBER 3 UniProtKB/Swiss-Prot
Pfam Hormone_recep UniProtKB/Swiss-Prot
  zf-C4 UniProtKB/Swiss-Prot
PharmGKB NR1I3 RGD
PhenoGen Nr1i3 PhenoGen
PRINTS STRDHORMONER UniProtKB/Swiss-Prot
  STROIDFINGER UniProtKB/Swiss-Prot
  THYROIDHORMR UniProtKB/Swiss-Prot
PROSITE NR_LBD UniProtKB/Swiss-Prot
  NUCLEAR_REC_DBD_1 UniProtKB/Swiss-Prot
  NUCLEAR_REC_DBD_2 UniProtKB/Swiss-Prot
SMART HOLI UniProtKB/Swiss-Prot
  ZnF_C4 UniProtKB/Swiss-Prot
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/Swiss-Prot
  SSF48508 UniProtKB/Swiss-Prot
UniProt M0QWI8_MOUSE UniProtKB/TrEMBL
  NR1I3_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  O35628 ENTREZGENE
  Q3UEP1_MOUSE UniProtKB/TrEMBL
  Q3V008 ENTREZGENE
  Q5FW96 ENTREZGENE, UniProtKB/TrEMBL
  Q8CI30_MOUSE UniProtKB/TrEMBL
UniProt Secondary O35628 UniProtKB/Swiss-Prot
  Q3V008 UniProtKB/Swiss-Prot