Pax3 (paired box 3) - Rat Genome Database

Name: Pax3
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Pax3 (paired box 3) Mus musculus

Analyze

Symbol:

Pax3

Name:

paired box 3

RGD ID:

1552573

MGI Page

MGI

Description:

Enables several functions, including DNA-binding transcription factor activity, RNA polymerase II-specific; chromatin binding activity; and transcription coregulator binding activity. Acts upstream of or within several processes, including nervous system development; regulation of somitogenesis; and regulation of transcription by RNA polymerase II. Located in nucleus. Is expressed in several structures, including branchial arch; central nervous system; embryo mesenchyme; nose; and urinary system. Used to study Waardenburg syndrome type 1; Waardenburg's syndrome; alveolar rhabdomyosarcoma; and neural tube defect. Human ortholog(s) of this gene implicated in Waardenburg syndrome type 1; Waardenburg syndrome type 3; Waardenburg's syndrome; alveolar rhabdomyosarcoma; and craniofacial-deafness-hand syndrome. Orthologous to human PAX3 (paired box 3).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

paired box gene 3; paired box protein Pax-3; Pax; Pax-3; PAX3/FKHR fusion; Sp; Spl; Splchl2; splotch

RGD Orthologs

Human

Rat

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PAX3 (paired box 3)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Pax3 (paired box 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Pax3 (paired box 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PAX3 (paired box 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PAX3 (paired box 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pax3 (paired box 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PAX3 (paired box 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PAX3 (paired box 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pax3 (paired box 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	PAX7 (paired box 7)	HGNC	OrthoDB, OrthoMCL
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Pax3 (paired box 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	PAX3 (paired box 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	pax3a (paired box 3a)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid\|ZFIN)
Danio rerio (zebrafish):	pax3b (paired box 3b)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB\|ZFIN)
Caenorhabditis elegans (roundworm):	pax-3	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	gsb	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	gsb-n	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	prd	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	pax3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	78,077,904 - 78,173,773 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	78,077,904 - 78,173,771 (-)	Ensembl		GRCm39 Ensembl
GRCm38	1	78,101,267 - 78,197,136 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	78,101,267 - 78,197,134 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	78,097,842 - 78,193,711 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	77,985,839 - 78,080,283 (-)	NCBI		MGSCv36	mm8
Celera	1	78,585,057 - 78,620,745 (-)	NCBI		Celera
Cytogenetic Map	1	C4	NCBI
cM Map	1	39.79	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

alveolar rhabdomyosarcoma (ISO)

brain stem glioma (IEP)

congenital diaphragmatic hernia (ISO)

Congenital Hand Deformities (ISO)

Craniofacial Abnormalities (ISO)

craniofacial-deafness-hand syndrome (ISO)

Deafness (ISO)

Diaphragmatic Hernia (ISO)

genetic disease (ISO)

Hearing Loss (ISO)

intellectual disability (ISO)

Nervous System Malformations (ISO)

neural tube defect (IAGP,ISO)

Neurodevelopmental Disorders (ISO)

ocular albinism with sensorineural deafness (ISO)

sarcoma (ISO)

sinonasal undifferentiated carcinoma (ISO)

spina bifida (ISO)

Waardenburg syndrome type 1 (IAGP,ISO)

Waardenburg syndrome type 3 (ISO)

Waardenburg's syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(R,R,R)-alpha-tocopherol (EXP)

(S)-nicotine (ISO)

1,2-dichloroethane (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-sulfonyldiphenol (EXP)

5-bromo-2'-deoxyuridine (EXP)

5-fluorouracil (ISO)

abacavir (ISO)

aflatoxin B1 (ISO)

aldehydo-D-glucose (EXP,ISO)

all-trans-retinoic acid (EXP,ISO)

all-trans-retinol (ISO)

amiodarone (ISO)

ammonium chloride (ISO)

ANTIMYCIN (EXP)

arsenite(3-) (ISO)

belinostat (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP)

bromobenzene (ISO)

cadmium atom (EXP)

cadmium sulfate (EXP)

caffeine (ISO)

CGP 52608 (ISO)

CHIR 99021 (ISO)

choline (EXP)

copper(II) sulfate (ISO)

cycloheximide (ISO)

D-glucose (EXP,ISO)

dabigatran (ISO)

dexamethasone (ISO)

dorsomorphin (ISO)

endosulfan (ISO)

entinostat (ISO)

ethylene glycol (ISO)

fluoxetine (EXP)

folic acid (EXP,ISO)

furan (ISO)

gentamycin (ISO)

glucose (EXP,ISO)

Glutathione ethyl ester (EXP)

glycolic acid (ISO)

L-methionine (EXP)

lipopolysaccharide (ISO)

lithium chloride (ISO)

methylmercury chloride (EXP,ISO)

methylparaben (EXP)

mono(2-ethylhexyl) phthalate (ISO)

N,N-diethyl-m-toluamide (ISO)

N-ethyl-N-nitrosourea (EXP)

nicotine (ISO)

nilotinib (ISO)

nitrofen (ISO)

panobinostat (ISO)

permethrin (ISO)

phenylmercury acetate (ISO)

phenytoin (EXP,ISO)

propanal (ISO)

Ptaquiloside (EXP)

resveratrol (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

sodium arsenite (EXP,ISO)

stilbenoid (EXP)

streptomycin (ISO)

sunitinib (ISO)

thalidomide (ISO)

trichostatin A (ISO)

valproic acid (EXP,ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

anatomical structure development (IBA)

cardiac muscle cell differentiation (NAS)

cell migration (IMP)

cell population proliferation (IMP)

developmental pigmentation (IMP)

heart development (IMP)

mammary gland specification (IMP)

muscle organ development (IMP)

myoblast migration (IMP)

myoblast proliferation (IMP)

negative regulation of transcription by RNA polymerase II (IGI)

nervous system development (IEA)

neural crest cell migration (IMP)

neural tube closure (IMP)

neural tube development (IGI)

neuron fate commitment (IGI)

positive regulation of DNA-templated transcription (ISO)

positive regulation of stem cell proliferation (IMP)

positive regulation of transcription by RNA polymerase II (IDA,ISO)

regulation of DNA-templated transcription (IEA)

regulation of somitogenesis (IGI,IMP)

regulation of transcription by RNA polymerase II (IBA)

skeletal muscle cell differentiation (NAS)

skeletal muscle organ development (IMP)

spinal cord association neuron differentiation (IGI)

stem cell proliferation (IMP)

Cellular Component

nucleoplasm (ISO)

nucleus (IDA)

transcription regulator complex (TAS)

Molecular Function

chromatin binding (IDA)

DNA binding (IEA)

DNA-binding transcription factor activity (TAS)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA,IDA,IGI)

HMG box domain binding (ISO)

protein binding (IPI)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA)

sequence-specific DNA binding (IDA,ISO)

sequence-specific double-stranded DNA binding (ISO)

transcription coregulator binding (IPI)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal axial skeleton morphology (IAGP)

abnormal basisphenoid bone morphology (IAGP)

abnormal bone mineralization (IAGP)

abnormal bone ossification (IAGP)

abnormal bony labyrinth (IAGP)

abnormal brain ventricle morphology (IEA)

abnormal cardiac outflow tract development (IAGP)

abnormal cerebral cortex morphology (IAGP)

abnormal coat/hair pigmentation (IAGP)

abnormal common carotid artery morphology (IAGP)

abnormal cranial ganglia morphology (IAGP)

abnormal craniofacial bone morphology (IAGP)

abnormal craniofacial development (IAGP)

abnormal craniofacial morphology (IAGP)

abnormal dermomyotome development (IAGP)

abnormal diaphragm development (IAGP)

abnormal diaphragm morphology (IAGP)

abnormal dorsal interneuron 4 morphology (IAGP)

abnormal dorsal root ganglion morphology (IAGP)

abnormal embryo morphology (IAGP)

abnormal endolymphatic duct morphology (IAGP)

abnormal enteric ganglia morphology (IAGP)

abnormal epaxial muscle morphology (IAGP)

abnormal eyelid development (IAGP)

abnormal face development (IAGP)

abnormal forebrain morphology (IAGP)

abnormal forelimb morphology (IAGP)

abnormal frontal bone morphology (IAGP)

abnormal glutaminergic neuron morphology (IAGP)

abnormal hind foot hair pigmentation (IAGP)

abnormal hindbrain morphology (IAGP)

abnormal hindlimb morphology (IAGP)

abnormal hypoglossal cord morphology (IAGP)

abnormal hypoglossal nerve morphology (IAGP)

abnormal intercostal muscle morphology (IAGP)

abnormal interventricular septum morphology (IAGP)

abnormal lateral ventricle morphology (IAGP)

abnormal limb morphology (IAGP)

abnormal liver vasculature morphology (IAGP)

abnormal major salivary gland morphology (IAGP)

abnormal mammary line morphology (IAGP)

abnormal mammary placode morphology (IAGP)

abnormal mechanical nociception (IAGP)

abnormal midbrain development (IAGP)

abnormal muscle development (IAGP)

abnormal muscle precursor cell migration (IAGP)

abnormal muscle precursor cell morphology (IAGP)

abnormal myocardial fiber physiology (IAGP)

abnormal myogenesis (IAGP)

abnormal myotome development (IAGP)

abnormal myotome morphology (IAGP)

abnormal nasal bone morphology (IAGP)

abnormal neural crest cell migration (IAGP)

abnormal neural fold elevation formation (IAGP)

abnormal neural tube morphology (IAGP)

abnormal neurocranium morphology (IAGP)

abnormal neuron differentiation (IAGP)

abnormal nose morphology (IAGP)

abnormal oculomotor nerve morphology (IAGP)

abnormal osteoblast differentiation (IAGP)

abnormal otic vesicle development (IAGP)

abnormal palatal mesenchymal cell differentiation (IAGP)

abnormal palatal mesenchymal cell proliferation (IAGP)

abnormal palatal shelf bone ossification (IAGP)

abnormal pharyngeal arch artery morphology (IAGP)

abnormal premaxilla morphology (IAGP)

abnormal pterygoid process morphology (IAGP)

abnormal pulmonary alveolus morphology (IAGP)

abnormal rib development (IAGP)

abnormal rib morphology (IAGP)

abnormal rostral-caudal body axis extension (IAGP)

abnormal secondary palate development (IAGP)

abnormal semicircular canal morphology (IAGP)

abnormal sixth pharyngeal arch artery morphology (IAGP)

abnormal skeletal muscle morphology (IAGP)

abnormal snout morphology (IAGP)

abnormal somatic sensory system morphology (IAGP)

abnormal somite border morphology (IAGP)

abnormal somite development (IAGP)

abnormal spinal cord morphology (IAGP)

abnormal spine curvature (IAGP)

abnormal sternum morphology (IAGP)

abnormal sternum ossification (IAGP)

abnormal tail hair pigmentation (IAGP)

abnormal tail morphology (IEA)

abnormal thymus lobule morphology (IAGP)

abnormal thymus morphology (IAGP)

abnormal thyroid gland morphology (IAGP)

abnormal tongue morphology (IAGP)

abnormal tongue muscle morphology (IAGP)

abnormal tongue position (IAGP)

abnormal tooth morphology (IAGP)

abnormal trochlear nerve morphology (IAGP)

abnormal utricle morphology (IAGP)

abnormal vascular smooth muscle morphology (IAGP)

abnormal vena cava morphology (IAGP)

abnormal ventral coat pigmentation (IAGP)

abnormal vestibular saccule morphology (IAGP)

absent alisphenoid bone (IAGP)

absent choroid plexus (IAGP)

absent coat pigmentation (IEA)

absent dorsal root ganglion (IAGP)

absent eyelids (IAGP)

absent frontal bone (IAGP)

absent gastric milk in neonates (IAGP)

absent hypaxial muscle (IAGP)

absent interparietal bone (IAGP)

absent olfactory bulb (IAGP)

absent palatine bone horizontal plate (IAGP)

absent parietal bone (IAGP)

absent premaxilla (IAGP)

absent pterygoid process (IAGP)

absent skeletal muscle (IAGP)

absent skin pigmentation (IEA)

absent thyroid gland (IAGP)

absent ultimobranchial body (IAGP)

adrenal medulla hyperplasia (IAGP)

alisphenoid bone hypoplasia (IAGP)

anophthalmia (IAGP)

aorta stenosis (IAGP)

atelectasis (IAGP)

belly spot (IAGP)

bifid tongue (IAGP)

bilateral cleft palate (IAGP)

caudal body truncation (IAGP)

caudal rachischisis (IAGP)

cleft palate (IAGP)

cleft secondary palate (IAGP)

cleft upper lip (IAGP)

common truncal valve (IAGP)

complete cleft palate (IAGP)

congestive heart failure (IAGP)

cranioschisis (IAGP)

curly tail (IAGP)

cyanosis (IAGP)

decreased birth body size (IAGP)

decreased body size (IAGP)

decreased body weight (IAGP)

decreased bone ossification (IAGP)

decreased cell proliferation (IAGP)

decreased cochlear coiling (IAGP)

decreased embryo size (IAGP)

decreased neuron number (IAGP)

decreased neuronal precursor cell number (IAGP)

decreased palatal length (IAGP)

decreased pruritus (IAGP)

decreased satellite cell number (IAGP)

decreased skeletal muscle fiber diameter (IAGP)

decreased skeletal muscle mass (IAGP)

decreased tail pigmentation (IAGP)

decreased tympanic ring size (IAGP)

decreased ventricle muscle contractility (IAGP)

delayed neural tube closure (IAGP)

dilated heart left ventricle (IAGP)

dilated heart right ventricle (IAGP)

dilated pulmonary trunk (IAGP)

diluted coat color (IEA)

disorganized dorsal root ganglion (IAGP)

double outlet right ventricle (IAGP)

ectopic bone (IAGP)

ectopic skeletal muscle (IAGP)

ectopic thymus (IAGP)

edema (IAGP)

embryonic lethality (IAGP)

embryonic lethality between implantation and somite formation, complete penetrance (IAGP)

embryonic lethality during organogenesis, complete penetrance (IAGP)

embryonic lethality during organogenesis, incomplete penetrance (IAGP)

embryonic lethality, complete penetrance (IAGP)

embryonic lethality, incomplete penetrance (IEA)

exencephaly (IAGP)

failure of eyelid fusion (IAGP)

failure of palatal shelf elevation (IAGP)

failure to gastrulate (IAGP)

forebrain hypoplasia (IAGP)

frontal bone hypoplasia (IAGP)

fusion of vertebral bodies (IAGP)

head spot (IAGP)

hypaxial muscle hypoplasia (IAGP)

hypopigmentation (IAGP)

incomplete rostral neuropore closure (IAGP)

increased chemical nociceptive threshold (IAGP)

increased embryonic neuroepithelium apoptosis (IAGP)

increased heart weight (IAGP)

increased hematocrit (IAGP)

increased liver weight (IAGP)

increased mitotic index (IEA)

increased rhabdomyosarcoma incidence (IAGP)

increased skeletal muscle fiber density (IAGP)

increased spleen weight (IAGP)

increased thermal nociceptive threshold (IAGP)

kinked tail (IEA)

lacrimal bone hypoplasia (IAGP)

lethality throughout fetal growth and development, complete penetrance (IAGP)

lethality throughout fetal growth and development, incomplete penetrance (IAGP)

loss of GABAergic neurons (IAGP)

loss of glutamate neurons (IAGP)

maxilla hypoplasia (IAGP)

meteorism (IAGP)

midbrain hyperplasia (IAGP)

midline facial cleft (IAGP)

muscle hypoplasia (IAGP)

muscular ventricular septal defect (IAGP)

neonatal lethality, complete penetrance (IAGP)

neonatal lethality, incomplete penetrance (IAGP)

no abnormal phenotype detected (IAGP)

no spontaneous movement (IAGP)

ocular hypertelorism (IAGP)

omphalocele (IAGP)

open neural tube (IAGP)

optic placode degeneration (IAGP)

palatal shelf hypoplasia (IAGP)

palatal shelves fail to meet at midline (IAGP)

pallor (IAGP)

patent tricuspid valve (IAGP)

perinatal lethality, complete penetrance (IAGP)

perinatal lethality, incomplete penetrance (IAGP)

persistent right dorsal aorta (IAGP)

persistent truncus arteriosis (IAGP)

polycythemia (IAGP)

postnatal growth retardation (IAGP)

postnatal lethality (IAGP)

postnatal lethality, complete penetrance (IAGP)

postnatal lethality, incomplete penetrance (IAGP)

premature death (IAGP)

prenatal lethality, complete penetrance (IAGP)

prenatal lethality, incomplete penetrance (IEA)

primary atelectasis (IAGP)

pulmonary artery stenosis (IAGP)

respiratory distress (IAGP)

respiratory failure (IAGP)

retroesophageal right subclavian artery (IAGP)

rib bifurcation (IAGP)

rib fusion (IAGP)

short endolymphatic duct (IAGP)

short mandible (IAGP)

short Meckel's cartilage (IAGP)

short snout (IAGP)

short soft palate (IAGP)

small dorsal root ganglion (IAGP)

small embryonic telencephalon (IEA)

small mandible (IAGP)

small snout (IAGP)

small thoracic cavity (IAGP)

small thyroid gland (IAGP)

spina bifida (IAGP)

spina bifida cystica (IEA)

subcutaneous edema (IAGP)

supravalvar pulmonary trunk stenosis (IAGP)

thick interventricular septum (IAGP)

thin dermal layer (IAGP)

thin diaphragm muscle (IAGP)

thin ventricular wall (IAGP)

tongue ankylosis (IAGP)

transverse fur striping (IAGP)

turbinate hypoplasia (IAGP)

variable body spotting (IEA)

variable depigmentation (IAGP)

ventricular septal defect (IAGP)

vertebral fusion (IAGP)

white spotting (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	Pax3 mRNA is decreased in the hearts of rats with experimental diaphragmatic hernia.	Gonzalez-Reyes S, etal., Pediatr Surg Int. 2005 Mar;21(3):203-7. Epub 2004 Dec 23.
2.	MGDs mouse GO annotations	MGD data from the GO Consortium
3.	MGD IEA	MGD IEA
4.	Pax3 expression enhances PDGF-B-induced brainstem gliomagenesis and characterizes a subset of brainstem glioma.	Misuraca KL, etal., Acta Neuropathol Commun. 2014 Oct 21;2:134. doi: 10.1186/s40478-014-0134-6.
5.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
6.	Mouse MP Annotation Import Pipeline	RGD automated import pipeline
7.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
9.	The mutational spectrum in Waardenburg syndrome.	Tassabehji M, etal., Hum Mol Genet. 1995 Nov;4(11):2131-7.
10.	Gene expression signatures identify rhabdomyosarcoma subtypes and detect a novel t(2;2)(q35;p23) translocation fusing PAX3 to NCOA1.	Wachtel M, etal., Cancer Res. 2004 Aug 15;64(16):5539-45.
11.	Homozygous and heterozygous inheritance of PAX3 mutations causes different types of Waardenburg syndrome.	Wollnik B, etal., Am J Med Genet A. 2003 Sep 15;122(1):42-5.

Additional References at PubMed

PMID:473084	PMID:1290160	PMID:1303254	PMID:1347148	PMID:1358796	PMID:1395725	PMID:1416080	PMID:1485966	PMID:1552554	PMID:1630580	PMID:1631953	PMID:1682057
PMID:1685142	PMID:1754402	PMID:1771598	PMID:1821845	PMID:1962752	PMID:1974085	PMID:2022185	PMID:2045114	PMID:2218944	PMID:2246770	PMID:2339698	PMID:2619088
PMID:2763211	PMID:2793182	PMID:3242494	PMID:3424222	PMID:3898457	PMID:4826095	PMID:5424503	PMID:5912439	PMID:6385329	PMID:6627032	PMID:6665745	PMID:7546735
PMID:7556916	PMID:7556922	PMID:7600957	PMID:7600971	PMID:7601910	PMID:7651534	PMID:7720554	PMID:7720556	PMID:7720577	PMID:7731966	PMID:7744814	PMID:7801299
PMID:7809114	PMID:7825605	PMID:7858167	PMID:7863329	PMID:7883790	PMID:7907014	PMID:7907867	PMID:7909605	PMID:7911756	PMID:7915533	PMID:7925010	PMID:7976186
PMID:7981674	PMID:7981748	PMID:8005021	PMID:8050356	PMID:8069909	PMID:8099544	PMID:8100762	PMID:8126546	PMID:8155581	PMID:8162858	PMID:8163557	PMID:8187635
PMID:8188220	PMID:8221886	PMID:8228963	PMID:8238963	PMID:8275849	PMID:8287471	PMID:8288218	PMID:8299937	PMID:8406007	PMID:8406486	PMID:8406487	PMID:8421686
PMID:8447316	PMID:8453768	PMID:8490648	PMID:8512089	PMID:8529839	PMID:8563175	PMID:8565076	PMID:8565825	PMID:8565855	PMID:8575294	PMID:8622765	PMID:8631247
PMID:8631261	PMID:8633043	PMID:8661050	PMID:8664898	PMID:8681797	PMID:8688464	PMID:8735950	PMID:8744440	PMID:8751373	PMID:8754282	PMID:8756299	PMID:8786127
PMID:8787761	PMID:8837770	PMID:8854889	PMID:8918877	PMID:8943322	PMID:8951074	PMID:8954736	PMID:8955271	PMID:9006062	PMID:9016952	PMID:9043076	PMID:9053326
PMID:9070329	PMID:9083694	PMID:9094721	PMID:9094722	PMID:9098922	PMID:9118797	PMID:9126293	PMID:9126297	PMID:9169087	PMID:9169845	PMID:9187079	PMID:9200655
PMID:9230312	PMID:9232602	PMID:9256352	PMID:9262482	PMID:9297966	PMID:9334279	PMID:9344762	PMID:9352100	PMID:9353119	PMID:9374397	PMID:9389448	PMID:9428409
PMID:9463628	PMID:9464541	PMID:9479498	PMID:9486530	PMID:9490412	PMID:9500544	PMID:9516748	PMID:9541113	PMID:9545534	PMID:9585504	PMID:9601985	PMID:9603426
PMID:9622616	PMID:9636069	PMID:9641914	PMID:9662403	PMID:9671585	PMID:9675053	PMID:9690473	PMID:9731536	PMID:9736723	PMID:9739106	PMID:9767163	PMID:9792553
PMID:9799236	PMID:9806772	PMID:9808779	PMID:9811581	PMID:9831647	PMID:9848852	PMID:9858722	PMID:9986734	PMID:9988216	PMID:10079220	PMID:10079225	PMID:10079229
PMID:10079236	PMID:10090727	PMID:10191046	PMID:10197584	PMID:10208749	PMID:10226008	PMID:10230789	PMID:10231856	PMID:10328847	PMID:10331980	PMID:10349636	PMID:10364424
PMID:10395791	PMID:10403250	PMID:10411402	PMID:10419687	PMID:10457014	PMID:10473117	PMID:10477293	PMID:10508520	PMID:10512192	PMID:10516314	PMID:10521655	PMID:10529415
PMID:10529425	PMID:10545229	PMID:10556048	PMID:10603357	PMID:10603359	PMID:10617567	PMID:10653966	PMID:10686619	PMID:10699180	PMID:10704279	PMID:10751175	PMID:10769239
PMID:10946068	PMID:11029008	PMID:11042159	PMID:11066097	PMID:11071760	PMID:11071781	PMID:11076861	PMID:11171399	PMID:11171995	PMID:11217851	PMID:11231058	PMID:11256068
PMID:11334426	PMID:11423130	PMID:11493522	PMID:11498051	PMID:11585810	PMID:11684651	PMID:11688557	PMID:11700028	PMID:11747084	PMID:11782431	PMID:11784021	PMID:11807043
PMID:11823447	PMID:11857794	PMID:11861759	PMID:11861760	PMID:11863357	PMID:11884616	PMID:11900971	PMID:11914272	PMID:11997098	PMID:12004056	PMID:12015293	PMID:12016514
PMID:12062038	PMID:12086465	PMID:12135932	PMID:12142027	PMID:12152071	PMID:12242297	PMID:12356307	PMID:12358782	PMID:12372284	PMID:12401804	PMID:12413905	PMID:12421714
PMID:12441304	PMID:12464179	PMID:12466851	PMID:12477932	PMID:12522123	PMID:12569128	PMID:12594042	PMID:12620989	PMID:12668617	PMID:12668636	PMID:12739027	PMID:12810603
PMID:12854658	PMID:12874124	PMID:12925591	PMID:12948444	PMID:14170406	PMID:14499653	PMID:14516674	PMID:14517256	PMID:14602680	PMID:14628042	PMID:14665670	PMID:14678836
PMID:14681479	PMID:14699577	PMID:14736747	PMID:14779004	PMID:15030763	PMID:15105374	PMID:15132998	PMID:15148315	PMID:15155583	PMID:15162501	PMID:15226254	PMID:15259034
PMID:15322542	PMID:15361870	PMID:15366018	PMID:15376315	PMID:15384171	PMID:15465489	PMID:15486471	PMID:15489287	PMID:15520281	PMID:15545629	PMID:15568017	PMID:15572686
PMID:15604102	PMID:15618518	PMID:15629702	PMID:15691760	PMID:15728667	PMID:15729346	PMID:15782199	PMID:15788460	PMID:15789408	PMID:15804569	PMID:15843801	PMID:15882581
PMID:15893304	PMID:15899870	PMID:15930101	PMID:15964993	PMID:16029418	PMID:16141072	PMID:16141073	PMID:16142327	PMID:16166380	PMID:16166582	PMID:16179863	PMID:16226775
PMID:16285903	PMID:16300735	PMID:16316407	PMID:16323077	PMID:16357211	PMID:16380438	PMID:16387292	PMID:16397144	PMID:16397891	PMID:16408284	PMID:16423343	PMID:16467359
PMID:16510500	PMID:16537918	PMID:16571633	PMID:16582099	PMID:16602821	PMID:16624854	PMID:16712836	PMID:16720875	PMID:16728472	PMID:16787918	PMID:16824806	PMID:16906226
PMID:16919269	PMID:16938278	PMID:16945326	PMID:16951257	PMID:16952014	PMID:17039375	PMID:17086203	PMID:17098221	PMID:17111379	PMID:17131407	PMID:17138667	PMID:17166778
PMID:17194759	PMID:17207666	PMID:17229764	PMID:17273555	PMID:17275805	PMID:17323927	PMID:17360543	PMID:17360769	PMID:17396232	PMID:17408621	PMID:17418413	PMID:17473173
PMID:17477400	PMID:17490632	PMID:17492753	PMID:17504940	PMID:17540357	PMID:17553906	PMID:17592144	PMID:17623803	PMID:17654714	PMID:17662948	PMID:17698292	PMID:17704541
PMID:17727834	PMID:17728348	PMID:17868131	PMID:17927973	PMID:17932502	PMID:17959802	PMID:17967198	PMID:17974128	PMID:18053811	PMID:18086577	PMID:18198335	PMID:18204461
PMID:18243171	PMID:18257070	PMID:18287559	PMID:18308300	PMID:18325909	PMID:18330927	PMID:18331887	PMID:18334251	PMID:18367555	PMID:18395835	PMID:18397758	PMID:18435457
PMID:18469343	PMID:18483260	PMID:18483623	PMID:18513381	PMID:18522874	PMID:18538758	PMID:18538759	PMID:18539113	PMID:18539270	PMID:18554416	PMID:18593883	PMID:18634775
PMID:18644785	PMID:18666806	PMID:18672055	PMID:18708529	PMID:18753144	PMID:18832392	PMID:18845762	PMID:18849531	PMID:18854138	PMID:18942111	PMID:19000668	PMID:19023080
PMID:19095803	PMID:19097048	PMID:19100251	PMID:19103755	PMID:19123128	PMID:19123137	PMID:19135046	PMID:19149881	PMID:19168680	PMID:19207986	PMID:19221588	PMID:19258013
PMID:19279136	PMID:19281780	PMID:19332644	PMID:19339268	PMID:19346403	PMID:19384958	PMID:19386638	PMID:19442434	PMID:19448158	PMID:19458195	PMID:19460349	PMID:19460366
PMID:19520072	PMID:19531353	PMID:19554048	PMID:19633665	PMID:19666532	PMID:19698141	PMID:19705442	PMID:19723505	PMID:19729440	PMID:19733541	PMID:19741146	PMID:19783738
PMID:19820125	PMID:19850029	PMID:19855129	PMID:19877269	PMID:19906978	PMID:19962975	PMID:20006729	PMID:20035737	PMID:20045680	PMID:20059953	PMID:20059955	PMID:20059958
PMID:20079728	PMID:20095975	PMID:20145239	PMID:20152185	PMID:20211142	PMID:20356956	PMID:20368965	PMID:20412779	PMID:20532162	PMID:20534536	PMID:20573702	PMID:20630950
PMID:20652258	PMID:20665884	PMID:20680010	PMID:20699298	PMID:20807571	PMID:20932939	PMID:20956382	PMID:20960561	PMID:20978076	PMID:21143873	PMID:21150899	PMID:21157040
PMID:21169561	PMID:21177349	PMID:21177767	PMID:21211521	PMID:21254332	PMID:21254333	PMID:21267068	PMID:21303853	PMID:21316601	PMID:21331042	PMID:21354128	PMID:21377456
PMID:21420400	PMID:21421465	PMID:21422169	PMID:21440680	PMID:21478499	PMID:21512107	PMID:21539826	PMID:21556048	PMID:21565611	PMID:21600894	PMID:21602886	PMID:21606373
PMID:21664901	PMID:21693562	PMID:21698205	PMID:21708977	PMID:21710609	PMID:21730146	PMID:21731673	PMID:21749861	PMID:21750035	PMID:21782525	PMID:21799763	PMID:21867959
PMID:21873635	PMID:21882254	PMID:21929743	PMID:21930923	PMID:21943152	PMID:21949878	PMID:21956886	PMID:21959220	PMID:21997191	PMID:22110056	PMID:22129828	PMID:22147907
PMID:22159413	PMID:22187527	PMID:22190459	PMID:22216266	PMID:22228095	PMID:22290434	PMID:22315423	PMID:22349825	PMID:22377357	PMID:22394517	PMID:22438570	PMID:22457346
PMID:22485132	PMID:22508726	PMID:22513369	PMID:22522309	PMID:22526732	PMID:22558231	PMID:22629237	PMID:22696295	PMID:22710718	PMID:22723526	PMID:22736793	PMID:22745251
PMID:22768305	PMID:22848431	PMID:22862948	PMID:22884393	PMID:22940113	PMID:22960170	PMID:22972626	PMID:22983563	PMID:22987639	PMID:22987640	PMID:22988430	PMID:23020925
PMID:23024056	PMID:23058914	PMID:23079662	PMID:23081715	PMID:23129807	PMID:23283078	PMID:23288605	PMID:23383217	PMID:23384562	PMID:23410975	PMID:23418536	PMID:23477786
PMID:23506836	PMID:23527126	PMID:23555292	PMID:23622066	PMID:23650549	PMID:23671652	PMID:23673330	PMID:23760954	PMID:23765941	PMID:23773994	PMID:23785297	PMID:23827310
PMID:23872235	PMID:23897781	PMID:23900540	PMID:23907538	PMID:23934123	PMID:23946446	PMID:23968884	PMID:23969310	PMID:23983188	PMID:24036067	PMID:24055173	PMID:24098136
PMID:24098141	PMID:24121508	PMID:24146773	PMID:24170322	PMID:24173031	PMID:24213582	PMID:24284205	PMID:24290375	PMID:24409333	PMID:24443808	PMID:24453992	PMID:24528677
PMID:24565836	PMID:24634098	PMID:24662046	PMID:24677751	PMID:24687876	PMID:24760871	PMID:24769727	PMID:24815547	PMID:24821700	PMID:24844572	PMID:24871946	PMID:24875805
PMID:24927569	PMID:24942009	PMID:24952961	PMID:25005473	PMID:25030697	PMID:25119037	PMID:25217815	PMID:25220152	PMID:25236433	PMID:25258086	PMID:25267720	PMID:25271623
PMID:25446276	PMID:25466249	PMID:25605943	PMID:25659124	PMID:25715398	PMID:25753732	PMID:25774014	PMID:25794678	PMID:25799573	PMID:25800090	PMID:25807280	PMID:25917818
PMID:25942625	PMID:25959774	PMID:25980463	PMID:26062940	PMID:26109658	PMID:26116661	PMID:26153230	PMID:26166575	PMID:26207754	PMID:26212322	PMID:26237517	PMID:26253404
PMID:26297811	PMID:26329581	PMID:26387456	PMID:26393505	PMID:26441343	PMID:26459221	PMID:26481065	PMID:26496195	PMID:26538636	PMID:26545946	PMID:26587692	PMID:26621269
PMID:26688546	PMID:26839363	PMID:26839365	PMID:26949601	PMID:26952979	PMID:26954549	PMID:26988119	PMID:27014961	PMID:27114066	PMID:27144312	PMID:27223328	PMID:27300003
PMID:27302397	PMID:27329940	PMID:27346341	PMID:27349434	PMID:27370713	PMID:27381226	PMID:27415617	PMID:27446912	PMID:27491074	PMID:27651434	PMID:27702788	PMID:27784329
PMID:27906130	PMID:27993983	PMID:28043919	PMID:28087629	PMID:28172500	PMID:28177282	PMID:28228264	PMID:28334989	PMID:28343944	PMID:28381738	PMID:28434801	PMID:28438836
PMID:28625870	PMID:28807903	PMID:28827394	PMID:28838968	PMID:28882193	PMID:28883017	PMID:28891097	PMID:28893950	PMID:28943254	PMID:29031500	PMID:29073101	PMID:29079520
PMID:29084951	PMID:29231808	PMID:29285798	PMID:29394901	PMID:29439133	PMID:29463853	PMID:29467244	PMID:29523871	PMID:29543863	PMID:29555813	PMID:29670077	PMID:29674978
PMID:29679560	PMID:29725084	PMID:29768404	PMID:29771971	PMID:29859889	PMID:29882512	PMID:29975682	PMID:30071041	PMID:30093562	PMID:30106373	PMID:30130585	PMID:30134070
PMID:30169530	PMID:30366904	PMID:30408103	PMID:30561639	PMID:30581079	PMID:30604848	PMID:30683671	PMID:30801883	PMID:30807574	PMID:30846445	PMID:30853441	PMID:30872278
PMID:30917309	PMID:31006621	PMID:31006622	PMID:31070778	PMID:31127120	PMID:31130354	PMID:31241461	PMID:31348492	PMID:31461644	PMID:31491724	PMID:31625560	PMID:31636139
PMID:31655130	PMID:31685991	PMID:31699935	PMID:31747096	PMID:31789450	PMID:32049039	PMID:32094117	PMID:32105214	PMID:32160556	PMID:32616504	PMID:32692983	PMID:32984348
PMID:33053343	PMID:33206716	PMID:33214242	PMID:33298461	PMID:33336498	PMID:33750945	PMID:33839113	PMID:33935652	PMID:34162961	PMID:34321664	PMID:34433040	PMID:34490272
PMID:34490995	PMID:34544261	PMID:34590699	PMID:34906895	PMID:35076017	PMID:35149920	PMID:35181706	PMID:35399523	PMID:35514236	PMID:35618666	PMID:35645295	PMID:35669512
PMID:35713404	PMID:35736367	PMID:35781558	PMID:35806430	PMID:35815610	PMID:35817979	PMID:35839257	PMID:35859073	PMID:35874842	PMID:35894043	PMID:35899771	PMID:35942939
PMID:35970860	PMID:36008423	PMID:36017733	PMID:36196625	PMID:36210210	PMID:36292593	PMID:36384129	PMID:36724256

Genomics

Comparative Map Data

Pax3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	78,077,904 - 78,173,773 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	78,077,904 - 78,173,771 (-)	Ensembl		GRCm39 Ensembl
GRCm38	1	78,101,267 - 78,197,136 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	78,101,267 - 78,197,134 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	78,097,842 - 78,193,711 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	77,985,839 - 78,080,283 (-)	NCBI		MGSCv36	mm8
Celera	1	78,585,057 - 78,620,745 (-)	NCBI		Celera
Cytogenetic Map	1	C4	NCBI
cM Map	1	39.79	NCBI

PAX3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	222,199,887 - 222,298,998 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	2	222,199,887 - 222,298,998 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	223,064,606 - 223,163,717 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	222,772,851 - 222,871,944 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	222,891,555 - 222,989,205	NCBI
Celera	2	216,832,726 - 216,931,738 (-)	NCBI		Celera
Cytogenetic Map	2	q36.1	NCBI
HuRef	2	214,918,697 - 215,017,780 (-)	NCBI		HuRef
CHM1_1	2	223,071,095 - 223,170,215 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	222,684,993 - 222,784,124 (-)	NCBI		T2T-CHM13v2.0

Pax3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	9	79,567,455 - 79,664,042 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	79,568,634 - 79,664,042 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	87,998,443 - 88,093,830 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	9	93,111,318 - 93,206,669 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	9	91,509,872 - 91,605,274 (-)	NCBI	Rnor_WKY
Rnor_6.0	9	84,004,004 - 84,101,226 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	84,005,183 - 84,101,172 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	83,765,158 - 83,871,411 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	77,477,813 - 77,576,632 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	77,692,768 - 77,692,881 (-)	NCBI
Celera	9	77,080,699 - 77,176,237 (-)	NCBI		Celera
Cytogenetic Map	9	q33	NCBI

Pax3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955453	11,463,379 - 11,558,006 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955453	11,463,407 - 11,558,001 (+)	NCBI	ChiLan1.0	ChiLan1.0

PAX3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	2B	124,829,842 - 124,929,287 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	109,441,938 - 109,541,449 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	228,022,453 - 228,121,850 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	228,022,453 - 228,121,874 (-)	Ensembl	panpan1.1		panPan2

PAX3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	37	28,346,476 - 28,443,648 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	37	28,346,563 - 28,444,561 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	37	29,183,832 - 29,282,546 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	37	28,371,451 - 28,469,641 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	37	28,371,535 - 28,469,658 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	37	28,283,899 - 28,382,350 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	37	28,214,748 - 28,313,220 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	37	28,233,000 - 28,331,742 (-)	NCBI		UU_Cfam_GSD_1.0
Dog Cytomap	37	q16-q17	NCBI

Pax3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	177,872,678 - 177,964,983 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936569	4,216,900 - 4,307,815 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936569	4,215,513 - 4,307,815 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PAX3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	124,094,295 - 124,193,011 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	124,093,803 - 124,193,041 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

PAX3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	108,125,198 - 108,225,217 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	108,125,747 - 108,224,478 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	91,149,850 - 91,250,433 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pax3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624823	2,871,162 - 2,961,944 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624823	2,870,762 - 2,963,134 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Pax3
2712 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	2617
Count of miRNA genes:	724
Interacting mature miRNAs:	998
Transcripts:	ENSMUST00000004994, ENSMUST00000087086, ENSMUST00000172555
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
13824984	Twq5_m	testis weight QTL 5 (mouse)					1	3069992	184732197	Mouse
11039528	Ccc3_m	colitis susceptibility in the Collaborative Cross 3 (mouse)					1	3680142	195051546	Mouse
1357753	Kidq2_m	kidney weight QTL 2 (mouse)			Not determined		1	34760138	150193871	Mouse
1357488	Splq3_m	spleen weight QTL 3 (mouse)			Not determined		1	34760138	150193871	Mouse
1558860	W10q7_m	weight 10 weeks QTL 7 (mouse)			Not determined		1	34760138	150193871	Mouse
1357721	Sle17_m	systematic lupus erythematosus susceptibility 17 (mouse)			Not determined		1	39132808	126445310	Mouse
1301722	Cia9_m	collagen induced arthritis QTL 9 (mouse)			Not determined		1	45783900	189303617	Mouse
1301670	Ssta1_m	susceptibility to Salmonella typhimurium antigens 1 (mouse)			Not determined		1	45946755	79946882	Mouse
1301616	Yaa2_m	Y-linked autoimmune acceleration 2 (mouse)			Not determined		1	46854690	80854839	Mouse
1301225	Sle7_m	systematic lupus erythematosus susceptibility 7 (mouse)			Not determined		1	46854690	80854839	Mouse
1558905	Gct7_m	granulosa cell tumorigenesis 7 (mouse)			Not determined		1	47349894	81350013	Mouse
1558822	Vas1_m	autoimmune vasitis resistance 1 (mouse)			Not determined		1	48889006	82889210	Mouse
1301211	Bbaa11_m	B.burgdorferi-associated arthritis 11 (mouse)			Not determined		1	48889006	82889210	Mouse
1301430	Cdcs2_m	cytokine deficiency colitis susceptibility 2 (mouse)			Not determined		1	48892345	82892485	Mouse
10043965	Obq24_m	obesity QTL 24 (mouse)			Not determined		1	50890216	84890216	Mouse
4141305	Tgq9_m	triglyceride QTL 9 (mouse)			Not determined			51421605	85421605	Mouse
4142291	Aec2_m	autoimmune exocrinopathy 2 (mouse)			Not determined			52457737	182250592	Mouse
1357741	Nidd5k_m	Nidd5 on KK-A<y> (mouse)			Not determined		1	55974948	89975057	Mouse
4142467	Wbcq1_m	white blood cell quantitative locus 1 (mouse)			Not determined		1	56266214	90266360	Mouse
1357505	Vtbt1_m	vertebral trabecular bone trait 1 (mouse)			Not determined		1	56266214	90266360	Mouse
1558717	Ses1a_m	salmonella enteritidis susceptibility 1a (mouse)			Not determined		1	56726922	90727077	Mouse
1301933	Insq6_m	insulin QTL 6 (mouse)			Not determined		1	56726922	90727077	Mouse
14746998	Mancz1_m	mandible centroid size 1 (mouse)					1	57941351	91941351	Mouse
14747009	Manh49_m	mandible shape 49 (mouse)					1	57941351	91941351	Mouse
1300746	Skl1_m	skeletal size (tail length) 1 (mouse)			Not determined		1	57991977	91992080	Mouse
1357679	Egrm1_m	early growth rate, maternal effect 1 (mouse)			Not determined		1	57991977	91992080	Mouse
1301162	Skull1_m	skull morphology 1 (mouse)			Not determined		1	57991977	91992080	Mouse
1301667	Lxw5_m	lupus BXSB x NZW 5 (mouse)			Not determined		1	58549191	92549443	Mouse
1301444	Alcw5_m	alcohol withdrawal 5 (mouse)			Not determined		1	58549191	92549443	Mouse
1301748	Abbp1_m	A/J and C57BL/6 blood pressure 1 (mouse)			Not determined		1	62946755	120529678	Mouse
10412185	Hcs9_m	hepatocarcinogenesis susceptibility 9 (mouse)			Not determined		1	63854690	189303617	Mouse
1300841	Ssial1_m	susceptibility to sialadenitis 1 (mouse)			Not determined		1	63920002	153557562	Mouse
1302119	Cia15_m	collagen induced arthritis 15 (mouse)			Not determined		1	65889006	88496101	Mouse
27095918	Ulnl1_m	ulna length 1, 5 week (mouse)					1	67339159	129727737	Mouse
4141625	Emo4_m	emotionality 4 (mouse)			Not determined			68071345	86235027	Mouse
1302146	Cocrb1_m	cocaine related behavior 1 (mouse)			Not determined		1	70133533	104139557	Mouse
4141393	Mol2_m	modifier of LPS-response 2 (mouse)			Not determined			71624679	78183144	Mouse
1300976	Bmd19_m	bone mineral density 19 (mouse)			Not determined		1	73266214	108838414	Mouse
4142394	Mssq1_m	mandible size and shape QTL 1 (mouse)			Not determined			73615692	107615830	Mouse
1301304	Hrq3_m	heart rate quantitative locus 3 (mouse)			Not determined		1	73615692	107615830	Mouse
1300989	Lrdg1_m	light induced retinal degeneration 1 (mouse)			Not determined		1	73755175	147125370	Mouse
14697705	Stsl3b_m	Salmonella typhimurium susceptibility locus 3b (mouse)					1	74139159	81777715	Mouse
4141914	Gcsfis_m	G-CSF induced splenomegaly (mouse)			Not determined			74516235	148715579	Mouse
1357847	Jckm2_m	juvenile cystic kidney modifier 2 (mouse)			Not determined		1	74991977	133290937	Mouse
1300821	Lore1_m	loss of righting induced by ethanol 1 (mouse)			Not determined		1	75549191	92941077	Mouse
27095931	Pglq1_m	pelvic girdle length QTL 1, 5 week (mouse)					1	75976637	128527737	Mouse
27095928	Pglq6_m	pelvic girdle length QTL 6, 10 week (mouse)					1	75976637	148775742	Mouse
26884448	Sklq1_m	skull length QTL 1, 5 week (mouse)					1	75976637	181327565	Mouse
1558928	Mord2_m	modifier of retinal degeneration 2 (mouse)			Not determined		1	77123115	110536075	Mouse
14697706	Stsl3a_m	Salmonella typhimurium susceptibility locus 3a (mouse)					1	77476637	95827725	Mouse
14696691	Malq1_m	mean attack latency QTL 1 (mouse)					1	77976637	87927722	Mouse

Markers in Region

X59358

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	1	78,103,108 - 78,103,258	UniSTS	GRCm38
MGSCv37	1	78,099,683 - 78,099,833	UniSTS	GRCm37
Celera	1	78,586,916 - 78,587,066	UniSTS
Cytogenetic Map	1	C4	UniSTS
cM Map	1	44.0	UniSTS
Whitehead/MRC_RH	1	1140.26	UniSTS
Whitehead_YAC	1		UniSTS

Pax3

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
MGSCv37	1	78,190,344 - 78,191,905	UniSTS	GRCm37
Cytogenetic Map	1	C4	UniSTS
cM Map	1	44.0	UniSTS

Pax3

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	1	C4	UniSTS

Pax3

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	1	C4	UniSTS

Pax3

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	1	78,193,769 - 78,195,330	UniSTS	GRCm38
MGSCv37	1	78,190,344 - 78,191,905	UniSTS	GRCm37
Cytogenetic Map	1	C4	UniSTS
cM Map	1	44.0	UniSTS

Pax3

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	1	C4	UniSTS
cM Map	1	44.0	UniSTS

Pax3

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	1	C4	UniSTS

X59358

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	1	78,103,235 - 78,103,320	UniSTS	GRCm38
MGSCv37	1	78,099,810 - 78,099,895	UniSTS	GRCm37
Celera	1	78,587,043 - 78,587,128	UniSTS
Cytogenetic Map	1	C4	UniSTS
Whitehead/MRC_RH	1	1140.26	UniSTS

Pax3

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	1	C4	UniSTS

Pax3

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	1	C4	UniSTS

Pax3

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	1	C4	UniSTS

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001159520	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_008781	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC115893	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC118213	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK012493	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK014337	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK044985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK045018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK048723	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK083424	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK144973	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK147919	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK148354	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK157760	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK178379	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK182746	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK183425	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK191274	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK198372	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK214220	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY743239	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC048699	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466548	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HM571690	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HM571691	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HM571692	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HM571693	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HM571694	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HM571695	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HM571696	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HM571697	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HM571698	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HM571699	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HM571700	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HM571701	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HM571702	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HM571703	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HM571704	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HM571705	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HM571706	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HM571707	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HM571708	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HM571709	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HM571710	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HM571711	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HM571712	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HM571713	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HM571714	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HM571715	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HM571716	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HM571717	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	S66429	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	S66433	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	X59358	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000004994 ⟹ ENSMUSP00000004994

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	78,077,904 - 78,173,475 (-)	Ensembl
GRCm38.p6 Ensembl	1	78,101,267 - 78,196,838 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000087086 ⟹ ENSMUSP00000084320

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	78,077,907 - 78,173,771 (-)	Ensembl
GRCm38.p6 Ensembl	1	78,101,270 - 78,197,134 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000172555

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	78,160,093 - 78,173,750 (-)	Ensembl
GRCm38.p6 Ensembl	1	78,183,456 - 78,197,113 (-)	Ensembl

RefSeq Acc Id:

NM_001159520 ⟹ NP_001152992

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	1	78,077,904 - 78,173,773 (-)	NCBI
GRCm38	1	78,101,267 - 78,197,136 (-)	NCBI
MGSCv37	1	78,097,842 - 78,193,711 (-)	RGD
Celera	1	78,585,057 - 78,620,745 (-)	RGD
cM Map	1		ENTREZGENE

Sequence:

show sequence

GCTCCCTAGTCCGGATCCCTGCACTCGGTGTCACGACGGGAGGAGACTTGGGACGTGTTCCTGC
CTCGTCACCACCCTCCCTCACCCGATCTTCGCGGTGCAGTGAGCACCTTTGCCAGTAGCCCCAG
CTGAGGGGCCGATCTGCTAGACTCGCACCAAACTCGTCCGCCCTGGGCTTGGGATCCTGCACTC
AAGGGACTCCTCTGGAGCCTGTGGACTTGGATCTATTAGCGCCCCCCTCCCCGCGCCCCGCCTC
CCTCTCTGGCCTTTTTTGGGGGAGGAGCTCTCCGAGATCCGGAGAGTTCCCGAGGGTCACCCGC
CGCACTGTGCTCGCTTTTTCGTCTCGCCTTCACCTGGATATAATTTGCGAGCGAAGCTGCCCCC
AGGATGACCACGCTGGCCGGCGCTGTGCCCAGGATGATGCGGCCCGGCCCGGGGCAGAATTACC
CACGCAGCGGCTTCCCGCTGGAAGTGTCCACCCCTCTTGGCCAGGGCCGAGTCAACCAGCTCGG
AGGAGTATTTATCAACGGCAGGCCTCTGCCCAACCATATCCGCCACAAGATAGTGGAGATGGCC
CACCATGGCATTCGGCCTTGCGTCATTTCTCGCCAGCTTCGCGTGTCCCATGGTTGCGTCTCTA
AGATCCTGTGCAGGTACCAGGAGACAGGCTCCATCCGACCTGGTGCCATCGGCGGCAGCAAACC
CAAGCAGGTGACAACGCCTGACGTGGAGAAGAAAATTGAGGAATACAAAAGAGAGAACCCGGGC
ATGTTTAGCTGGGAAATCAGAGACAAATTGCTCAAGGACGCTGTCTGTGATCGGAACACTGTGC
CCTCAGTGAGTTCTATCAGCCGCATCCTGAGGAGTAAATTTGGAAAAGGAGAAGAGGAGGAGGC
GGATCTAGAAAGGAAGGAAGCAGAAGAAAGCGAGAAAAAGGCTAAACACAGCATCGATGGCATC
CTGAGTGAGCGAGCCTCTGCACCTCAGTCAGATGAAGGCTCCGATATTGACTCTGAACCTGATT
TACCGCTGAAGAGGAAGCAGCGCAGGAGCAGAACCACCTTCACGGCAGAGCAGCTGGAGGAACT
GGAGCGGGCTTTCGAGAGAACCCACTACCCAGACATTTACACCAGGGAGGAGCTGGCCCAGAGG
GCGAAGCTTACCGAGGCCCGAGTGCAGGTCTGGTTTAGCAACCGCCGTGCAAGATGGAGGAAAC
AAGCTGGAGCCAATCAACTGATGGCTTTCAACCATCTCATTCCGGGGGGATTCCCTCCCACCGC
CATGCCGACCCTGCCAACATACCAGCTGTCGGAGACCTCTTACCAGCCCACGTCTATTCCACAA
GCCGTGTCAGATCCCAGTAGCACCGTCCACAGACCTCAGCCGCTTCCTCCGAGCACTGTACACC
AAAGCACTATTCCTTCGAACGCAGACAGCAGCTCTGCCTACTGCCTCCCCAGCACCAGGCATGG
ATTTTCAAGCTATACAGACAGCTTTGTGCCTCCATCGGGGCCCTCCAACCCCATGAACCCCACC
ATCGGCAATGGCCTTTCACCTCAGGTAATGGGACTTCTGACCAACCACGGTGGGGTACCGCACC
AGCCTCAGACCGACTATGCTCTCTCCCCTCTCACTGGGGGCCTGGAACCCACGACCACGGTGTC
AGCCAGCTGCAGTCAGAGACTGGAACATATGAAGAATGTGGACAGTCTGCCCACATCTCAGCCC
TATTGTCCCCCCACCTATAGCACCGCAGGCTACAGTATGGACCCTGTCACAGGCTACCAGTATG
GGCAGTATGGACAAAGTGCCTTTCATTATCTCAAGCCAGATATTGCATAAGTGAACTGTCCACT
TGGAGCCCTGTTTCCGGCCTCCACAGACTAGACATGAAGAATCTTCTCAGAAACAAAACAATAA
AAAAAATTTAAAAACAAACAAAAAATAAATGAAAAAAAATTCAGCTTTTGGGGGAGGTGGAGAC
AAAAGAGATTGATTTTCTTTCTCCAGTAGTTGCTTTCAGATTCTTTGAACATATTGGACAAAAG
GCAGGGGAGACAAGGAAGACCCAGAGCTCTAAAATGCACCATTTTTAAGACAGTGATGTAACTG
GCTACATATCAAAATGGCCCCAAATCTTTGTTGCTGATCAAAGAAGCTAAAACATTCCGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTGATT
TTCACGGGGTGGTTTGAGTAAGCAGAATGTTCCCATATATTGTAGTTGAATTCCTGAAAGTTAA
CAGGTTTGATGTCTAAGGCTGACCAAGTTTATGACATTCACACTGCTTATGTAGTGAATTGGGA
ATGGAGAAATCCTTGATTTTGACACACTGGAAACCGATATGAAAACCAACACCACCATTGTATA
GGGCACTAGACTAGATGTGAAGGATCTCCCCAGTAAATTATTACCATACCTTCATTTGTAACCT
AGTTATCAACCGATGTCCCTGACATGTCTTGTAAAAAGATGTGGGATAATGAGAAAAAAGTGTG
TTATCTGCTGTGGGGATAGATGGATGTCATTTACTTCCCAAGTCACATTGATTTGGAGGCCAGT
TGGTGGGGGGGGGGGAAGGGTATGATGTAGAGGAAGTGACACCCATCACATATCTGCTTCTCAG
CGTGCAATACTGTGTACCTCACAGATGCTTTGGCAATGGCCAAGGTGATAGAAATGAAATCAGA
ACTATATTTTTGCAGGTGTTTTTATTTTTGCAGCCCATAACTCATCGTAGTAGAGTGCAGTGAT
GTTTGCTCGTTGCCAAACAACTCACATCCTGCTTGTTCCTTTTGTTCAGAGACCATGTCTGAGA
ATCAAGCTCTCTACAGAGATGGTGTTTACATTCGTCTCTTTTCTACAAAAGGCAGGGCTAGAAC
AGAAATGTCCACGTGGCTCTCATGTACTTTTAAATTATACAACGATACCCAATATTAAAGGATA
TAGGGAACAGGTTTACATACATTCATGTGGTGACATTTAGGATGTCAATAAATCTGTGTTTTGA
AATGTTAAGAGAAAGATGAAGGTGGGCGGTGCTGTTATTTATTTCTTTCTATTCTTGGAACCAT
GAATGAGGTAGGCACAAATACATTCCCTTTAGATTTAAGAACAATGAGGTAGTGTGTTAGCAGG
ACTAGACATAGAACTGAGTTATTTTATACGTTGGGCAGGGTGATGGAACAGGAGACATAGTATC
TTTGTGTTGCAGCCTCAACCAACAATGATGTGTTGTAAAAATGTCTTTCATGTAAAAAGTGCAG
TAAATATTTACTATTTATAATGAATAAACAGTTAATGAAAATGTGCCC

hide sequence

RefSeq Acc Id:

NM_008781 ⟹ NP_032807

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	1	78,077,904 - 78,173,773 (-)	NCBI
GRCm38	1	78,101,267 - 78,197,136 (-)	NCBI
MGSCv37	1	78,097,842 - 78,193,711 (-)	RGD
Celera	1	78,585,057 - 78,620,745 (-)	RGD
cM Map	1		ENTREZGENE

Sequence:

show sequence

GCTCCCTAGTCCGGATCCCTGCACTCGGTGTCACGACGGGAGGAGACTTGGGACGTGTTCCTGC
CTCGTCACCACCCTCCCTCACCCGATCTTCGCGGTGCAGTGAGCACCTTTGCCAGTAGCCCCAG
CTGAGGGGCCGATCTGCTAGACTCGCACCAAACTCGTCCGCCCTGGGCTTGGGATCCTGCACTC
AAGGGACTCCTCTGGAGCCTGTGGACTTGGATCTATTAGCGCCCCCCTCCCCGCGCCCCGCCTC
CCTCTCTGGCCTTTTTTGGGGGAGGAGCTCTCCGAGATCCGGAGAGTTCCCGAGGGTCACCCGC
CGCACTGTGCTCGCTTTTTCGTCTCGCCTTCACCTGGATATAATTTGCGAGCGAAGCTGCCCCC
AGGATGACCACGCTGGCCGGCGCTGTGCCCAGGATGATGCGGCCCGGCCCGGGGCAGAATTACC
CACGCAGCGGCTTCCCGCTGGAAGTGTCCACCCCTCTTGGCCAGGGCCGAGTCAACCAGCTCGG
AGGAGTATTTATCAACGGCAGGCCTCTGCCCAACCATATCCGCCACAAGATAGTGGAGATGGCC
CACCATGGCATTCGGCCTTGCGTCATTTCTCGCCAGCTTCGCGTGTCCCATGGTTGCGTCTCTA
AGATCCTGTGCAGGTACCAGGAGACAGGCTCCATCCGACCTGGTGCCATCGGCGGCAGCAAACC
CAAGCAGGTGACAACGCCTGACGTGGAGAAGAAAATTGAGGAATACAAAAGAGAGAACCCGGGC
ATGTTTAGCTGGGAAATCAGAGACAAATTGCTCAAGGACGCTGTCTGTGATCGGAACACTGTGC
CCTCAGTGAGTTCTATCAGCCGCATCCTGAGGAGTAAATTTGGAAAAGGAGAAGAGGAGGAGGC
GGATCTAGAAAGGAAGGAAGCAGAAGAAAGCGAGAAAAAGGCTAAACACAGCATCGATGGCATC
CTGAGTGAGCGAGCCTCTGCACCTCAGTCAGATGAAGGCTCCGATATTGACTCTGAACCTGATT
TACCGCTGAAGAGGAAGCAGCGCAGGAGCAGAACCACCTTCACGGCAGAGCAGCTGGAGGAACT
GGAGCGGGCTTTCGAGAGAACCCACTACCCAGACATTTACACCAGGGAGGAGCTGGCCCAGAGG
GCGAAGCTTACCGAGGCCCGAGTGCAGGTCTGGTTTAGCAACCGCCGTGCAAGATGGAGGAAAC
AAGCTGGAGCCAATCAACTGATGGCTTTCAACCATCTCATTCCGGGGGGATTCCCTCCCACCGC
CATGCCGACCCTGCCAACATACCAGCTGTCGGAGACCTCTTACCAGCCCACGTCTATTCCACAA
GCCGTGTCAGATCCCAGTAGCACCGTCCACAGACCTCAGCCGCTTCCTCCGAGCACTGTACACC
AAAGCACTATTCCTTCGAACGCAGACAGCAGCTCTGCCTACTGCCTCCCCAGCACCAGGCATGG
ATTTTCAAGCTATACAGACAGCTTTGTGCCTCCATCGGGGCCCTCCAACCCCATGAACCCCACC
ATCGGCAATGGCCTTTCACCTCAGGTAATGGGACTTCTGACCAACCACGGTGGGGTACCGCACC
AGCCTCAGACCGACTATGCTCTCTCCCCTCTCACTGGGGGCCTGGAACCCACGACCACGGTGTC
AGCCAGCTGCAGTCAGAGACTGGAACATATGAAGAATGTGGACAGTCTGCCCACATCTCAGCCC
TATTGTCCCCCCACCTATAGCACCGCAGGCTACAGTATGGACCCTGTCACAGGCTACCAGTATG
GGCAGTATGGACAAAGTAAGCCTTGGACGTTCTAGGGGGTAGTTCCTCCTGGAAGGGAGAGAGA
TCACCTCTTGCTTGAGAACGGGGAACTGGAGGCATGTTTAAGCCTTTCATCCCAGTATCATTTT
TTTGTGGCAAAGACAGCTGATTGCTACAGCACAGGCTCCCTTGTGTAATTATTTGCTTAACTGA
TGTCAATAACATCTTGCAGTTATTAATTGCTGGGACGGAAAACCGGATTGTCAGTAGGTAAAAC
ACAGAGGTTGGCCAAAATGAAATAACCTCTAGCATTAGAAACACATGTTCTTAATGAGGTCAGC
GCCAGGATCATATGGGGATAAGCCCAGGACACAGAGTTGTGTCAAACTTGTCTCAGGAATAAAA
ATATTAGTCTCGATCCTTTGATACCGTGGTATTAAATATGACATTGTCAGCCTGTAGCTGATCT
TGCCCCTAACTGTGAATTGTCCCAGCATGACCTAAAAAGCTGCGTGTGTTTCCTTACAGGTGCC
TTTCATTATCTCAAGCCAGATATTGCATAAGTGAACTGTCCACTTGGAGCCCTGTTTCCGGCCT
CCACAGACTAGACATGAAGAATCTTCTCAGAAACAAAACAATAAAAAAAATTTAAAAACAAACA
AAAAATAAATGAAAAAAAATTCAGCTTTTGGGGGAGGTGGAGACAAAAGAGATTGATTTTCTTT
CTCCAGTAGTTGCTTTCAGATTCTTTGAACATATTGGACAAAAGGCAGGGGAGACAAGGAAGAC
CCAGAGCTCTAAAATGCACCATTTTTAAGACAGTGATGTAACTGGCTACATATCAAAATGGCCC
CAAATCTTTGTTGCTGATCAAAGAAGCTAAAACATTCCGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTGATTTTCACGGGGTGGTTTGAGTA
AGCAGAATGTTCCCATATATTGTAGTTGAATTCCTGAAAGTTAACAGGTTTGATGTCTAAGGCT
GACCAAGTTTATGACATTCACACTGCTTATGTAGTGAATTGGGAATGGAGAAATCCTTGATTTT
GACACACTGGAAACCGATATGAAAACCAACACCACCATTGTATAGGGCACTAGACTAGATGTGA
AGGATCTCCCCAGTAAATTATTACCATACCTTCATTTGTAACCTAGTTATCAACCGATGTCCCT
GACATGTCTTGTAAAAAGATGTGGGATAATGAGAAAAAAGTGTGTTATCTGCTGTGGGGATAGA
TGGATGTCATTTACTTCCCAAGTCACATTGATTTGGAGGCCAGTTGGTGGGGGGGGGGGAAGGG
TATGATGTAGAGGAAGTGACACCCATCACATATCTGCTTCTCAGCGTGCAATACTGTGTACCTC
ACAGATGCTTTGGCAATGGCCAAGGTGATAGAAATGAAATCAGAACTATATTTTTGCAGGTGTT
TTTATTTTTGCAGCCCATAACTCATCGTAGTAGAGTGCAGTGATGTTTGCTCGTTGCCAAACAA
CTCACATCCTGCTTGTTCCTTTTGTTCAGAGACCATGTCTGAGAATCAAGCTCTCTACAGAGAT
GGTGTTTACATTCGTCTCTTTTCTACAAAAGGCAGGGCTAGAACAGAAATGTCCACGTGGCTCT
CATGTACTTTTAAATTATACAACGATACCCAATATTAAAGGATATAGGGAACAGGTTTACATAC
ATTCATGTGGTGACATTTAGGATGTCAATAAATCTGTGTTTTGAAATGTTAAGAGAAAGATGAA
GGTGGGCGGTGCTGTTATTTATTTCTTTCTATTCTTGGAACCATGAATGAGGTAGGCACAAATA
CATTCCCTTTAGATTTAAGAACAATGAGGTAGTGTGTTAGCAGGACTAGACATAGAACTGAGTT
ATTTTATACGTTGGGCAGGGTGATGGAACAGGAGACATAGTATCTTTGTGTTGCAGCCTCAACC
AACAATGATGTGTTGTAAAAATGTCTTTCATGTAAAAAGTGCAGTAAATATTTACTATTTATAA
TGAATAAACAGTTAATGAAAATGTGCCC

hide sequence

Protein Sequences


Protein RefSeqs	NP_001152992	(Get FASTA)	NCBI Sequence Viewer
	NP_032807	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAB20359	(Get FASTA)	NCBI Sequence Viewer
	AAB20360	(Get FASTA)	NCBI Sequence Viewer
	AAH48699	(Get FASTA)	NCBI Sequence Viewer
	AAW59420	(Get FASTA)	NCBI Sequence Viewer
	BAB28278	(Get FASTA)	NCBI Sequence Viewer
	BAB29280	(Get FASTA)	NCBI Sequence Viewer
	BAC32170	(Get FASTA)	NCBI Sequence Viewer
	BAC32185	(Get FASTA)	NCBI Sequence Viewer
	BAE28229	(Get FASTA)	NCBI Sequence Viewer
	BAE28501	(Get FASTA)	NCBI Sequence Viewer
	BAE34184	(Get FASTA)	NCBI Sequence Viewer
	CAA42008	(Get FASTA)	NCBI Sequence Viewer
	EDL00430	(Get FASTA)	NCBI Sequence Viewer
	P24610	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_032807 ⟸ NM_008781
- Peptide Label:	isoform a
- UniProtKB:	Q9CXI6 (UniProtKB/Swiss-Prot), P24610 (UniProtKB/Swiss-Prot), Q3TZM4 (UniProtKB/TrEMBL), Q3UGH9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIVEMAH HGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGM FSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEESEKKAKHSIDGIL SERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRA KLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQA VSDPSSTVHRPQPLPPSTVHQSTIPSNADSSSAYCLPSTRHGFSSYTDSFVPPSGPSNPMNPTI GNGLSPQVMGLLTNHGGVPHQPQTDYALSPLTGGLEPTTTVSASCSQRLEHMKNVDSLPTSQPY CPPTYSTAGYSMDPVTGYQYGQYGQSKPWTF hide sequence

RefSeq Acc Id:	NP_001152992 ⟸ NM_001159520
- Peptide Label:	isoform b
- UniProtKB:	P24610 (UniProtKB/Swiss-Prot), Q3TZM4 (UniProtKB/TrEMBL), Q8BRF1 (UniProtKB/TrEMBL), A0A8C6HEI2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIVEMAH HGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGM FSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEESEKKAKHSIDGIL SERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRA KLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQA VSDPSSTVHRPQPLPPSTVHQSTIPSNADSSSAYCLPSTRHGFSSYTDSFVPPSGPSNPMNPTI GNGLSPQVMGLLTNHGGVPHQPQTDYALSPLTGGLEPTTTVSASCSQRLEHMKNVDSLPTSQPY CPPTYSTAGYSMDPVTGYQYGQYGQSAFHYLKPDIA hide sequence

RefSeq Acc Id:

ENSMUSP00000084320 ⟸ ENSMUST00000087086

RefSeq Acc Id:

ENSMUSP00000004994 ⟸ ENSMUST00000004994

Protein Domains

Homeobox Paired Paired box protein 7 C-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P24610-F1-model_v2	AlphaFold	P24610	1-479	view protein structure

Promoters

RGD ID:

6818214

Promoter ID:

MM_KWN:1271

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, Lung

Transcripts:

NM_001159520, NM_008781, UC007BQD.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	1	78,193,459 - 78,193,959 (-)	MPROMDB

RGD ID:

6874186

Promoter ID:

EPDNEW_M544

Type:

single initiation site

Name:

Pax3_1

Description:

Mus musculus paired box 3 , transcript variant 2, mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	1	78,197,219 - 78,197,279	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:97487	AgrOrtholog
Ensembl Genes	ENSMUSG00000004872	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSMUSP00000004994	ENTREZGENE
	ENSMUSP00000004994.10	UniProtKB/TrEMBL
	ENSMUSP00000084320	ENTREZGENE
	ENSMUSP00000084320.7	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000004994	ENTREZGENE
	ENSMUST00000004994.16	UniProtKB/TrEMBL
	ENSMUST00000087086	ENTREZGENE
	ENSMUST00000087086.7	UniProtKB/Swiss-Prot
Gene3D-CATH	1.10.10.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Homeodomain-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	Homeobox-like_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Homeobox_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Homeobox_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PAIRED_DNA_bd_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Paired_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Pax7_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PAX_fam	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	WH-like_DNA-bd_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:18505	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD	MGI:97487	ENTREZGENE
NCBI Gene	18505	ENTREZGENE
PANTHER	PAIRED BOX PROTEIN PAX-3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR45636	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Homeodomain	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PAX	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Pax7	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Pax3	PhenoGen
PRINTS	PAIREDBOX	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	HOMEOBOX_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	HOMEOBOX_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PAIRED_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PAIRED_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	HOX	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PAX	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF46689	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8C6HEI2	ENTREZGENE
	P24610	ENTREZGENE, UniProtKB/Swiss-Prot
	Q3TZM4	ENTREZGENE, UniProtKB/TrEMBL
	Q3UGH9	ENTREZGENE, UniProtKB/TrEMBL
	Q5G871_MOUSE	UniProtKB/TrEMBL
	Q8BRF1	ENTREZGENE, UniProtKB/TrEMBL
	Q9CXI6	ENTREZGENE
	Q9CZK7_MOUSE	UniProtKB/TrEMBL
UniProt Secondary	Q3UFQ9	UniProtKB/Swiss-Prot
	Q8BRE7	UniProtKB/Swiss-Prot
	Q9CXI6	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-11-26	Pax3	paired box 3		paired box gene 3	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

Mammalian Phenotype

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Imported Disease Annotations - ClinVar

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Imported Disease Annotations - OMIM

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