Slc39a4 (solute carrier family 39 (zinc transporter), member 4) - Rat Genome Database

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Gene: Slc39a4 (solute carrier family 39 (zinc transporter), member 4) Mus musculus
Analyze
Symbol: Slc39a4
Name: solute carrier family 39 (zinc transporter), member 4
RGD ID: 1552511
MGI Page MGI
Description: Enables identical protein binding activity and zinc ion transmembrane transporter activity. Involved in intracellular zinc ion homeostasis. Acts upstream of or within cellular response to zinc ion starvation. Located in apical plasma membrane and recycling endosome membrane. Is expressed in several structures, including alimentary system; early embryo; extraembryonic component; genitourinary system; and integumental system. Used to study acrodermatitis enteropathica. Human ortholog(s) of this gene implicated in acrodermatitis enteropathica. Orthologous to human SLC39A4 (solute carrier family 39 member 4).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1600025H15Rik; activated in W/Wv mouse stomach 2; AU041686; AWM; AWMS2; mAWMS2; solute carrier family 39 member 4; zi; zinc transporter ZIP4; ZIP-4; ZIP4; zrt- and Irt-like protein 4
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391576,496,583 - 76,501,579 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1576,496,583 - 76,501,584 (-)EnsemblGRCm39 Ensembl
GRCm381576,612,383 - 76,618,506 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1576,612,383 - 76,617,384 (-)EnsemblGRCm38mm10GRCm38
MGSCv371576,442,813 - 76,447,282 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361576,439,638 - 76,444,107 (-)NCBIMGSCv36mm8
Celera1578,105,998 - 78,110,467 (-)NCBICelera
Cytogenetic Map15D3NCBI
cM Map1536.16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (EXP)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxyphenyl retinamide  (EXP)
4-nitrophenol  (EXP)
6-propyl-2-thiouracil  (ISO)
acrylamide  (EXP)
actinomycin D  (EXP)
ammonium chloride  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (EXP,ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
cannabidiol  (EXP)
carbon nanotube  (EXP)
cefaloridine  (ISO)
cisplatin  (EXP,ISO)
cobalt dichloride  (ISO)
coumestrol  (ISO)
cycloheximide  (EXP)
cyclosporin A  (ISO)
DDE  (ISO)
dextran sulfate  (EXP)
dibutyl phthalate  (ISO)
diethylstilbestrol  (EXP)
dioxygen  (EXP)
epoxiconazole  (EXP)
ethyl methanesulfonate  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
furan  (ISO)
genistein  (EXP)
hydrogen peroxide  (ISO)
indole-3-methanol  (ISO)
inulin  (EXP)
irinotecan  (ISO)
lead diacetate  (ISO)
leflunomide  (ISO)
Licochalcone B  (ISO)
methimazole  (ISO)
methyl beta-cyclodextrin  (ISO)
methyl methanesulfonate  (ISO)
N(4)-hydroxycytidine  (EXP)
N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine  (EXP,ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-nitrosodiethylamine  (EXP)
nickel dichloride  (ISO)
nimesulide  (ISO)
oxycodone  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
phenobarbital  (EXP,ISO)
pirinixic acid  (EXP)
progesterone  (EXP)
propiconazole  (EXP)
quercetin  (ISO)
rotenone  (ISO)
silver atom  (EXP)
silver(0)  (EXP)
sodium arsenate  (EXP)
sodium arsenite  (ISO)
sucrose  (ISO)
tetrachloromethane  (EXP)
thiram  (ISO)
titanium dioxide  (EXP)
trichloroethene  (ISO)
triphenyl phosphate  (ISO)
triptonide  (EXP)
trovafloxacin  (EXP)
valproic acid  (ISO)
vinclozolin  (ISO)
zinc atom  (EXP,ISO)
zinc dichloride  (ISO)
zinc(0)  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal copper level  (IAGP)
abnormal craniofacial development  (IAGP)
abnormal embryo development  (IAGP)
abnormal forebrain development  (IEA)
abnormal head morphology  (IAGP)
abnormal heart left ventricle morphology  (IAGP)
abnormal hindbrain development  (IEA)
abnormal liver morphology  (IAGP)
abnormal midbrain development  (IEA)
abnormal mineral homeostasis  (IAGP)
abnormal neural tube closure  (IEA)
abnormal Paneth cell morphology  (IAGP)
abnormal skeleton morphology  (IAGP)
abnormal small intestinal crypt cell proliferation  (IAGP)
abnormal small intestinal villus morphology  (IAGP)
abnormal small intestine crypts of Lieberkuhn morphology  (IAGP)
abnormal zinc homeostasis  (IAGP)
anophthalmia  (IAGP)
decreased body size  (IAGP)
decreased bone mass  (IAGP)
decreased embryo size  (IAGP)
decreased intestinal iron level  (IAGP)
decreased intestine copper level  (IAGP)
decreased liver copper level  (IAGP)
decreased muscle weight  (IAGP)
embryonic growth retardation  (IAGP)
embryonic lethality during organogenesis, complete penetrance  (IAGP)
embryonic lethality during organogenesis, incomplete penetrance  (IAGP)
embryonic lethality prior to organogenesis  (IEA)
embryonic lethality prior to tooth bud stage  (IEA)
exencephaly  (IAGP)
hydrocephaly  (IAGP)
increased fasting circulating glucose level  (IEA)
increased liver copper level  (IAGP)
increased liver iron level  (IAGP)
lethality at weaning, complete penetrance  (IAGP)
maternal effect  (IAGP)
postnatal growth retardation  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
premature death  (IAGP)
preweaning lethality, complete penetrance  (IEA)
thick interventricular septum  (IAGP)
weight loss  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. Identification of SLC39A4, a gene involved in acrodermatitis enteropathica. Kury S, etal., Nat Genet. 2002 Jul;31(3):239-40. Epub 2002 Jun 17.
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12801924   PMID:12904583   PMID:14610273   PMID:14612438   PMID:14681479   PMID:14704853  
PMID:14709598   PMID:15054103   PMID:15065000   PMID:15322118   PMID:15358787   PMID:15489334   PMID:16141072   PMID:16141073   PMID:16618389   PMID:16652366   PMID:16682017   PMID:17483098  
PMID:18020946   PMID:18799693   PMID:18936158   PMID:19147802   PMID:20463217   PMID:20957146   PMID:21267068   PMID:21677750   PMID:21731673   PMID:21873635   PMID:22737083   PMID:24015258  
PMID:24194600   PMID:25806541   PMID:26902285   PMID:29078349   PMID:30593504   PMID:30728831   PMID:34843931   PMID:38355793  


Genomics

Comparative Map Data
Slc39a4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391576,496,583 - 76,501,579 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1576,496,583 - 76,501,584 (-)EnsemblGRCm39 Ensembl
GRCm381576,612,383 - 76,618,506 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1576,612,383 - 76,617,384 (-)EnsemblGRCm38mm10GRCm38
MGSCv371576,442,813 - 76,447,282 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361576,439,638 - 76,444,107 (-)NCBIMGSCv36mm8
Celera1578,105,998 - 78,110,467 (-)NCBICelera
Cytogenetic Map15D3NCBI
cM Map1536.16NCBI
SLC39A4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388144,412,414 - 144,416,844 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8144,409,742 - 144,416,844 (-)EnsemblGRCh38hg38GRCh38
GRCh378145,637,798 - 145,642,228 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368145,608,606 - 145,613,081 (-)NCBINCBI36Build 36hg18NCBI36
Build 348145,608,606 - 145,613,081NCBI
Celera8141,812,232 - 141,816,707 (-)NCBICelera
Cytogenetic Map8q24.3NCBI
HuRef8140,751,031 - 140,755,512 (-)NCBIHuRef
CHM1_18145,676,089 - 145,680,570 (-)NCBICHM1_1
T2T-CHM13v2.08145,582,227 - 145,586,657 (-)NCBIT2T-CHM13v2.0
Slc39a4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87110,214,017 - 110,218,202 (-)NCBIGRCr8
mRatBN7.27108,333,368 - 108,337,553 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7108,333,381 - 108,337,553 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7110,075,214 - 110,079,418 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07112,298,788 - 112,302,992 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07112,259,628 - 112,263,832 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07117,675,718 - 117,682,586 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7117,675,720 - 117,680,004 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07117,663,813 - 117,667,986 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47114,661,925 - 114,666,098 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17114,696,147 - 114,700,327 (-)NCBI
Celera7104,683,583 - 104,687,756 (-)NCBICelera
Cytogenetic Map7q34NCBI
Slc39a4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554543,040,877 - 3,046,250 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554543,041,316 - 3,047,419 (-)NCBIChiLan1.0ChiLan1.0
SLC39A4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27161,903,143 - 161,908,026 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18137,432,188 - 137,437,027 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08141,178,792 - 141,183,565 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18144,169,089 - 144,173,517 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8144,169,089 - 144,173,517 (-)Ensemblpanpan1.1panPan2
SLC39A4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11337,833,073 - 37,838,304 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1337,833,156 - 37,838,522 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1337,794,803 - 37,799,894 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01338,307,751 - 38,312,842 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1338,308,739 - 38,312,970 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11337,999,570 - 38,004,661 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01338,108,215 - 38,113,309 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01338,584,583 - 38,589,678 (-)NCBIUU_Cfam_GSD_1.0
Slc39a4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303411,386 - 416,321 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364707,838,030 - 7,842,262 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364707,836,612 - 7,842,262 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC39A4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4372,660 - 378,516 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14372,681 - 378,519 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24464,005 - 469,123 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC39A4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18138,622,100 - 138,626,749 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8138,622,224 - 138,626,376 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660391,229,126 - 1,234,212 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc39a4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473512,434,169 - 12,438,510 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473512,433,024 - 12,438,406 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc39a4
65 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:207
Count of miRNA genes:178
Interacting mature miRNAs:182
Transcripts:ENSMUST00000073428
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301779Dpml_mdopamine loss (mouse)Not determined155100469476794493Mouse
38501067Tip3_mtuberculosis immunophenotype 3, IFN-g level (mouse)155356339689584203Mouse
1300627Sluc26_msusceptibility to lung cancer 26 (mouse)Not determined1570345653104073951Mouse
27226777Tibl8_mtibia length 8, 5 week (mouse)15692948184584201Mouse
15092079Igly6_mIgG glycosylation 6, GP6 (mouse)157410054082674156Mouse
4142252Tailaq4_mtail length adjusted QTL 4 (mouse)Not determined348969478601286Mouse
1357703Vtbt17_mvertebral trabecular bone trait 17 (mouse)Not determined154455331378553437Mouse
13504731Cath5_mcarotid atherosclerosis 5 (mouse)155478912988789129Mouse
1558786Msq1_mMAV-1 susceptibility QTL 1 (mouse)Not determined156338964681086436Mouse
12791003Aath8_maortic arch atherosclerosis 8 (mouse)1573430144104073951Mouse
1301006Hfib1_mhepatic fibrogenesis 1 (mouse)Not determined154730633481306479Mouse
27095936Ulnl4_mulna length 4, 5 week (mouse)155676339687684201Mouse
10755515Amzn3_manatomical modifier of Zfp423 3 (mouse)154638964680389845Mouse
1301171Brm2_mbrachyury modifier 2 (mouse)Not determined156552537699525499Mouse
1301429Pcir3_mperiosteal circumference 3 (mouse)Not determined154846536282465496Mouse
1302197Bhr2_mbronchial hyperresponsiveness 2 (mouse)Not determined1564306334103425899Mouse
26884402Cvht9_mcranial vault height 9, 16 week (mouse)154216339695497881Mouse
1357756Alaa4_malopecia areata 4 (mouse)Not determined154638964680389845Mouse
1302074Bmd4_mbone mineral density 4 (mouse)Not determined1556186708103425899Mouse
1301433Rapop5_mradiation-induced apoptosis 5 (mouse)Not determined15927302279474762Mouse
26884399Humsd1_mhumerus midshaft diameter 1, 5 week (mouse)1548363396101708435Mouse
26884397Humsd5_mhumerus midshaft diameter 5, 10 week (mouse)154836339698397881Mouse
1300648Dbsty4_mdiabesity 4 (mouse)Not determined1570349271104073951Mouse
10412067Pain2_mpain 2 (mouse)Not determined155164533985645626Mouse
4141952W3q7_mweight 3 weeks QTL 7 (mouse)Not determined348969478601286Mouse
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156129481100797881Mouse
27226717Tibw4_mtibia width 4, proximal, 10 week (mouse)15612948178684200Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402203102896555Mouse
4142198Hbtq_mhabituation QTL (mouse)Not determined155116070885160833Mouse
1357407Pfat4_mpredicted fat percentage 4 (mouse)8.6Body fat amountpredicted fat percentage155711700591117153Mouse
4142448Tailq6_mtail length QTL 6 (mouse)Not determined348969478601286Mouse
1357659Epfpq4_mepididymal fat percentage QTL 4 (mouse)Not determined15348969478601286Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800146102008435Mouse
1301568Tria2_mT-cell receptor induced activation 2 (mouse)Not determined154485914178859281Mouse
1302080Szs13_mseizure susceptibility 13 (mouse)Not determined155168583285694449Mouse
1300800Ses3_msalmonella enteritidis susceptibility 3 (mouse)Not determined155711700591117153Mouse
10045637Heal27_mwound healing/regeneration 29 (mouse)Not determined155141836185418511Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578416103425899Mouse
4141921Pstc3_mperiosteal circumference 3 (mouse)Not determined1567270698101270847Mouse
1301708Cocrb14_mcocaine related behavior 14 (mouse)Not determined155180651585806651Mouse
12880420V25Dq8_mvitamin D inactive form serum level QTL 8 (mouse)156158420095584200Mouse
1302002Cocia2_mcocaine induced activation 2 (mouse)Not determined157237245979899178Mouse
14747011Mancz13_mmandible centroid size 13 (mouse)1572382669104073951Mouse
1357559Scfq2_msubcutaneous fat pad weight QTL 2 (mouse)Not determined15348969478601286Mouse
1300726Pitm4_mprion incubation time 4 (mouse)Not determined1570349271104073951Mouse
1301119Drb7_mdopamine receptor binding 7 (mouse)Not determined156533657899341028Mouse
4141135Cia35_mcollagen induced arthritis 35 (mouse)Not determined156481182698811946Mouse
27226734Tibmd5_mtibia midshaft diameter 5, 10 week (mouse)15612948186684201Mouse
13442492Mecth2_mmechanosensation threshold 2 (mouse)157466284979387201Mouse
1301601Faq9_mfluctuating asymmetry QTL 9 (mouse)Not determined156316390397163995Mouse
1301472Pain1_mpain 1 (mouse)Not determined157532084690813185Mouse
27226729Tibmd2_mtibia midshaft diameter 2, 5 week (mouse)153800024486684201Mouse
1301860Gct3_mgranulosa cell tumorigenesis 3 (mouse)Not determined154740959681409691Mouse
1300844Emo2_memotionality 2 (mouse)Not determined157237245976794493Mouse

Markers in Region
AU041686  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381576,612,553 - 76,612,851UniSTSGRCm38
MGSCv371576,442,983 - 76,443,281UniSTSGRCm37
Celera1578,106,168 - 78,106,466UniSTS
Cytogenetic Map15D3UniSTS
Whitehead/MRC_RH15648.4UniSTS
Slc39a4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map15D3UniSTS
cM Map1536.16UniSTS


Sequence


Ensembl Acc Id: ENSMUST00000073428   ⟹   ENSMUSP00000073134
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1576,496,583 - 76,501,048 (-)Ensembl
GRCm38.p6 Ensembl1576,612,383 - 76,616,848 (-)Ensembl
Ensembl Acc Id: ENSMUST00000229613
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1576,498,017 - 76,498,506 (-)Ensembl
GRCm38.p6 Ensembl1576,613,817 - 76,614,306 (-)Ensembl
Ensembl Acc Id: ENSMUST00000230317
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1576,498,740 - 76,500,630 (-)Ensembl
GRCm38.p6 Ensembl1576,614,540 - 76,616,430 (-)Ensembl
Ensembl Acc Id: ENSMUST00000230977   ⟹   ENSMUSP00000155442
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1576,496,591 - 76,501,584 (-)Ensembl
GRCm38.p6 Ensembl1576,612,391 - 76,617,384 (-)Ensembl
RefSeq Acc Id: NM_028064   ⟹   NP_082340
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,496,583 - 76,501,070 (-)NCBI
GRCm381576,612,383 - 76,616,870 (-)NCBI
MGSCv371576,442,813 - 76,447,282 (-)RGD
Celera1578,105,998 - 78,110,467 (-)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006521427   ⟹   XP_006521490
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391576,496,583 - 76,501,579 (-)NCBI
GRCm381576,612,383 - 76,618,506 (-)NCBI
Sequence:
RefSeq Acc Id: NP_082340   ⟸   NM_028064
- Peptide Label: precursor
- UniProtKB: Q8CHL4 (UniProtKB/Swiss-Prot),   Q78IQ7 (UniProtKB/Swiss-Prot),   Q3U263 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006521490   ⟸   XM_006521427
- Peptide Label: isoform X1
- UniProtKB: Q3U263 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000155442   ⟸   ENSMUST00000230977
Ensembl Acc Id: ENSMUSP00000073134   ⟸   ENSMUST00000073428
Protein Domains
Zinc transporter ZIP4 N-terminal   Zinc transporter ZIP4/12 EF-hand

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q78IQ7-F1-model_v2 AlphaFold Q78IQ7 1-660 view protein structure

Promoters
RGD ID:6826492
Promoter ID:MM_KWN:18890
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   Liver,   Lung
Transcripts:NM_028064
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361576,447,161 - 76,448,062 (-)MPROMDB
RGD ID:8684134
Promoter ID:EPDNEW_M20098
Type:initiation region
Name:Slc39a4_1
Description:Mus musculus solute carrier family 39 , member 4 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381576,616,848 - 76,616,908EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1919277 AgrOrtholog
Ensembl Genes ENSMUSG00000063354 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000073428.7 UniProtKB/TrEMBL
  ENSMUST00000230977 ENTREZGENE
  ENSMUST00000230977.2 UniProtKB/Swiss-Prot
InterPro ZIP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZIP4_12_EF-hand UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZIP4_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZIP_Transporter UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:72027 UniProtKB/Swiss-Prot
MGD MGI:1919277 ENTREZGENE
NCBI Gene 72027 ENTREZGENE
PANTHER SOLUTE CARRIER FAMILY 39 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC TRANSPORTER ZIP4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam EF-hand_Zip UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Zip UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZIP4_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Slc39a4 PhenoGen
UniProt A0A2U3TZ56_MOUSE UniProtKB/TrEMBL
  Q3U263 ENTREZGENE, UniProtKB/TrEMBL
  Q78IQ7 ENTREZGENE
  Q8CHL4 ENTREZGENE
  S39A4_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q8CHL4 UniProtKB/Swiss-Prot