Letmd1 (LETM1 domain containing 1) - Rat Genome Database

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Gene: Letmd1 (LETM1 domain containing 1) Mus musculus
Analyze
Symbol: Letmd1
Name: LETM1 domain containing 1
RGD ID: 1552508
MGI Page MGI
Description: Enables molecular adaptor activity. Involved in mitochondrion organization and positive regulation of cold-induced thermogenesis. Located in mitochondrial inner membrane. Is active in nucleus. Is expressed in several structures, including brain; cranial ganglion; dorsal root ganglion; and retina. Orthologous to human LETMD1 (LETM1 domain containing 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1110019O13Rik; AI593524; BB130465; BB235638; cervical cancer receptor; HCCR; HCCR-; HCCR-2; HCCR1; LETM1 domain-containing protein 1; MCC-32; Mccr
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3915100,360,302 - 100,377,133 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl15100,366,904 - 100,377,045 (+)EnsemblGRCm39 Ensembl
GRCm3815100,462,421 - 100,479,252 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl15100,469,023 - 100,479,164 (+)EnsemblGRCm38mm10GRCm38
MGSCv3715100,299,465 - 100,309,683 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3615100,297,128 - 100,307,198 (+)NCBIMGSCv36mm8
Celera15102,621,292 - 102,631,510 (+)NCBICelera
Cytogenetic Map15F1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Oncoprotein HCCR-1 expression in breast cancer is well correlated with known breast cancer prognostic factors including the HER2 overexpression, p53 mutation, and ER/PR status. Ha SA, etal., BMC Cancer. 2009 Feb 11;9:51.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. Identification and differential expression of novel human cervical cancer oncogene HCCR-2 in human cancers and its involvement in p53 stabilization. Ko J, etal., Oncogene. 2003 Jul 24;22(30):4679-89.
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:14691545   PMID:15226823   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16949218   PMID:18614015  
PMID:18799693   PMID:20196787   PMID:21267068   PMID:21873635   PMID:24952961   PMID:30498063   PMID:31980577   PMID:32325033   PMID:32581705   PMID:34669999   PMID:34910916   PMID:35817133  
PMID:36334589   PMID:36417873  


Genomics

Comparative Map Data
Letmd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3915100,360,302 - 100,377,133 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl15100,366,904 - 100,377,045 (+)EnsemblGRCm39 Ensembl
GRCm3815100,462,421 - 100,479,252 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl15100,469,023 - 100,479,164 (+)EnsemblGRCm38mm10GRCm38
MGSCv3715100,299,465 - 100,309,683 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3615100,297,128 - 100,307,198 (+)NCBIMGSCv36mm8
Celera15102,621,292 - 102,631,510 (+)NCBICelera
Cytogenetic Map15F1NCBI
LETMD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381251,048,220 - 51,068,958 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1251,047,962 - 51,060,424 (+)EnsemblGRCh38hg38GRCh38
GRCh371251,442,003 - 51,462,741 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361249,728,351 - 49,740,474 (+)NCBINCBI36Build 36hg18NCBI36
Build 341249,728,398 - 49,740,468NCBI
Celera1250,244,071 - 50,256,194 (+)NCBICelera
Cytogenetic Map12q13.12NCBI
HuRef1248,474,666 - 48,486,493 (+)NCBIHuRef
CHM1_11251,408,361 - 51,420,485 (+)NCBICHM1_1
T2T-CHM13v2.01251,011,103 - 51,031,877 (+)NCBIT2T-CHM13v2.0
Letmd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27131,584,241 - 131,597,797 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7131,584,259 - 131,597,796 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7133,386,530 - 133,396,013 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.07135,612,107 - 135,621,590 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.07135,525,758 - 135,535,244 (+)NCBIRnor_WKY
Rnor_6.07142,106,364 - 142,119,900 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7142,106,465 - 142,119,899 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07139,913,885 - 139,927,371 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47139,172,373 - 139,181,857 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera7128,061,659 - 128,071,143 (+)NCBICelera
Cytogenetic Map7q36NCBI
Letmd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555471,574,265 - 1,582,786 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555471,574,210 - 1,586,432 (+)NCBIChiLan1.0ChiLan1.0
LETMD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan11243,122,320 - 43,134,785 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01237,685,741 - 37,705,104 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11238,587,366 - 38,609,810 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1238,597,728 - 38,609,810 (-)Ensemblpanpan1.1panPan2
LETMD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1273,761,880 - 3,770,158 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl273,761,203 - 3,770,103 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2742,486,087 - 42,494,364 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0273,809,305 - 3,817,581 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl273,809,309 - 3,817,542 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1273,776,041 - 3,784,312 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0273,763,396 - 3,771,684 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02742,882,837 - 42,891,111 (+)NCBIUU_Cfam_GSD_1.0
Letmd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494564,468,798 - 64,480,237 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365128,684,587 - 8,694,074 (+)EnsemblSpeTri2.0
SpeTri2.0NW_0049365128,684,597 - 8,694,074 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LETMD1
(Sus scrofa - pig)		 No map positions available.
LETMD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11147,258,097 - 47,270,474 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1147,258,084 - 47,270,756 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037198,830,226 - 198,842,605 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Letmd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248161,158,662 - 1,170,988 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248161,148,634 - 1,170,981 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Letmd1
647 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:519
Count of miRNA genes:363
Interacting mature miRNAs:406
Transcripts:ENSMUST00000037001
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156129481100797881Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402203102896555Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800146102008435Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578416103425899Mouse
26884399Humsd1_mhumerus midshaft diameter 1, 5 week (mouse)1548363396101708435Mouse
1302074Bmd4_mbone mineral density 4 (mouse)Not determined1556186708103425899Mouse
1302197Bhr2_mbronchial hyperresponsiveness 2 (mouse)Not determined1564306334103425899Mouse
4141921Pstc3_mperiosteal circumference 3 (mouse)Not determined1567270698101270847Mouse
1300627Sluc26_msusceptibility to lung cancer 26 (mouse)Not determined1570345653104073951Mouse
1300648Dbsty4_mdiabesity 4 (mouse)Not determined1570349271104073951Mouse
1300726Pitm4_mprion incubation time 4 (mouse)Not determined1570349271104073951Mouse
14747011Mancz13_mmandible centroid size 13 (mouse)1572382669104073951Mouse
12791003Aath8_maortic arch atherosclerosis 8 (mouse)1573430144104073951Mouse
1300851Heal4_mwound healing/regeneration 4 (mouse)Not determined1577527592104073951Mouse
4142060W3q6_mweight 3 weeks QTL 6 (mouse)Not determined78601103102901704Mouse
1357894Epfpq3_mepididymal fat percentage QTL 3 (mouse)Not determined1578601103102901704Mouse
14928306Manh79_mmandible shape 79 (mouse)1578847557104073951Mouse
12880411V125Dq11_mvitamin D active form serum level QTL 11 (mouse)1578897881104073951Mouse
10402490Dipa5_mdrug induced psychomotor activation 5 (mouse)Not determined1579163411104073951Mouse
4141897Imrfq2_mimmune response to Factor IX QTL 2 (mouse)Not determined79908940104073951Mouse
1301284Cosz3_mcocaine seizure 3 (mouse)Not determined1580313634104073951Mouse
4141902Cia37_mcollagen induced arthritis 37 (mouse)Not determined1580884933104073951Mouse
1300974Pgia9_mproteoglycan induced arthritis 9 (mouse)Not determined1580884933104073951Mouse
4141511Gdcr1_mglycerolphosphate dehydrogenase regulator 1 (mouse)Not determined82615474104073951Mouse
11530037Sluc34a_msusceptibility to lung cancer 34a (mouse)1585896437104073951Mouse
11530038Sluc34b_msusceptibility to lung cancer 34b (mouse)1585896437104073951Mouse
1357614Bmca_mbile mucin accumulation (mouse)Not determined1585896437104073951Mouse
1301918Skull22_mskull morphology 22 (mouse)Not determined1585901546104073951Mouse
4141581Dshv1_mdorsal hippocampal volume 1 (mouse)Not determined92788640103425899Mouse
14700689Carg5_mCandida albicans resistance gene 5 (mouse)1597697881103008427Mouse
11528547Sluc34_msusceptibility to lung cancer 34 (mouse)1597884933102896555Mouse

Markers in Region
BB235638  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3815100,470,587 - 100,470,689UniSTSGRCm38
MGSCv3715100,301,018 - 100,301,120UniSTSGRCm37
Celera15102,622,845 - 102,622,947UniSTS
Cytogenetic Map15F1UniSTS
Whitehead/MRC_RH15893.75UniSTS
BB130465  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3815100,471,744 - 100,471,864UniSTSGRCm38
MGSCv3715100,302,175 - 100,302,295UniSTSGRCm37
Celera15102,624,002 - 102,624,122UniSTS
Cytogenetic Map15F1UniSTS
Whitehead/MRC_RH15893.97UniSTS
AI593524  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3815100,478,900 - 100,478,991UniSTSGRCm38
MGSCv3715100,309,331 - 100,309,422UniSTSGRCm37
Celera15102,631,158 - 102,631,249UniSTS
Cytogenetic Map15F1UniSTS
Whitehead/MRC_RH15895.36UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001357982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_134093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006521320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006521322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017316739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030248726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036159561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036159562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC139571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF287293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF401483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK041312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK045256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC021361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY293457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN721316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000037001   ⟹   ENSMUSP00000037546
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl15100,366,904 - 100,377,045 (+)Ensembl
GRCm38.p6 Ensembl15100,469,023 - 100,479,164 (+)Ensembl
RefSeq Acc Id: ENSMUST00000229012   ⟹   ENSMUSP00000155243
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl15100,366,996 - 100,377,044 (+)Ensembl
GRCm38.p6 Ensembl15100,469,115 - 100,479,163 (+)Ensembl
RefSeq Acc Id: ENSMUST00000229372
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl15100,374,623 - 100,376,008 (+)Ensembl
GRCm38.p6 Ensembl15100,476,742 - 100,478,127 (+)Ensembl
RefSeq Acc Id: ENSMUST00000229457
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl15100,372,941 - 100,373,664 (+)Ensembl
GRCm38.p6 Ensembl15100,475,060 - 100,475,783 (+)Ensembl
RefSeq Acc Id: ENSMUST00000229596
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl15100,367,026 - 100,376,008 (+)Ensembl
GRCm38.p6 Ensembl15100,469,145 - 100,478,127 (+)Ensembl
RefSeq Acc Id: ENSMUST00000229648   ⟹   ENSMUSP00000155084
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl15100,366,988 - 100,375,956 (+)Ensembl
GRCm38.p6 Ensembl15100,469,107 - 100,478,075 (+)Ensembl
RefSeq Acc Id: ENSMUST00000230294   ⟹   ENSMUSP00000155807
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl15100,366,916 - 100,377,044 (+)Ensembl
GRCm38.p6 Ensembl15100,469,035 - 100,479,163 (+)Ensembl
RefSeq Acc Id: ENSMUST00000230339
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl15100,366,941 - 100,368,116 (+)Ensembl
GRCm38.p6 Ensembl15100,469,060 - 100,470,235 (+)Ensembl
RefSeq Acc Id: ENSMUST00000230579
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl15100,370,439 - 100,374,901 (+)Ensembl
GRCm38.p6 Ensembl15100,472,558 - 100,477,020 (+)Ensembl
RefSeq Acc Id: ENSMUST00000231001
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl15100,370,288 - 100,377,045 (+)Ensembl
GRCm38.p6 Ensembl15100,472,407 - 100,479,164 (+)Ensembl
RefSeq Acc Id: NM_001357982   ⟹   NP_001344911
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3915100,366,892 - 100,377,133 (+)NCBI
GRCm3815100,469,011 - 100,479,252 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001357983   ⟹   NP_001344912
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3915100,366,892 - 100,377,133 (+)NCBI
GRCm3815100,469,011 - 100,479,252 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001357984   ⟹   NP_001344913
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3915100,366,892 - 100,377,133 (+)NCBI
GRCm3815100,469,011 - 100,479,252 (+)NCBI
Sequence:
RefSeq Acc Id: NM_134093   ⟹   NP_598854
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3915100,366,892 - 100,377,133 (+)NCBI
GRCm3815100,469,011 - 100,479,252 (+)NCBI
MGSCv3715100,299,465 - 100,309,683 (+)RGD
Celera15102,621,292 - 102,631,510 (+)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006521320   ⟹   XP_006521383
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3915100,366,665 - 100,377,045 (+)NCBI
GRCm3815100,468,784 - 100,479,164 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006521322   ⟹   XP_006521385
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3915100,360,302 - 100,377,046 (+)NCBI
GRCm3815100,469,108 - 100,479,165 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017316739   ⟹   XP_017172228
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3915100,360,302 - 100,377,046 (+)NCBI
GRCm3815100,462,421 - 100,479,165 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030248726   ⟹   XP_030104586
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3915100,360,302 - 100,377,045 (+)NCBI
GRCm3815100,469,027 - 100,479,164 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036159561   ⟹   XP_036015454
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3915100,360,302 - 100,377,046 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036159562   ⟹   XP_036015455
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3915100,360,302 - 100,377,046 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_598854   ⟸   NM_134093
- Peptide Label: isoform 1
- UniProtKB: Q8VDS9 (UniProtKB/Swiss-Prot),   Q924L1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006521383   ⟸   XM_006521320
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006521385   ⟸   XM_006521322
- Peptide Label: isoform X2
- UniProtKB: Q924L1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017172228   ⟸   XM_017316739
- Peptide Label: isoform X2
- UniProtKB: Q924L1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001344913   ⟸   NM_001357984
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001344912   ⟸   NM_001357983
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001344911   ⟸   NM_001357982
- Peptide Label: isoform 2
RefSeq Acc Id: XP_030104586   ⟸   XM_030248726
- Peptide Label: isoform X4
RefSeq Acc Id: ENSMUSP00000155807   ⟸   ENSMUST00000230294
RefSeq Acc Id: ENSMUSP00000037546   ⟸   ENSMUST00000037001
RefSeq Acc Id: ENSMUSP00000155084   ⟸   ENSMUST00000229648
RefSeq Acc Id: ENSMUSP00000155243   ⟸   ENSMUST00000229012
RefSeq Acc Id: XP_036015454   ⟸   XM_036159561
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036015455   ⟸   XM_036159562
- Peptide Label: isoform X3
Protein Domains
Letm1 RBD

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q924L1-F1-model_v2 AlphaFold Q924L1 1-360 view protein structure

Promoters
RGD ID:6826148
Promoter ID:MM_KWN:19741
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   Spleen
Transcripts:AK019939_5330439K02RIK,   NM_134093,   UC007XRG.1,   UC007XRH.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3615100,299,136 - 100,299,636 (+)MPROMDB
RGD ID:8685052
Promoter ID:EPDNEW_M20557
Type:multiple initiation site
Name:Letmd1_1
Description:Mus musculus LETM1 domain containing 1 , transcript variant 2,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3815100,469,115 - 100,469,175EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1915864 AgrOrtholog
Ensembl Genes ENSMUSG00000037353 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000037546 ENTREZGENE
  ENSMUSP00000037546.9 UniProtKB/Swiss-Prot
  ENSMUSP00000155084 ENTREZGENE
  ENSMUSP00000155084.2 UniProtKB/Swiss-Prot
  ENSMUSP00000155243.2 UniProtKB/TrEMBL
  ENSMUSP00000155807 ENTREZGENE
  ENSMUSP00000155807.2 UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000037001 ENTREZGENE
  ENSMUST00000037001.10 UniProtKB/Swiss-Prot
  ENSMUST00000229012.2 UniProtKB/TrEMBL
  ENSMUST00000229648 ENTREZGENE
  ENSMUST00000229648.2 UniProtKB/Swiss-Prot
  ENSMUST00000230294 ENTREZGENE
  ENSMUST00000230294.2 UniProtKB/Swiss-Prot
InterPro LETM1/MDM38-like UniProtKB/Swiss-Prot
  LETM1_RBD UniProtKB/Swiss-Prot
KEGG Report mmu:68614 UniProtKB/Swiss-Prot
MGD MGI:1915864 ENTREZGENE
NCBI Gene 68614 ENTREZGENE
PANTHER LETM1 DOMAIN-CONTAINING PROTEIN 1 UniProtKB/Swiss-Prot
  PTHR14009 UniProtKB/Swiss-Prot
Pfam LETM1 UniProtKB/Swiss-Prot
PhenoGen Letmd1 PhenoGen
PROSITE LETM1_RBD UniProtKB/Swiss-Prot
UniProt A0A2R8VK53_MOUSE UniProtKB/TrEMBL
  LTMD1_MOUSE UniProtKB/Swiss-Prot
  Q8VDS9 ENTREZGENE
  Q924L1 ENTREZGENE
UniProt Secondary Q3TF05 UniProtKB/Swiss-Prot
  Q3U3M7 UniProtKB/Swiss-Prot
  Q8BLG9 UniProtKB/Swiss-Prot
  Q8K1F7 UniProtKB/Swiss-Prot
  Q8VDS9 UniProtKB/Swiss-Prot