Tfcp2l1 (transcription factor CP2-like 1) - Rat Genome Database

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Gene: Tfcp2l1 (transcription factor CP2-like 1) Mus musculus
Analyze
Symbol: Tfcp2l1
Name: transcription factor CP2-like 1
RGD ID: 1552211
MGI Page MGI
Description: Enables RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including determination of adult lifespan; epithelial cell maturation; and negative regulation of transcription by RNA polymerase II. Located in cytoplasm; membrane; and nucleus. Is expressed in early conceptus; genitourinary system; heart; and limb. Orthologous to human TFCP2L1 (transcription factor CP2 like 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1810030F05Rik; 4932442M07Rik; AA575098; Cp2; CP2-related transcriptional repressor 1; Cp2l1; Crtr; Crtr-1; D930018N21Rik; LBP; LBP-9; Tcfcp2; Tcfcp2-related transcriptional repressor 1; Tcfcp2l1; transcription factor CP2-like protein 1; transcription repressor CRTR-1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391118,555,646 - 118,612,898 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1118,555,675 - 118,612,898 (+)EnsemblGRCm39 Ensembl
GRCm381118,627,923 - 118,685,168 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1118,627,945 - 118,685,168 (+)EnsemblGRCm38mm10GRCm38
MGSCv371120,524,522 - 120,581,745 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361120,455,496 - 120,512,714 (+)NCBIMGSCv36mm8
Celera1121,290,045 - 121,347,496 (+)NCBICelera
Cytogenetic Map1E2.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-hydroxypropanoic acid  (ISO)
3,7-dihydropurine-6-thione  (ISO)
4-hydroxyphenyl retinamide  (EXP)
5-fluorouracil  (EXP)
acetic acid  (EXP)
acrylamide  (ISO)
aflatoxin B1  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (EXP)
bisphenol A  (EXP,ISO)
butanal  (ISO)
calcitriol  (ISO)
carbon nanotube  (EXP)
CGP 52608  (ISO)
chlordecone  (EXP)
chrysene  (EXP)
ciguatoxin CTX1B  (EXP)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
deoxynivalenol  (ISO)
dibenz[a,h]anthracene  (EXP)
diethylstilbestrol  (EXP)
dimethylarsinous acid  (ISO)
dorsomorphin  (ISO)
endosulfan  (ISO)
entinostat  (ISO)
ethanol  (EXP,ISO)
fenthion  (EXP)
furan  (ISO)
lead diacetate  (ISO)
mercaptopurine  (ISO)
methylmercury chloride  (ISO)
N-ethyl-N-nitrosourea  (EXP)
nickel atom  (ISO)
okadaic acid  (EXP)
ozone  (EXP)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
phenobarbital  (EXP)
PhIP  (ISO)
progesterone  (EXP,ISO)
propanal  (ISO)
purine-6-thiol  (ISO)
rac-lactic acid  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
tamoxifen  (EXP)
testosterone  (EXP)
tetrachloromethane  (ISO)
tetraphene  (EXP)
thioacetamide  (ISO)
titanium dioxide  (EXP)
trichostatin A  (ISO)
triptonide  (EXP)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8743579   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11073954   PMID:11076861   PMID:11839785   PMID:12477932   PMID:12520002   PMID:12666198   PMID:12904583   PMID:14610273  
PMID:15778975   PMID:16141072   PMID:16141073   PMID:16602821   PMID:17079272   PMID:17967808   PMID:18287559   PMID:18799693   PMID:20059953   PMID:20211142   PMID:20362541   PMID:20412781  
PMID:20661472   PMID:21267068   PMID:21731673   PMID:21806977   PMID:21873635   PMID:22432025   PMID:22967998   PMID:22988430   PMID:23942233   PMID:23942238   PMID:24859004   PMID:24937428  
PMID:26206133   PMID:26321140   PMID:26751783   PMID:26906118   PMID:27820600   PMID:28577314   PMID:28982712   PMID:30782842   PMID:33452132   PMID:34555410   PMID:34731635   PMID:35729116  
PMID:36504370  


Genomics

Comparative Map Data
Tfcp2l1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391118,555,646 - 118,612,898 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1118,555,675 - 118,612,898 (+)EnsemblGRCm39 Ensembl
GRCm381118,627,923 - 118,685,168 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1118,627,945 - 118,685,168 (+)EnsemblGRCm38mm10GRCm38
MGSCv371120,524,522 - 120,581,745 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361120,455,496 - 120,512,714 (+)NCBIMGSCv36mm8
Celera1121,290,045 - 121,347,496 (+)NCBICelera
Cytogenetic Map1E2.3NCBI
TFCP2L1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382121,216,587 - 121,285,202 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl2121,216,587 - 121,285,202 (-)EnsemblGRCh38hg38GRCh38
GRCh372121,974,163 - 122,042,778 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362121,695,004 - 121,759,245 (-)NCBINCBI36Build 36hg18NCBI36
Build 342121,694,763 - 121,759,005NCBI
Celera2115,298,911 - 115,367,497 (-)NCBICelera
Cytogenetic Map2q14.2NCBI
HuRef2114,296,716 - 114,365,195 (-)NCBIHuRef
CHM1_12121,978,265 - 122,046,863 (-)NCBICHM1_1
T2T-CHM13v2.02121,651,879 - 121,720,501 (-)NCBIT2T-CHM13v2.0
Tfcp2l1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21329,733,813 - 29,793,870 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1329,733,840 - 29,793,870 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1332,316,989 - 32,377,008 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01333,604,823 - 33,664,840 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01330,883,335 - 30,943,244 (+)NCBIRnor_WKY
Rnor_6.01334,610,689 - 34,671,617 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1334,610,684 - 34,670,124 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01339,741,256 - 39,801,251 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41331,288,228 - 31,401,482 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11331,287,875 - 31,343,809 (+)NCBI
Celera1329,637,385 - 29,697,059 (+)NCBICelera
Cytogenetic Map13q11NCBI
Tfcp2l1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554598,657,188 - 8,717,133 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554598,657,188 - 8,716,878 (+)NCBIChiLan1.0ChiLan1.0
TFCP2L1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B121,729,061 - 121,791,512 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B121,729,061 - 121,792,281 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B8,155,839 - 8,219,017 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
TFCP2L1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11928,869,454 - 28,923,835 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1928,869,453 - 28,922,354 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1929,126,589 - 29,181,499 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01930,243,716 - 30,298,640 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1930,243,677 - 30,296,099 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11928,932,623 - 28,987,810 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01929,103,229 - 29,158,240 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01930,283,610 - 30,339,009 (+)NCBIUU_Cfam_GSD_1.0
Tfcp2l1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530392,196,356 - 92,252,237 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646949,365,528 - 49,420,328 (+)EnsemblSpeTri2.0
SpeTri2.0NW_00493646949,365,582 - 49,420,307 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TFCP2L1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1530,072,172 - 30,137,083 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11530,072,142 - 30,131,810 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21535,005,991 - 35,064,967 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TFCP2L1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1109,010,583 - 9,079,869 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl109,011,036 - 9,072,084 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606113,617,910 - 13,688,089 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tfcp2l1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473223,855,336 - 23,915,589 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473223,855,361 - 23,911,731 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2708
Count of miRNA genes:904
Interacting mature miRNAs:1225
Transcripts:ENSMUST00000027629
Prediction methods:Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139132808126445310Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
1301748Abbp1_mA/J and C57BL/6 blood pressure 1 (mouse)Not determined162946755120529678Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
1300841Ssial1_msusceptibility to sialadenitis 1 (mouse)Not determined163920002153557562Mouse
27095918Ulnl1_mulna length 1, 5 week (mouse)167339159129727737Mouse
1300989Lrdg1_mlight induced retinal degeneration 1 (mouse)Not determined173755175147125370Mouse
4141914Gcsfis_mG-CSF induced splenomegaly (mouse)Not determined74516235148715579Mouse
1357847Jckm2_mjuvenile cystic kidney modifier 2 (mouse)Not determined174991977133290937Mouse
27095931Pglq1_mpelvic girdle length QTL 1, 5 week (mouse)175976637128527737Mouse
27095928Pglq6_mpelvic girdle length QTL 6, 10 week (mouse)175976637148775742Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)175976637181327565Mouse
13452395Leusq2_mleucocytosis susceptibility QTL 2 (mouse)180245593126386517Mouse
1301350Nidd4k_mNidd4 on KK-A (mouse)Not determined782291982147125370Mouse
1357439Popoa_mpremature ovulation and primary oocyte arrest (mouse)Not determined182643189135615379Mouse
12790991Aath1_maortic arch atherosclerosis 1 (mouse)186483929120483929Mouse
4141329Mleu1_mmyeloid leukemia survival 1 (mouse)Not determined89786512123786512Mouse
15039333Nmrs1_mNAFLD-associated magnetic resonance shift 1 (mouse)189786512123786512Mouse
1357760Synch3_msynechia 3 (mouse)Not determined192901442126901550Mouse
4141627Bwq7_mbody weight, QTL 7 (mouse)Not determined192940909124497796Mouse
12879491Hfnq1_mhair follicle number QTL 1 (mouse)193310310123636759Mouse
10045976Tir6_mtrypanosome infection response 6 (mouse)Not determined193536855120529678Mouse
27095913Scvln2_msacral vertebrae length 2, 5 week (mouse)194127725148775742Mouse
27095901Scvln8_msacral vertebrae length 2, 10 week (mouse)194127725172027567Mouse
27226779Tibl1_mtibia length 1, 5 week (mouse)195527725162027569Mouse
1301123Cd8mts2_mCD8 memory T cell subset 2 (mouse)Not determined196618386130618557Mouse
1301753Tir3a_mtrypansomiasis infection response 3a (mouse)Not determined197053986131054190Mouse
13452398Leusq5_mleucocytosis susceptibility QTL 5 (mouse)198474785126386517Mouse
1301536Pbbcp1_mperipheral blood B cell percentage 1 (mouse)Not determined199507660133507845Mouse
1301193Lxw3_mlupus BXSB x NZW 3 (mouse)Not determined1102968534136968667Mouse
12879492Ecgnq1_meccrine gland number QTL 1 (mouse)1103278062120535225Mouse
10412162Nobq3_mNew Zealand obese QTL 3 (mouse)Not determined1103933405191225397Mouse
12790994Aaaq1_maortic arch angle QTL 1 (mouse)1109495943143495943Mouse
1301979Melm1_mmelanoma modifier 1 (mouse)Not determined1109638262143638479Mouse
1357600Obq17_mobesity QTL 17 (mouse)Not determined1110553179144553298Mouse
10401248Bglu12_mblood glucose level 12 (mouse)Not determined1110553179144553298Mouse
1301149Lrnx12_mlearning-contextual 12 (mouse)Not determined1112008822168186402Mouse
1302098Eila1_methanol induced locomotor activity 1 (mouse)Not determined1112008822175468938Mouse
1301249Sbw1_msplenomegaly-NZB x NZW 1 (mouse)Not determined1112131005146131085Mouse
10045640Jckm4_mjuvenile cystic kidney modifier 4 (mouse)Not determined1116290836150290937Mouse
27095915Scvln13_msacral vertebrae length 2, 16 week (mouse)1117527730179827565Mouse
1302161Exq2_mexploratory and excitability QTL 2 (mouse)Not determined1118099720152099816Mouse

Markers in Region
M-09981  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381118,655,712 - 118,655,826UniSTSGRCm38
MGSCv371120,552,289 - 120,552,403UniSTSGRCm37
Celera1121,318,107 - 121,318,205UniSTS
Cytogenetic Map1E2UniSTS
Whitehead/MRC_RH11609.93UniSTS
RH124523  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381118,680,510 - 118,680,783UniSTSGRCm38
MGSCv371120,577,087 - 120,577,360UniSTSGRCm37
Celera1121,342,847 - 121,343,120UniSTS
Cytogenetic Map1E2UniSTS
UniSTS:234191  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381118,682,690 - 118,682,891UniSTSGRCm38
MGSCv371120,579,267 - 120,579,468UniSTSGRCm37
Celera1121,345,023 - 121,345,224UniSTS
Cytogenetic Map1E2UniSTS
UniSTS:234192  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381118,683,797 - 118,684,120UniSTSGRCm38
MGSCv371120,580,374 - 120,580,697UniSTSGRCm37
Celera1121,346,131 - 121,346,454UniSTS
Cytogenetic Map1E2UniSTS
PMC304100P4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381118,684,839 - 118,685,129UniSTSGRCm38
MGSCv371120,581,416 - 120,581,706UniSTSGRCm37
Celera1121,347,167 - 121,347,457UniSTS
Cytogenetic Map1E2UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000027629   ⟹   ENSMUSP00000027629
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1118,555,676 - 118,612,898 (+)Ensembl
GRCm38.p6 Ensembl1118,627,946 - 118,685,168 (+)Ensembl
RefSeq Acc Id: ENSMUST00000190652
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1118,555,675 - 118,565,496 (+)Ensembl
GRCm38.p6 Ensembl1118,627,945 - 118,637,766 (+)Ensembl
RefSeq Acc Id: NM_023755   ⟹   NP_076244
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391118,555,675 - 118,612,898 (+)NCBI
GRCm381118,627,945 - 118,685,168 (+)NCBI
MGSCv371120,524,522 - 120,581,745 (+)RGD
Celera1121,290,045 - 121,347,496 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006529961   ⟹   XP_006530024
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391118,555,646 - 118,612,898 (+)NCBI
GRCm381118,627,923 - 118,685,168 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_076244   ⟸   NM_023755
- UniProtKB: Q99PF2 (UniProtKB/Swiss-Prot),   Q3UNW5 (UniProtKB/Swiss-Prot),   A0A8C6GQS5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006530024   ⟸   XM_006529961
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000027629   ⟸   ENSMUST00000027629
Protein Domains
Grh/CP2 DB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3UNW5-F1-model_v2 AlphaFold Q3UNW5 1-479 view protein structure

Promoters
RGD ID:6874700
Promoter ID:EPDNEW_M801
Type:multiple initiation site
Name:Tfcp2l1_1
Description:Mus musculus transcription factor CP2-like 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381118,627,947 - 118,628,007EPDNEW
RGD ID:6818619
Promoter ID:MM_KWN:1871
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell,   Kidney,   Liver,   Lung
Transcripts:NM_023755,   UC007CIK.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361120,524,281 - 120,524,781 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2444691 AgrOrtholog
Ensembl Genes ENSMUSG00000026380 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000027629 ENTREZGENE
  ENSMUSP00000027629.9 UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000027629 ENTREZGENE
  ENSMUST00000027629.10 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.150.50 UniProtKB/Swiss-Prot
InterPro CP2 UniProtKB/Swiss-Prot
  SAM/pointed_sf UniProtKB/Swiss-Prot
  SAM_3 UniProtKB/Swiss-Prot
  TF_CP2-like UniProtKB/Swiss-Prot
  TFCP2L1_SAM UniProtKB/Swiss-Prot
KEGG Report mmu:81879 UniProtKB/Swiss-Prot
MGD MGI:2444691 ENTREZGENE
NCBI Gene 81879 ENTREZGENE
PANTHER TRANSCRIPTION FACTOR CP2 UniProtKB/Swiss-Prot
  TRANSCRIPTION FACTOR CP2-LIKE PROTEIN 1 UniProtKB/Swiss-Prot
Pfam CP2 UniProtKB/Swiss-Prot
  SAM_3 UniProtKB/Swiss-Prot
PhenoGen Tfcp2l1 PhenoGen
PROSITE GRH_CP2_DB UniProtKB/Swiss-Prot
Superfamily-SCOP SSF47769 UniProtKB/Swiss-Prot
UniProt A0A8C6GQS5 ENTREZGENE
  Q3UNW5 ENTREZGENE
  Q99PF2 ENTREZGENE
  TF2L1_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q14AW3 UniProtKB/Swiss-Prot
  Q99PF2 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-10-25 Tfcp2l1  transcription factor CP2-like 1  Tcfcp2l1  transcription factor CP2-like 1  Symbol and/or name change 5135510 APPROVED