Zeb1 (zinc finger E-box binding homeobox 1) - Rat Genome Database

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Gene: Zeb1 (zinc finger E-box binding homeobox 1) Mus musculus
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Symbol: Zeb1
Name: zinc finger E-box binding homeobox 1
RGD ID: 1552190
MGI Page MGI
Description: Enables DNA-binding transcription repressor activity, RNA polymerase II-specific; E-box binding activity; and chromatin binding activity. Involved in negative regulation of DNA-templated transcription and positive regulation of neuron differentiation. Acts upstream of or within several processes, including embryonic organ morphogenesis; negative regulation of keratinocyte proliferation; and regulation of transcription by RNA polymerase II. Located in nucleus. Is expressed in several structures, including alimentary system; central nervous system; embryo mesenchyme; embryo mesoderm; and genitourinary system. Used to study tropical spastic paraparesis. Human ortholog(s) of this gene implicated in Fuchs' endothelial dystrophy and posterior polymorphous corneal dystrophy 3. Orthologous to human ZEB1 (zinc finger E-box binding homeobox 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 3110032K11Rik; [delta]E; [delta]EF1; ARE; AREB6; BZP; delta EF1; MEB1; N; Nil2; TCF-8; Tcf18; Tcf8; transcription factor 8; Tw; twirler; ZEB; Zfhe; Zfhep; Zfhx1; Zfhx1a; Zfx1; Zfx1a; Zfx1ha; zinc finger E-box-binding homeobox 1; zinc finger homeobox 1a; zinc finger homeobox protein 1a
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39185,591,330 - 5,775,468 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl185,591,860 - 5,775,467 (+)EnsemblGRCm39 Ensembl
GRCm38185,591,327 - 5,775,468 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl185,591,860 - 5,775,467 (+)EnsemblGRCm38mm10GRCm38
MGSCv37185,591,889 - 5,774,909 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36185,591,889 - 5,774,909 (+)NCBIMGSCv36mm8
Celera185,749,281 - 5,819,757 (+)NCBICelera
Cytogenetic Map18A1NCBI
cM Map184.42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-nicotine  (ISO)
1,2-dimethylhydrazine  (EXP)
1-nitropyrene  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP,ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-acetamidofluorene  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
3-Nitrobenzanthrone  (ISO)
5-aza-2'-deoxycytidine  (ISO)
acrolein  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (EXP)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
ammonium chloride  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (EXP,ISO)
arsenic atom  (EXP,ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
Butylbenzyl phthalate  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbon nanotube  (EXP)
chlormequat chloride  (ISO)
chlorpyrifos  (EXP)
cholesterol  (ISO)
choline  (EXP)
chromium(6+)  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
crocidolite asbestos  (EXP)
cycloastragenol  (ISO)
cyclosporin A  (ISO)
deoxynivalenol  (EXP)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
diclofenac  (ISO)
dicrotophos  (ISO)
diethylstilbestrol  (EXP)
dimethyl sulfoxide  (ISO)
dioxygen  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
embelin  (ISO)
entinostat  (ISO)
ethanol  (EXP)
folic acid  (EXP)
formaldehyde  (ISO)
galaxolide  (ISO)
genistein  (EXP,ISO)
gentamycin  (ISO)
indometacin  (ISO)
inulin  (EXP)
ionomycin  (EXP)
L-methionine  (EXP)
leflunomide  (ISO)
menadione  (ISO)
mercury dichloride  (ISO)
methotrexate  (EXP)
methylmercury chloride  (ISO)
MK-2206  (EXP)
monensin A  (ISO)
N-methyl-N-nitrosourea  (ISO)
nickel sulfate  (ISO)
nicotine  (ISO)
oxaliplatin  (ISO)
ozone  (EXP,ISO)
paclitaxel  (ISO)
palbociclib  (ISO)
panobinostat  (ISO)
paracetamol  (ISO)
PCB138  (EXP)
PD 0325901  (ISO)
perfluorodecanoic acid  (EXP)
perfluorononanoic acid  (EXP)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
perfluorooctanoic acid  (EXP)
phenobarbital  (EXP,ISO)
phenylmercury acetate  (ISO)
phorbol 13-acetate 12-myristate  (EXP,ISO)
potassium chromate  (ISO)
progesterone  (ISO)
propiconazole  (EXP)
raloxifene  (ISO)
Rebamipide  (ISO)
resveratrol  (ISO)
sarin  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
serpentine asbestos  (ISO)
silicon dioxide  (EXP,ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (EXP)
sodium arsenite  (ISO)
sorafenib  (EXP)
sulforaphane  (ISO)
testosterone enanthate  (ISO)
thalidomide  (ISO)
titanium dioxide  (EXP,ISO)
topotecan  (ISO)
Tributyltin oxide  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
triptonide  (EXP)
tungsten  (EXP)
valproic acid  (ISO)
vitamin E  (ISO)
warfarin  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
anatomical structure development  (IBA)
animal organ development  (IMP)
cartilage development  (IMP)
cell differentiation  (IEA)
cell population proliferation  (IMP)
cellular response to amino acid stimulus  (IDA)
cellular response to transforming growth factor beta stimulus  (ISO)
central nervous system development  (IGI)
cochlea morphogenesis  (IMP)
embryonic camera-type eye morphogenesis  (IMP)
embryonic morphogenesis  (IGI)
embryonic skeletal system morphogenesis  (IMP)
epithelial cell proliferation  (IMP)
forebrain development  (ISO)
keratinocyte proliferation  (IMP)
negative regulation of DNA-templated transcription  (IDA,ISO)
negative regulation of endothelial cell differentiation  (ISO)
negative regulation of epithelial cell differentiation  (IMP)
negative regulation of epithelial cell proliferation  (IMP)
negative regulation of keratinocyte proliferation  (IMP)
negative regulation of transcription by RNA polymerase II  (IMP,ISO)
nervous system development  (IEA)
pattern specification process  (IMP)
positive regulation of neuron differentiation  (IDA)
positive regulation of transcription by RNA polymerase II  (IDA,IGI,ISO)
regulation of mesenchymal cell proliferation  (IMP)
regulation of smooth muscle cell differentiation  (IMP)
regulation of T cell differentiation in thymus  (IMP)
regulation of transcription by RNA polymerase II  (IBA)
regulation of transforming growth factor beta receptor signaling pathway  (IGI)
response to activity  (ISO)
response to nutrient levels  (ISO)
semicircular canal morphogenesis  (IMP)

Cellular Component
cytosol  (ISO)
nucleoplasm  (ISO)
nucleus  (IDA,ISO)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal abdominal fat pad morphology  (IAGP)
abnormal B cell differentiation  (IAGP)
abnormal basisphenoid bone morphology  (IAGP)
abnormal brain ventricle morphology  (IAGP)
abnormal circulating hormone level  (IAGP)
abnormal circulating lipid level  (IAGP)
abnormal class switch recombination  (IAGP)
abnormal cochlea morphology  (IAGP)
abnormal cornea morphology  (IAGP)
abnormal corneal endothelium morphology  (IAGP)
abnormal corneal stroma morphology  (IAGP)
abnormal cranial blood vasculature morphology  (IAGP)
abnormal craniofacial bone morphology  (IAGP)
abnormal cribriform plate morphology  (IAGP)
abnormal crista ampullaris morphology  (IAGP)
abnormal crista ampullaris neuroepithelium morphology  (IAGP)
abnormal eating behavior  (IAGP)
abnormal elbow joint morphology  (IAGP)
abnormal ethmoid bone morphology  (IAGP)
abnormal hindlimb morphology  (IAGP)
abnormal hip joint morphology  (IAGP)
abnormal inguinal fat pad morphology  (IAGP)
abnormal inner ear canal morphology  (IAGP)
abnormal inner ear morphology  (IAGP)
abnormal iridocorneal angle  (IAGP)
abnormal jaw morphology  (IAGP)
abnormal lateral semicircular canal morphology  (IAGP)
abnormal mandibular angle morphology  (IAGP)
abnormal maxillary shelf morphology  (IAGP)
abnormal memory B cell physiology  (IAGP)
abnormal nasal cavity morphology  (IAGP)
abnormal nasal septum morphology  (IAGP)
abnormal navicular morphology  (IAGP)
abnormal neural plate morphology  (IAGP)
abnormal neural tube morphology  (IAGP)
abnormal olfactory bulb glomerular layer morphology  (IAGP)
abnormal olfactory bulb layer morphology  (IAGP)
abnormal olfactory bulb mitral cell layer morphology  (IAGP)
abnormal olfactory bulb morphology  (IAGP)
abnormal olfactory epithelium morphology  (IAGP)
abnormal olfactory nerve morphology  (IAGP)
abnormal olfactory sensory neuron morphology  (IAGP)
abnormal otolith morphology  (IAGP)
abnormal palatal shelf morphology  (IAGP)
abnormal parental behavior  (IAGP)
abnormal phalanx morphology  (IAGP)
abnormal posterior semicircular canal morphology  (IAGP)
abnormal postural reflex  (IAGP)
abnormal premaxilla morphology  (IAGP)
abnormal pterygoid bone morphology  (IAGP)
abnormal rib morphology  (IAGP)
abnormal scala media morphology  (IAGP)
abnormal semicircular canal ampulla morphology  (IAGP)
abnormal semicircular canal morphology  (IAGP)
abnormal sensory neuron innervation pattern  (IAGP)
abnormal serous gland morphology  (IAGP)
abnormal somite development  (IAGP)
abnormal sternebra morphology  (IAGP)
abnormal sternum morphology  (IAGP)
abnormal suckling behavior  (IAGP)
abnormal superior semicircular canal morphology  (IAGP)
abnormal T cell differentiation  (IAGP)
abnormal T cell subpopulation ratio  (IAGP)
abnormal tarsal bone morphology  (IAGP)
abnormal thymus development  (IAGP)
abnormal turbinate morphology  (IAGP)
abnormal vascular smooth muscle physiology  (IAGP)
abnormal vascular wound healing  (IAGP)
abnormal xiphoid process morphology  (IAGP)
absent lateral semicircular canal  (IAGP)
absent marginal zone B cells  (IAGP)
absent otoliths  (IAGP)
anterior iris synechia  (IAGP)
ascites  (IAGP)
bidirectional circling  (IAGP)
bilateral cleft palate  (IAGP)
bilateral cleft upper lip  (IAGP)
bowed radius  (IAGP)
bowed tibia  (IAGP)
brachyphalangia  (IAGP)
circling  (IAGP)
cleft palate  (IAGP)
cleft secondary palate  (IAGP)
cleft upper lip  (IAGP)
corneal abrasion  (IAGP)
corneal epithelium hypoplasia  (IAGP)
curly tail  (IAGP)
cyanosis  (IAGP)
cyclopia  (IAGP)
decreased B cell proliferation  (IAGP)
decreased B-1 B cell number  (IAGP)
decreased B-1a cell number  (IAGP)
decreased B-1b cell number  (IAGP)
decreased body size  (IAGP)
decreased CD8-positive, alpha-beta T cell number  (IAGP)
decreased cochlear coiling  (IAGP)
decreased double-positive T cell number  (IAGP)
decreased germinal center B cell number  (IAGP)
decreased IgG level  (IAGP)
decreased IgG1 level  (IAGP)
decreased IgM level  (IAGP)
decreased lateral semicircular canal size  (IAGP)
decreased length of long bones  (IAGP)
decreased leukocyte cell number  (IAGP)
decreased locomotor activity  (IAGP)
decreased lymphocyte cell number  (IAGP)
decreased neutrophil cell number  (IAGP)
decreased NK cell number  (IAGP)
decreased otolith number  (IAGP)
decreased oxygen consumption  (IAGP)
decreased palatal shelf size  (IAGP)
decreased posterior semicircular canal size  (IAGP)
decreased somite size  (IAGP)
decreased splenocyte number  (IAGP)
decreased T cell number  (IAGP)
decreased thymocyte number  (IAGP)
delayed endochondral bone ossification  (IAGP)
dilated endolymphatic duct  (IAGP)
diluted coat color  (IAGP)
distended abdomen  (IAGP)
edema  (IAGP)
embryonic growth arrest  (IAGP)
embryonic lethality between somite formation and embryo turning, complete penetrance  (IAGP)
embryonic lethality during organogenesis  (IAGP)
enlarged otoliths  (IAGP)
exencephaly  (IAGP)
failure of initiation of embryo turning  (IAGP)
female infertility  (IAGP)
fetal growth retardation  (IAGP)
fused carpal bones  (IAGP)
fused metatarsal bones  (IAGP)
head bobbing  (IAGP)
head shaking  (IAGP)
hemorrhage  (IAGP)
hydrops fetalis  (IAGP)
hyperactivity  (IAGP)
impaired glucose tolerance  (IAGP)
impaired humoral immune response  (IEA)
increased aggression towards male mice  (IAGP)
increased body weight  (IAGP)
increased circulating adiponectin level  (IAGP)
increased circulating corticosterone level  (IAGP)
increased circulating free fatty acids level  (IAGP)
increased circulating insulin level  (IAGP)
increased circulating leptin level  (IAGP)
increased circulating triglyceride level  (IAGP)
increased food intake  (IAGP)
increased or absent threshold for auditory brainstem response  (IAGP)
increased percent body fat/body weight  (IAGP)
increased single-positive T cell number  (IAGP)
increased susceptibility to age related obesity  (IAGP)
increased T cell derived lymphoma incidence  (IAGP)
increased thymocyte number  (IAGP)
increased total body fat amount  (IAGP)
infertility  (IAGP)
insulin resistance  (IAGP)
intervertebral disk hypoplasia  (IAGP)
lymph node hypoplasia  (IAGP)
mandible hypoplasia  (IAGP)
mandibular condyloid process hypoplasia  (IAGP)
mandibular coronoid process hypoplasia  (IAGP)
Meckel's cartilage hyperplasia  (IAGP)
median cleft palate  (IAGP)
meteorism  (IAGP)
midline facial cleft  (IAGP)
neonatal lethality, complete penetrance  (IAGP)
obese  (IAGP)
open neural tube  (IAGP)
palatal shelves fail to meet at midline  (IAGP)
palate bone hypoplasia  (IAGP)
patellar dislocation  (IAGP)
perinatal lethality, complete penetrance  (IAGP)
postnatal growth retardation  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
premature death  (IAGP)
reduced male fertility  (IAGP)
respiratory distress  (IAGP)
respiratory failure  (IAGP)
rib fusion  (IAGP)
short limbs  (IAGP)
short mandible  (IAGP)
short maxilla  (IAGP)
short premaxilla  (IAGP)
short scapula  (IAGP)
short sternum  (IAGP)
small spleen  (IAGP)
small thymus  (IAGP)
sparse hair  (IAGP)
syndactyly  (IAGP)
thymus hypoplasia  (IAGP)
transmission ratio distortion  (IAGP)
turbinate hypoplasia  (IAGP)
unilateral cleft palate  (IAGP)
unilateral cleft upper lip  (IAGP)
vagina atresia  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. Application quantitative proteomics approach to identify differentially expressed proteins associated with cardiac protection mediated by cycloastragenol in acute myocardial infarction rats. Ren YS, etal., J Proteomics. 2020 Jun 30;222:103691. doi: 10.1016/j.jprot.2020.103691. Epub 2020 Feb 14.
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Activation of activin/Smad2 and 3 signaling pathway and the potential involvement of endothelial‑mesenchymal transition in the valvular damage due to rheumatic heart disease. Xian S, etal., Mol Med Rep. 2021 Jan;23(1):10. doi: 10.3892/mmr.2020.11648. Epub 2020 Nov 12.
Additional References at PubMed
PMID:1427828   PMID:2414073   PMID:2997987   PMID:4086792   PMID:6949984   PMID:7511123   PMID:7935395   PMID:8176201   PMID:8211130   PMID:8647466   PMID:8662222   PMID:8964504  
PMID:9126927   PMID:9367688   PMID:9389660   PMID:10349636   PMID:10567582   PMID:10669096   PMID:10922068   PMID:10969736   PMID:11042159   PMID:11076861   PMID:11681996   PMID:11776395  
PMID:12477932   PMID:12520002   PMID:12606286   PMID:12609600   PMID:12714599   PMID:13539273   PMID:14643678   PMID:15226419   PMID:15582152   PMID:15674322   PMID:16007124   PMID:16129691  
PMID:16141072   PMID:16141073   PMID:16426902   PMID:16493026   PMID:16598713   PMID:16602821   PMID:16824956   PMID:16957952   PMID:17360662   PMID:17392792   PMID:17615296   PMID:17655524  
PMID:18192284   PMID:18287559   PMID:18346943   PMID:18411277   PMID:18436818   PMID:18467597   PMID:18470539   PMID:18799693   PMID:18829540   PMID:19181930   PMID:19194497   PMID:19208835  
PMID:19515996   PMID:19785035   PMID:19935649   PMID:19948490   PMID:20006705   PMID:20025777   PMID:20041147   PMID:20207963   PMID:20346398   PMID:20412781   PMID:20548288   PMID:20549719  
PMID:21079000   PMID:21224848   PMID:21224849   PMID:21267068   PMID:21317430   PMID:21677750   PMID:21747944   PMID:21873635   PMID:21980308   PMID:21980309   PMID:22037216   PMID:22261924  
PMID:22350174   PMID:22761313   PMID:23039190   PMID:23312518   PMID:23339872   PMID:23340304   PMID:23443660   PMID:23554223   PMID:23765281   PMID:24161570   PMID:24371144   PMID:24433583  
PMID:24627491   PMID:24631216   PMID:24735878   PMID:24762440   PMID:24769727   PMID:24952961   PMID:25082886   PMID:25104574   PMID:25163748   PMID:25344754   PMID:25348003   PMID:25434817  
PMID:25643708   PMID:25864110   PMID:25896208   PMID:25942625   PMID:26212757   PMID:26324903   PMID:26559025   PMID:26598619   PMID:26639759   PMID:26812015   PMID:26934489   PMID:27135215  
PMID:27178982   PMID:27215389   PMID:27509493   PMID:27530323   PMID:27806288   PMID:27965283   PMID:28126904   PMID:28176446   PMID:28407375   PMID:28414315   PMID:28500132   PMID:28671696  
PMID:28781078   PMID:29031500   PMID:29038174   PMID:29079737   PMID:29200203   PMID:29324442   PMID:29449309   PMID:29475039   PMID:29490942   PMID:29590624   PMID:29599503   PMID:29778661  
PMID:29930325   PMID:30144413   PMID:30262992   PMID:30271956   PMID:30304480   PMID:30405106   PMID:30413481   PMID:30483264   PMID:30858607   PMID:30910999   PMID:30980466   PMID:31073041  
PMID:31116980   PMID:31171776   PMID:31220272   PMID:31323030   PMID:31324807   PMID:31401394   PMID:31439646   PMID:31962101   PMID:31974363   PMID:32005677   PMID:32024836   PMID:32039918  
PMID:32325033   PMID:32546759   PMID:33046710   PMID:33108352   PMID:33158935   PMID:33218341   PMID:33318148   PMID:33419386   PMID:33421513   PMID:33839408   PMID:33852841   PMID:33997926  
PMID:34020945   PMID:34115982   PMID:34116231   PMID:34193422   PMID:34433042   PMID:34550965   PMID:34709266   PMID:34747544   PMID:35021086   PMID:35138000   PMID:35236825   PMID:35246504  
PMID:35271943   PMID:35340433   PMID:35486848   PMID:35570385   PMID:36008379   PMID:36162459   PMID:36166408   PMID:36418889   PMID:36862248  


Genomics

Comparative Map Data
Zeb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39185,591,330 - 5,775,468 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl185,591,860 - 5,775,467 (+)EnsemblGRCm39 Ensembl
GRCm38185,591,327 - 5,775,468 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl185,591,860 - 5,775,467 (+)EnsemblGRCm38mm10GRCm38
MGSCv37185,591,889 - 5,774,909 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36185,591,889 - 5,774,909 (+)NCBIMGSCv36mm8
Celera185,749,281 - 5,819,757 (+)NCBICelera
Cytogenetic Map18A1NCBI
cM Map184.42NCBI
ZEB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381031,318,417 - 31,529,804 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1031,318,495 - 31,529,814 (+)EnsemblGRCh38hg38GRCh38
GRCh371031,607,346 - 31,818,732 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361031,648,148 - 31,856,742 (+)NCBINCBI36Build 36hg18NCBI36
Build 341031,648,147 - 31,856,740NCBI
Celera1031,373,372 - 31,583,958 (+)NCBICelera
Cytogenetic Map10p11.22NCBI
HuRef1031,330,231 - 31,538,974 (+)NCBIHuRef
CHM1_11031,608,067 - 31,818,701 (+)NCBICHM1_1
T2T-CHM13v2.01031,348,155 - 31,559,554 (+)NCBIT2T-CHM13v2.0
Zeb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21751,948,948 - 52,116,018 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1751,948,948 - 52,115,214 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1755,134,749 - 55,300,937 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01759,137,668 - 59,303,854 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01753,287,135 - 53,453,509 (-)NCBIRnor_WKY
Rnor_6.01754,656,627 - 54,714,920 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1754,658,463 - 54,714,914 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01752,353,064 - 52,373,420 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41760,177,150 - 60,198,584 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11760,187,896 - 60,245,300 (-)NCBI
Celera1747,960,914 - 48,019,394 (-)NCBICelera
Cytogenetic Map17q12.1NCBI
Zeb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542923,010,790 - 23,198,250 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542923,011,627 - 23,198,188 (+)NCBIChiLan1.0ChiLan1.0
ZEB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan11043,974,837 - 44,184,975 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01031,449,202 - 31,659,534 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11032,043,863 - 32,253,550 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1032,046,491 - 32,253,550 (+)Ensemblpanpan1.1panPan2
ZEB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1215,300,401 - 15,481,535 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl215,299,723 - 15,481,495 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha212,788,320 - 12,969,363 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0213,536,487 - 13,717,784 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl213,501,815 - 13,717,743 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1212,976,357 - 13,157,263 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0212,866,906 - 13,048,214 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0213,140,991 - 13,322,104 (-)NCBIUU_Cfam_GSD_1.0
Zeb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934410,517,823 - 10,676,265 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493657417,684 - 178,293 (+)EnsemblSpeTri2.0
SpeTri2.0NW_00493657417,643 - 175,762 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZEB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1042,013,084 - 42,214,205 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11042,013,114 - 42,216,139 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21046,547,219 - 46,726,896 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZEB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1930,674,893 - 30,862,682 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl930,674,578 - 30,863,250 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605639,637,685 - 39,830,491 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zeb1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248053,964,450 - 4,042,527 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248053,964,448 - 4,044,546 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Zeb1
4829 total Variants
miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Mir200bmmu-miR-200b-3pMirtarbaseexternal_infoqRT-PCR//Luciferase reporter assayFunctional MTI19787069
Mir200bmmu-miR-200b-3pMirtarbaseexternal_infoReporter assayFunctional MTI21049046
Mir200bmmu-miR-200b-3pMirtarbaseexternal_infoReporter assayFunctional MTI18411277
Mir200bmmu-miR-200b-3pTarbaseexternal_infoReporter GenePOSITIVE
Mir200bmmu-miR-200b-3pOncomiRDBexternal_infoNANA23436804
Mir200bmmu-miR-200b-3pOncomiRDBexternal_infoNANA22020340
Mir200bmmu-miR-200b-3pOncomiRDBexternal_infoNANA19854497
Mir200bmmu-miR-200b-3pOncomiRDBexternal_infoNANA19839049
Mir200bmmu-miR-200b-3pOncomiRDBexternal_infoNANA18381893
Mir200bmmu-miR-200b-3pOncomiRDBexternal_infoNANA18376396
Mir150mmu-miR-150-5pOncomiRDBexternal_infoNANA23013135
Mir200ammu-miR-200a-3pMirtarbaseexternal_infoReporter assayFunctional MTI21049046
Mir200ammu-miR-200a-3pMirtarbaseexternal_infoReporter assayNon-Functional MTI18411277
Mir200ammu-miR-200a-3pTarbaseexternal_infoReporter GeneNEGATIVE
Mir200ammu-miR-200a-3pOncomiRDBexternal_infoNANA23436804
Mir200ammu-miR-200a-3pOncomiRDBexternal_infoNANA22020340
Mir200ammu-miR-200a-3pOncomiRDBexternal_infoNANA19854497
Mir200ammu-miR-200a-3pOncomiRDBexternal_infoNANA19839049
Mir200ammu-miR-200a-3pOncomiRDBexternal_infoNANA18381893
Mir200ammu-miR-200a-3pOncomiRDBexternal_infoNANA18376396
Mir200cmmu-miR-200c-3pOncomiRDBexternal_infoNANA19839049
Mir200cmmu-miR-200c-3pOncomiRDBexternal_infoNANA18381893
Mir141mmu-miR-141-3pMirtarbaseexternal_infoReporter assayFunctional MTI18411277
Mir141mmu-miR-141-3pTarbaseexternal_infoReporter GenePOSITIVE
Mir205mmu-miR-205-5pOncomiRDBexternal_infoNANA22949650
Mir205mmu-miR-205-5pOncomiRDBexternal_infoNANA18376396
Mir200cmmu-miR-200c-3pMirtarbaseexternal_infoqRT-PCR//Luciferase reporter assayFunctional MTI19787069
Mir200cmmu-miR-200c-3pMirtarbaseexternal_infoReporter assayFunctional MTI21049046
Mir200cmmu-miR-200c-3pOncomiRDBexternal_infoNANA23436804
Mir200cmmu-miR-200c-3pOncomiRDBexternal_infoNANA22685266
Mir200cmmu-miR-200c-3pOncomiRDBexternal_infoNANA22569286
Mir200cmmu-miR-200c-3pOncomiRDBexternal_infoNANA22407310
Mir200cmmu-miR-200c-3pOncomiRDBexternal_infoNANA19854497
Mir429mmu-miR-429-3pMirtarbaseexternal_infoLuciferase reporter assay//Western blotFunctional MTI19745813
Mir429mmu-miR-429-3pMirtarbaseexternal_infoReporter assayFunctional MTI21049046
Mir429mmu-miR-429-3pTarbaseexternal_infoReporter GeneNEGATIVE
Mir192mmu-miR-192-5pOncomiRDBexternal_infoNANA18805502
Mir429mmu-miR-429-3pMirtarbaseexternal_infoReporter assayNon-Functional MTI18411277
Mir200cmmu-miR-200c-3pOncomiRDBexternal_infoNANA18376396

Predicted Target Of
Summary Value
Count of predictions:3657
Count of miRNA genes:934
Interacting mature miRNAs:1360
Transcripts:ENSMUST00000025081, ENSMUST00000159390, ENSMUST00000159477, ENSMUST00000160522, ENSMUST00000160910, ENSMUST00000161295, ENSMUST00000162892, ENSMUST00000175739, ENSMUST00000175925, ENSMUST00000177030, ENSMUST00000177070
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142127Rafaril_mRafar interacting locus (mouse)Not determined18123108555Mouse
14928307Manh83_mmandible shape 83 (mouse)18126902168Mouse
11354953Mom21_mmodifier of Min 21 (mouse)18128893823Mouse
12801462Intim3_mintima modifier 3 (mouse)18131720756Mouse
12801458Intmrm3_mintima/media ratio modifier 3 (mouse)18131720756Mouse
13207585Mwmlpt3_mMorris water maze latency to platform, training, 3 (mouse)18133547739Mouse
13207589Mwmlpa3_mMorris water maze latency to platform, all, 3 (mouse)18133547739Mouse
27226723Tibw9_mtibia width 9, proximal, 16 week (mouse)18320000060933072Mouse
1558849W3q15_mweight 3 weeks QTL 15 (mouse)Not determined18504111961272643Mouse

Markers in Region
U26259  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38185,774,007 - 5,774,161UniSTSGRCm38
MGSCv37185,774,005 - 5,774,159UniSTSGRCm37
Celera185,818,853 - 5,819,007UniSTS
Cytogenetic Map18A1UniSTS
cM Map184.42UniSTS
cM Map180.0UniSTS
Whitehead_YAC18 UniSTS
UniSTS:237733  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38185,711,432 - 5,711,631UniSTSGRCm38
MGSCv37185,711,430 - 5,711,629UniSTSGRCm37
Celera185,755,671 - 5,755,870UniSTS
Cytogenetic Map18A1UniSTS
cM Map184.42UniSTS
cM Map180.0UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001360981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001360982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_011546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006525769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC127028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC138619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK014114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK034821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK041408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK083050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK140038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK141437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC090987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC139768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC139769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE852657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D76432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L48363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U26259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000025081   ⟹   ENSMUSP00000025081
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl185,591,864 - 5,775,467 (+)Ensembl
GRCm38.p6 Ensembl185,591,864 - 5,775,467 (+)Ensembl
RefSeq Acc Id: ENSMUST00000159390   ⟹   ENSMUSP00000124395
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl185,591,891 - 5,766,533 (+)Ensembl
GRCm38.p6 Ensembl185,591,891 - 5,766,533 (+)Ensembl
RefSeq Acc Id: ENSMUST00000159477
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl185,603,744 - 5,642,873 (+)Ensembl
GRCm38.p6 Ensembl185,603,744 - 5,642,873 (+)Ensembl
RefSeq Acc Id: ENSMUST00000160522
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl185,591,872 - 5,706,884 (+)Ensembl
GRCm38.p6 Ensembl185,591,872 - 5,706,884 (+)Ensembl
RefSeq Acc Id: ENSMUST00000160910   ⟹   ENSMUSP00000124815
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl185,593,602 - 5,759,057 (+)Ensembl
GRCm38.p6 Ensembl185,593,602 - 5,759,057 (+)Ensembl
RefSeq Acc Id: ENSMUST00000161295   ⟹   ENSMUSP00000124507
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl185,591,912 - 5,766,570 (+)Ensembl
GRCm38.p6 Ensembl185,591,912 - 5,766,570 (+)Ensembl
RefSeq Acc Id: ENSMUST00000162892
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl185,594,203 - 5,767,742 (+)Ensembl
GRCm38.p6 Ensembl185,594,203 - 5,767,742 (+)Ensembl
RefSeq Acc Id: ENSMUST00000175739
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl185,593,308 - 5,641,459 (+)Ensembl
GRCm38.p6 Ensembl185,593,308 - 5,641,459 (+)Ensembl
RefSeq Acc Id: ENSMUST00000175925   ⟹   ENSMUSP00000135125
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl185,591,891 - 5,766,916 (+)Ensembl
GRCm38.p6 Ensembl185,591,891 - 5,766,916 (+)Ensembl
RefSeq Acc Id: ENSMUST00000177030
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl185,731,081 - 5,772,804 (+)Ensembl
GRCm38.p6 Ensembl185,731,081 - 5,772,804 (+)Ensembl
RefSeq Acc Id: ENSMUST00000177070
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl185,593,861 - 5,759,184 (+)Ensembl
GRCm38.p6 Ensembl185,593,861 - 5,759,184 (+)Ensembl
RefSeq Acc Id: ENSMUST00000224200   ⟹   ENSMUSP00000157056
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl185,591,860 - 5,641,385 (+)Ensembl
GRCm38.p6 Ensembl185,591,860 - 5,641,385 (+)Ensembl
RefSeq Acc Id: NM_001360981   ⟹   NP_001347910
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39185,592,647 - 5,775,468 (+)NCBI
GRCm38185,592,647 - 5,775,468 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001360982   ⟹   NP_001347911
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39185,592,647 - 5,775,468 (+)NCBI
GRCm38185,592,647 - 5,775,468 (+)NCBI
Sequence:
RefSeq Acc Id: NM_011546   ⟹   NP_035676
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39185,591,860 - 5,775,468 (+)NCBI
GRCm38185,591,860 - 5,775,468 (+)ENTREZGENE
MGSCv37185,591,889 - 5,774,909 (+)RGD
Celera185,749,282 - 5,820,314 (+)ENTREZGENE
cM Map18 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006525769   ⟹   XP_006525832
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39185,592,867 - 5,774,911 (+)NCBI
GRCm38185,592,858 - 5,774,911 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030250399   ⟹   XP_030106259
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39185,594,271 - 5,774,911 (+)NCBI
GRCm38185,594,266 - 5,774,911 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030250400   ⟹   XP_030106260
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39185,592,532 - 5,774,911 (+)NCBI
GRCm38185,592,528 - 5,774,911 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030250401   ⟹   XP_030106261
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39185,591,885 - 5,774,911 (+)NCBI
GRCm38185,591,885 - 5,774,911 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030250402   ⟹   XP_030106262
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39185,593,933 - 5,774,911 (+)NCBI
GRCm38185,592,858 - 5,774,911 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030250404   ⟹   XP_030106264
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39185,593,933 - 5,774,911 (+)NCBI
GRCm38185,592,858 - 5,774,911 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030250405   ⟹   XP_030106265
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39185,592,532 - 5,774,911 (+)NCBI
GRCm38185,592,528 - 5,774,911 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030250406   ⟹   XP_030106266
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39185,592,532 - 5,774,911 (+)NCBI
GRCm38185,592,528 - 5,774,911 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030250407   ⟹   XP_030106267
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39185,592,867 - 5,774,911 (+)NCBI
GRCm38185,592,858 - 5,774,911 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030250409   ⟹   XP_030106269
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39185,591,860 - 5,774,911 (+)NCBI
GRCm38185,591,883 - 5,774,911 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030250410   ⟹   XP_030106270
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39185,591,330 - 5,774,911 (+)NCBI
GRCm38185,591,327 - 5,774,911 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030250411   ⟹   XP_030106271
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39185,591,867 - 5,774,911 (+)NCBI
GRCm38185,591,866 - 5,774,911 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036161059   ⟹   XP_036016952
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39185,592,867 - 5,774,911 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036161061   ⟹   XP_036016954
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39185,592,532 - 5,774,911 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036161062   ⟹   XP_036016955
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39185,592,867 - 5,774,911 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036161063   ⟹   XP_036016956
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39185,610,523 - 5,774,911 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036161064   ⟹   XP_036016957
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39185,610,523 - 5,774,911 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036161065   ⟹   XP_036016958
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39185,591,878 - 5,774,911 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036161066   ⟹   XP_036016959
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39185,594,794 - 5,774,911 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036161067   ⟹   XP_036016960
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39185,593,933 - 5,774,911 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036161068   ⟹   XP_036016961
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39185,593,933 - 5,774,911 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036161069   ⟹   XP_036016962
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39185,594,794 - 5,774,911 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036161070   ⟹   XP_036016963
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39185,696,147 - 5,774,911 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001347910 (Get FASTA)   NCBI Sequence Viewer  
  NP_001347911 (Get FASTA)   NCBI Sequence Viewer  
  NP_035676 (Get FASTA)   NCBI Sequence Viewer  
  XP_006525832 (Get FASTA)   NCBI Sequence Viewer  
  XP_030106259 (Get FASTA)   NCBI Sequence Viewer  
  XP_030106260 (Get FASTA)   NCBI Sequence Viewer  
  XP_030106261 (Get FASTA)   NCBI Sequence Viewer  
  XP_030106262 (Get FASTA)   NCBI Sequence Viewer  
  XP_030106264 (Get FASTA)   NCBI Sequence Viewer  
  XP_030106265 (Get FASTA)   NCBI Sequence Viewer  
  XP_030106266 (Get FASTA)   NCBI Sequence Viewer  
  XP_030106267 (Get FASTA)   NCBI Sequence Viewer  
  XP_030106269 (Get FASTA)   NCBI Sequence Viewer  
  XP_030106270 (Get FASTA)   NCBI Sequence Viewer  
  XP_030106271 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016952 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016954 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016955 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016956 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016957 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016958 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016959 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016960 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016961 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016962 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016963 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA67564 (Get FASTA)   NCBI Sequence Viewer  
  AAB08442 (Get FASTA)   NCBI Sequence Viewer  
  AAI39769 (Get FASTA)   NCBI Sequence Viewer  
  AAI39770 (Get FASTA)   NCBI Sequence Viewer  
  BAA11177 (Get FASTA)   NCBI Sequence Viewer  
  BAC37053 (Get FASTA)   NCBI Sequence Viewer  
  BAE24684 (Get FASTA)   NCBI Sequence Viewer  
  BAE43240 (Get FASTA)   NCBI Sequence Viewer  
  EDL23039 (Get FASTA)   NCBI Sequence Viewer  
  Q64318 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_035676   ⟸   NM_011546
- Peptide Label: isoform 1
- UniProtKB: Q62519 (UniProtKB/Swiss-Prot),   Q64318 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006525832   ⟸   XM_006525769
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_030106270   ⟸   XM_030250410
- Peptide Label: isoform X3
RefSeq Acc Id: XP_030106271   ⟸   XM_030250411
- Peptide Label: isoform X4
RefSeq Acc Id: XP_030106269   ⟸   XM_030250409
- Peptide Label: isoform X3
RefSeq Acc Id: XP_030106261   ⟸   XM_030250401
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030106265   ⟸   XM_030250405
- Peptide Label: isoform X3
RefSeq Acc Id: XP_030106260   ⟸   XM_030250400
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030106266   ⟸   XM_030250406
- Peptide Label: isoform X3
RefSeq Acc Id: NP_001347910   ⟸   NM_001360981
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001347911   ⟸   NM_001360982
- Peptide Label: isoform 3
RefSeq Acc Id: XP_030106264   ⟸   XM_030250404
- Peptide Label: isoform X3
RefSeq Acc Id: XP_030106262   ⟸   XM_030250402
- Peptide Label: isoform X2
RefSeq Acc Id: XP_030106267   ⟸   XM_030250407
- Peptide Label: isoform X3
RefSeq Acc Id: XP_030106259   ⟸   XM_030250399
- Peptide Label: isoform X1
RefSeq Acc Id: ENSMUSP00000124395   ⟸   ENSMUST00000159390
RefSeq Acc Id: ENSMUSP00000157056   ⟸   ENSMUST00000224200
RefSeq Acc Id: ENSMUSP00000124815   ⟸   ENSMUST00000160910
RefSeq Acc Id: ENSMUSP00000025081   ⟸   ENSMUST00000025081
RefSeq Acc Id: ENSMUSP00000135125   ⟸   ENSMUST00000175925
RefSeq Acc Id: ENSMUSP00000124507   ⟸   ENSMUST00000161295
RefSeq Acc Id: XP_036016958   ⟸   XM_036161065
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036016954   ⟸   XM_036161061
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036016955   ⟸   XM_036161062
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036016952   ⟸   XM_036161059
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036016961   ⟸   XM_036161068
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036016960   ⟸   XM_036161067
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036016959   ⟸   XM_036161066
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036016962   ⟸   XM_036161069
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036016956   ⟸   XM_036161063
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036016957   ⟸   XM_036161064
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036016963   ⟸   XM_036161070
- Peptide Label: isoform X3
Protein Domains
C2H2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q64318-F1-model_v2 AlphaFold Q64318 1-1117 view protein structure

Promoters
RGD ID:6829620
Promoter ID:MM_KWN:24506
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   3T3L1_Day3
Transcripts:OTTMUST00000076518,   OTTMUST00000076524,   OTTMUST00000076526,   OTTMUST00000076608
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36185,591,654 - 5,592,154 (+)MPROMDB
RGD ID:13677032
Promoter ID:EPDNEW_M22665
Type:multiple initiation site
Name:Zeb1_1
Description:Mus musculus zinc finger E-box binding homeobox 1 , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M22668  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38185,591,891 - 5,591,951EPDNEW
RGD ID:6829621
Promoter ID:MM_KWN:24507
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000076521,   OTTMUST00000076523,   UC008DYZ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36185,592,726 - 5,594,067 (+)MPROMDB
RGD ID:6829622
Promoter ID:MM_KWN:24508
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   Liver,   Lung
Transcripts:OTTMUST00000076522
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36185,603,456 - 5,604,022 (+)MPROMDB
RGD ID:13677036
Promoter ID:EPDNEW_M22667
Type:initiation region
Name:AK041408_1
Description:n/a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38185,603,770 - 5,603,830EPDNEW
RGD ID:13677038
Promoter ID:EPDNEW_M22668
Type:single initiation site
Name:Zeb1_2
Description:Mus musculus zinc finger E-box binding homeobox 1 , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M22665  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38185,704,713 - 5,704,773EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1344313 AgrOrtholog
Ensembl Genes ENSMUSG00000024238 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000025081 ENTREZGENE
  ENSMUSP00000025081.6 UniProtKB/Swiss-Prot
  ENSMUSP00000124395.2 UniProtKB/TrEMBL
  ENSMUSP00000124507.3 UniProtKB/TrEMBL
  ENSMUSP00000124815.2 UniProtKB/TrEMBL
  ENSMUSP00000135125.3 UniProtKB/TrEMBL
  ENSMUSP00000157056.2 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000025081 ENTREZGENE
  ENSMUST00000025081.13 UniProtKB/Swiss-Prot
  ENSMUST00000159390.8 UniProtKB/TrEMBL
  ENSMUST00000160910.2 UniProtKB/TrEMBL
  ENSMUST00000161295.8 UniProtKB/TrEMBL
  ENSMUST00000175925.8 UniProtKB/TrEMBL
  ENSMUST00000224200.3 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Di19_Zn_binding_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:21417 UniProtKB/Swiss-Prot
MGD MGI:1344313 ENTREZGENE
NCBI Gene 21417 ENTREZGENE
PANTHER HISTONE H4 TRANSCRIPTION FACTOR-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC FINGER E-BOX-BINDING HOMEOBOX 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-Di19 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Zeb1 PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF57667 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A3Q4EHM2_MOUSE UniProtKB/TrEMBL
  A4QPD1_MOUSE UniProtKB/TrEMBL
  E0CX96_MOUSE UniProtKB/TrEMBL
  E0CY37_MOUSE UniProtKB/TrEMBL
  E9PXY5_MOUSE UniProtKB/TrEMBL
  H3BJU2_MOUSE UniProtKB/TrEMBL
  Q3URK4_MOUSE UniProtKB/TrEMBL
  Q3V439_MOUSE UniProtKB/TrEMBL
  Q62519 ENTREZGENE
  Q64318 ENTREZGENE
  Q8C5P2_MOUSE UniProtKB/TrEMBL
  ZEB1_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary A4QPD2 UniProtKB/Swiss-Prot
  Q62519 UniProtKB/Swiss-Prot