Slc22a20 (solute carrier family 22 (organic anion transporter), member 20) - Rat Genome Database

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Gene: Slc22a20 (solute carrier family 22 (organic anion transporter), member 20) Mus musculus
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Symbol: Slc22a20
Name: solute carrier family 22 (organic anion transporter), member 20
RGD ID: 1551797
MGI Page MGI
Description: Predicted to be involved in monoatomic ion transport and transmembrane transport. Predicted to be located in membrane. Is expressed in embryo; nasal cavity mucosa; and testis. Orthologous to human SLC22A20P (solute carrier family 22 member 20, pseudogene).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Gm963; MGC54868; mOA; mOAT6; OAT1-L; OAT1-like organic anion transporter; organic anion transporter 6; SLC22 organic anion transporter; solute carrier family 22 member 20
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39196,020,262 - 6,036,171 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl196,020,262 - 6,036,171 (-)EnsemblGRCm39 Ensembl
GRCm38195,970,234 - 5,986,143 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl195,970,234 - 5,986,143 (-)EnsemblGRCm38mm10GRCm38
MGSCv37195,970,234 - 5,986,143 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36195,970,234 - 5,986,143 (-)NCBIMGSCv36mm8
Celera195,840,305 - 5,856,573 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map194.34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:14681479   PMID:15369770   PMID:15489334   PMID:16141072   PMID:16141073  
PMID:16478971   PMID:17094945   PMID:17553798   PMID:18174163   PMID:19737926   PMID:20519554   PMID:21267068   PMID:21873635  


Genomics

Comparative Map Data
Slc22a20
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39196,020,262 - 6,036,171 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl196,020,262 - 6,036,171 (-)EnsemblGRCm39 Ensembl
GRCm38195,970,234 - 5,986,143 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl195,970,234 - 5,986,143 (-)EnsemblGRCm38mm10GRCm38
MGSCv37195,970,234 - 5,986,143 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36195,970,234 - 5,986,143 (-)NCBIMGSCv36mm8
Celera195,840,305 - 5,856,573 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map194.34NCBI
SLC22A20P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381165,213,840 - 65,242,757 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1165,213,873 - 65,242,086 (+)EnsemblGRCh38hg38GRCh38
GRCh371164,981,311 - 65,010,228 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361164,737,885 - 64,766,133 (+)NCBINCBI36Build 36hg18NCBI36
Celera1162,307,628 - 62,336,670 (+)NCBICelera
Cytogenetic Map11q13.1NCBI
HuRef1161,308,553 - 61,337,318 (+)NCBIHuRef
CHM1_11164,864,929 - 64,894,292 (+)NCBICHM1_1
T2T-CHM13v2.01165,207,124 - 65,236,163 (+)NCBIT2T-CHM13v2.0
Slc22a20
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81212,686,691 - 212,703,163 (-)NCBIGRCr8
mRatBN7.21203,257,374 - 203,273,854 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1203,257,374 - 203,273,822 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1211,610,794 - 211,627,181 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01218,702,768 - 218,719,246 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01211,393,827 - 211,410,303 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01221,327,608 - 221,344,367 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1221,328,711 - 221,343,889 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01228,262,056 - 228,278,557 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41208,604,446 - 208,618,094 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11208,756,795 - 208,771,547 (-)NCBI
Celera1200,793,137 - 200,807,634 (-)NCBICelera
Cytogenetic Map1q43NCBI
Slc22a20
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542219,979,250 - 20,005,115 (-)NCBIChiLan1.0ChiLan1.0
SLC22A20
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2966,448,334 - 66,476,111 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11167,491,664 - 67,519,117 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01160,577,847 - 60,604,956 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11163,918,545 - 63,945,161 (+)NCBIpanpan1.1PanPan1.1panPan2
LOC612044
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11851,955,914 - 51,983,134 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1850,564,134 - 50,591,376 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01852,997,117 - 53,024,615 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11852,093,497 - 52,121,088 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01851,666,754 - 51,694,700 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01852,461,344 - 52,489,028 (-)NCBIUU_Cfam_GSD_1.0
LOC101971524
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049477,718,170 - 7,735,484 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365994,160,406 - 4,177,377 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC22A20
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.126,969,878 - 6,996,239 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.226,101,900 - 6,127,700 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC22A20
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.118,985,585 - 9,012,420 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666038106,356,456 - 106,397,849 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc22a20
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476721,120,347 - 21,146,228 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc22a20
682 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:185
Count of miRNA genes:151
Interacting mature miRNAs:170
Transcripts:ENSMUST00000041827
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142302Nstr1_mnerve sheath tumor resistance QTL 1 (mouse)Not determined19122371338Mouse
1301271Datd_mdopamine transporter density (mouse)Not determined19132340234Mouse
1300923Bits4_mbitterness sensitivity 4 (mouse)Not determined19332321637323348Mouse
11039522Tbbr4_mTrypanosoma brucei brucei response 4 (mouse)19531332639313470Mouse
25394536Skmw86_mskeletal muscle weight 86, TA (mouse)1950648178957825Mouse
4142161Drinksac2_mdrink saccharin 2 (mouse)Not determined120695286Mouse
1357819Tgct2_mtesticular germ cell tumor 2 (mouse)Not determined19332855120539663Mouse
4142406Pbctlp1_mperipheral blood cytotoxic T lymphocyte percentage 1 (mouse)Not determined132875174Mouse
1301800Faq10_mfluctuating asymmetry QTL 10 (mouse)Not determined19332321637323348Mouse
1300776Lfp3_mlong free running period 3 (mouse)Not determined19120328703Mouse
1300904Chab5_mcholesterol absorption 5 (mouse)Not determined19165376435653927Mouse
26884385Skwq14_mskull length QTL 14, 16 week (mouse)19325000035877400Mouse
1300591Pas3_mpulmonary adenoma susceptibility 3 (mouse)Not determined19332321637323348Mouse
1302126Skull26_mskull morphology 26 (mouse)Not determined19332321637323348Mouse

Markers in Region
Gm963  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38195,971,489 - 5,973,022UniSTSGRCm38
MGSCv37195,971,489 - 5,973,022UniSTSGRCm37
Celera195,841,560 - 5,843,089UniSTS
Cytogenetic Map19AUniSTS
cM Map19 UniSTS
Slc22a20  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map19AUniSTS


Sequence


Ensembl Acc Id: ENSMUST00000041827   ⟹   ENSMUSP00000049473
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl196,020,262 - 6,036,171 (-)Ensembl
GRCm38.p6 Ensembl195,970,234 - 5,986,143 (-)Ensembl
Ensembl Acc Id: ENSMUST00000237046
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl196,030,388 - 6,036,171 (-)Ensembl
GRCm38.p6 Ensembl195,980,360 - 5,986,143 (-)Ensembl
RefSeq Acc Id: NM_198650   ⟹   NP_941052
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39196,020,262 - 6,036,171 (-)NCBI
GRCm38195,970,234 - 5,986,143 (-)NCBI
MGSCv37195,970,234 - 5,986,143 (-)RGD
Celera195,840,305 - 5,856,573 (-)RGD
cM Map19 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_941052 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH46588 (Get FASTA)   NCBI Sequence Viewer  
  AAO91751 (Get FASTA)   NCBI Sequence Viewer  
  EDL33191 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000049473
  ENSMUSP00000049473.8
GenBank Protein Q80UJ1 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_941052   ⟸   NM_198650
- UniProtKB: Q5JBT1 (UniProtKB/Swiss-Prot),   Q80UJ1 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000049473   ⟸   ENSMUST00000041827

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q80UJ1-F1-model_v2 AlphaFold Q80UJ1 1-556 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2685809 AgrOrtholog
Ensembl Genes ENSMUSG00000037451 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000041827 ENTREZGENE
  ENSMUST00000041827.8 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.1250.20 UniProtKB/Swiss-Prot
InterPro MFS_dom UniProtKB/Swiss-Prot
  MFS_sugar_transport-like UniProtKB/Swiss-Prot
  MFS_trans_sf UniProtKB/Swiss-Prot
KEGG Report mmu:381203 UniProtKB/Swiss-Prot
MGD MGI:2685809 ENTREZGENE
NCBI Gene 381203 ENTREZGENE
PANTHER SOLUTE CARRIER FAMILY 22 MEMBER UniProtKB/Swiss-Prot
  SOLUTE CARRIER FAMILY 22 MEMBER 20 UniProtKB/Swiss-Prot
Pfam Sugar_tr UniProtKB/Swiss-Prot
PhenoGen Slc22a20 PhenoGen
PROSITE MFS UniProtKB/Swiss-Prot
Superfamily-SCOP SSF103473 UniProtKB/Swiss-Prot
UniProt Q5JBT1 ENTREZGENE
  Q80UJ1 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q5JBT1 UniProtKB/Swiss-Prot