Pygo2 (pygopus 2) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Pygo2 (pygopus 2) Mus musculus
Analyze
Symbol: Pygo2
Name: pygopus 2
RGD ID: 1551758
MGI Page MGI
Description: Enables chromatin binding activity; histone acetyltransferase regulator activity; and histone binding activity. Involved in canonical Wnt signaling pathway. Acts upstream of or within several processes, including lens development in camera-type eye; regulation of mammary gland epithelial cell proliferation; and spermatid nucleus differentiation. Located in nucleus. Is expressed in several structures, including alimentary system; brain; genitourinary system; respiratory system; and skin. Orthologous to human PYGO2 (pygopus family PHD finger 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1190004M21Rik; mpyg; mpygo2; pygopus homolog 2
RGD Orthologs
Human
Rat
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39389,337,521 - 89,342,438 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl389,337,521 - 89,342,435 (+)EnsemblGRCm39 Ensembl
GRCm38389,430,114 - 89,435,131 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl389,430,214 - 89,435,128 (+)EnsemblGRCm38mm10GRCm38
MGSCv37389,234,759 - 89,239,050 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36389,516,141 - 89,521,061 (+)NCBIMGSCv36mm8
Celera389,465,970 - 89,470,261 (+)NCBICelera
Cytogenetic Map3F1NCBI
cM Map339.12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal branching of the mammary ductal tree  (IAGP)
abnormal cornea morphology  (IAGP)
abnormal craniofacial morphology  (IEA)
abnormal eye morphology  (IEA)
abnormal hair follicle development  (IAGP)
abnormal hindbrain morphology  (IEA)
abnormal kidney development  (IAGP)
abnormal kidney morphology  (IAGP)
abnormal lens development  (IAGP)
abnormal lens epithelium morphology  (IAGP)
abnormal lens fiber morphology  (IAGP)
abnormal lens induction  (IAGP)
abnormal limb morphology  (IEA)
abnormal lung development  (IAGP)
abnormal mammary gland development  (IAGP)
abnormal mammary gland embryonic development  (IAGP)
abnormal mammary gland growth during lactation  (IAGP)
abnormal mammary gland growth during pregnancy  (IAGP)
abnormal midbrain morphology  (IEA)
abnormal neural tube closure  (IEA)
abnormal optic cup morphology  (IAGP)
abnormal optic placode morphology  (IAGP)
abnormal retina morphology  (IAGP)
abnormal small intestine morphology  (IAGP)
abnormal spermatid morphology  (IAGP)
abnormal ureter development  (IAGP)
abnormal uterus morphology  (IEA)
anophthalmia  (IEA)
aphakia  (IAGP)
cleft palate  (IAGP)
decreased birth body size  (IAGP)
decreased birth weight  (IAGP)
decreased fetal size  (IAGP)
decreased mammary gland epithelial cell proliferation  (IAGP)
delayed eyelid opening  (IAGP)
domed cranium  (IAGP)
edema  (IEA)
exencephaly  (IAGP)
fetal growth retardation  (IAGP)
hemorrhage  (IEA)
hydrometra  (IEA)
increased brain size  (IAGP)
lactation failure  (IAGP)
male infertility  (IAGP)
microphthalmia  (IAGP)
neonatal lethality, complete penetrance  (IAGP)
neonatal lethality, incomplete penetrance  (IAGP)
oligozoospermia  (IAGP)
perinatal lethality, complete penetrance  (IAGP)
persistence of hyaloid vascular system  (IEA)
preweaning lethality, complete penetrance  (IEA)
reduced male fertility  (IAGP)
retina fold  (IAGP)
small lens  (IAGP)
small optic pit  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7671812   PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:15234002   PMID:15618518   PMID:15782199   PMID:16141072   PMID:16141073  
PMID:17425782   PMID:17428831   PMID:17458864   PMID:18452912   PMID:18614164   PMID:18799693   PMID:19487454   PMID:21267068   PMID:21677750   PMID:21873635   PMID:23334328   PMID:23637336  
PMID:23684539   PMID:23955574   PMID:24194600   PMID:24952961   PMID:24982158   PMID:25184676   PMID:27647933   PMID:27811361   PMID:28174279   PMID:30279163   PMID:30366904   PMID:30760710  
PMID:32586983   PMID:32808927   PMID:33635162   PMID:35132438   PMID:35707871   PMID:36897957   PMID:38355793  


Genomics

Comparative Map Data
Pygo2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39389,337,521 - 89,342,438 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl389,337,521 - 89,342,435 (+)EnsemblGRCm39 Ensembl
GRCm38389,430,114 - 89,435,131 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl389,430,214 - 89,435,128 (+)EnsemblGRCm38mm10GRCm38
MGSCv37389,234,759 - 89,239,050 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36389,516,141 - 89,521,061 (+)NCBIMGSCv36mm8
Celera389,465,970 - 89,470,261 (+)NCBICelera
Cytogenetic Map3F1NCBI
cM Map339.12NCBI
PYGO2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381154,957,026 - 154,961,782 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1154,957,026 - 154,963,853 (-)EnsemblGRCh38hg38GRCh38
GRCh371154,929,502 - 154,934,258 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361153,196,126 - 153,200,882 (-)NCBINCBI36Build 36hg18NCBI36
Build 341151,742,575 - 151,747,331NCBI
Celera1128,000,527 - 128,005,283 (-)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1126,291,247 - 126,296,003 (-)NCBIHuRef
CHM1_11156,325,877 - 156,330,632 (-)NCBICHM1_1
T2T-CHM13v2.01154,096,387 - 154,101,143 (-)NCBIT2T-CHM13v2.0
Pygo2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82177,147,407 - 177,152,476 (+)NCBIGRCr8
mRatBN7.22174,849,670 - 174,854,758 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2174,849,936 - 174,854,758 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2181,995,576 - 182,000,249 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02180,017,959 - 180,022,632 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02174,618,553 - 174,623,231 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02188,757,167 - 188,762,285 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2188,757,489 - 188,762,282 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02208,171,437 - 208,176,567 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42181,628,693 - 181,633,360 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12181,578,648 - 181,582,650 (+)NCBI
Celera2168,790,790 - 168,795,470 (+)NCBICelera
Cytogenetic Map2q34NCBI
PYGO2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2194,878,730 - 94,883,453 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1194,611,030 - 94,615,584 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01130,305,547 - 130,310,270 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11133,912,411 - 133,920,308 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1133,912,411 - 133,920,308 (-)Ensemblpanpan1.1panPan2
PYGO2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1742,509,760 - 42,513,744 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl742,509,968 - 42,512,091 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha742,000,993 - 42,004,825 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0742,380,064 - 42,383,893 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl742,379,911 - 42,383,891 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1742,159,756 - 42,163,584 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0742,213,362 - 42,217,193 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0742,496,947 - 42,500,777 (+)NCBIUU_Cfam_GSD_1.0
Pygo2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505825,476,599 - 25,480,652 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365804,507,925 - 4,511,107 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365804,506,982 - 4,511,044 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PYGO2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1208,866,928 - 8,871,645 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl208,866,711 - 8,871,770 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660388,201,899 - 8,206,849 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pygo2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248852,521,368 - 2,525,449 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248852,521,230 - 2,525,449 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pygo2
92 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2078
Count of miRNA genes:618
Interacting mature miRNAs:767
Transcripts:ENSMUST00000060061, ENSMUST00000107413, ENSMUST00000125830, ENSMUST00000133680, ENSMUST00000136573, ENSMUST00000146037
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
26884378Skwq6_mskull length QTL 6, 10 week (mouse)351907421102307316Mouse
1301971Cia5_mcollagen induced arthritis QTL 5 (mouse)Not determined366046658100046795Mouse
1301392Eae3_msusceptibility to experimental allergic encephalomyelitis 3 (mouse)Not determined379548730113548837Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382147043116147184Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383463991117464137Mouse
26884380Skwq1_mskull length QTL 1, 5 week (mouse)343954435101607316Mouse
14746984Manh54_mmandible shape 54 (mouse)385289152119289152Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387228015121228015Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
1301272Cfsw1_mcystic fibrosis survival to weaning 1 (mouse)Not determined383882912117883044Mouse
1301791Char4_mP. chabaudi malaria resistance QTL 4 (mouse)Not determined369625509100655290Mouse
11049572Lmr11c_mleishmaniasis resistance 11c (mouse)372139967106140094Mouse
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
4141294Bmd24_mbone mineral density 24 (mouse)Not determined36174006195740241Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387208904125316236Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
4142178Ctrq2_mC. trachomatis resistance QTL 2 (mouse)Not determined389139967137453008Mouse
1300595Tmevd2_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 2 (mouse)Not determined375463302109463549Mouse
11251721Ewc3_methanol withdrawal and consumption 3 (mouse)369568554103568554Mouse
1300982Lmr11_mleishmaniasis resistance 11 (mouse)Not determined372139967106140094Mouse
12880419V125Dq4_mvitamin D active form serum level QTL 4 (mouse)35890730792907307Mouse
1301947Pcfm3_mperiosteal circumference and femur length 3 (mouse)Not determined381084652115084797Mouse
4142099Cq3_mcholesterol QTL 3 (mouse)Not determined384888918118889067Mouse
11039512Ltpr3b_mLeishmania tropica response 3b (mouse)383463991117464137Mouse
11039519Ltpr3_mLeishmania tropica response 3 (mouse)356704102100464137Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
11039507Ltpr3g_mLeishmania tropica response 3g (mouse)383463991117464137Mouse
11039508Ltpr3f_mLeishmania tropica response 3f (mouse)383463991117464137Mouse
1301422Sle11_msystematic lupus erythematosus susceptibility 11 (mouse)Not determined370208904104209042Mouse
11039509Ltpr3e_mLeishmania tropica response 3e (mouse)383463991117464137Mouse
11039510Ltpr3d_mLeishmania tropica response 3d (mouse)383463991117464137Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)340954435115793649Mouse
11039511Ltpr3c_mLeishmania tropica response 3c (mouse)383463991117464137Mouse

Markers in Region
Pygo2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38389,433,720 - 89,433,836UniSTSGRCm38
MGSCv37389,237,642 - 89,237,758UniSTSGRCm37
Celera389,468,853 - 89,468,969UniSTS
Cytogenetic Map3F1UniSTS
cM Map3 UniSTS
UniSTS:234737  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38389,434,735 - 89,434,917UniSTSGRCm38
MGSCv37389,238,657 - 89,238,839UniSTSGRCm37
Celera389,469,868 - 89,470,050UniSTS
Cytogenetic Map3F1UniSTS
UniSTS:234738  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38389,434,674 - 89,434,962UniSTSGRCm38
MGSCv37389,238,596 - 89,238,884UniSTSGRCm37
Celera389,469,807 - 89,470,095UniSTS
Cytogenetic Map3F1UniSTS


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001293763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001293766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001293767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001293768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001429109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001429110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_026869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC171273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI843615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK132759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY486147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC025640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC030445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ571639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY009144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY249701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000060061   ⟹   ENSMUSP00000053672
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl389,337,568 - 89,342,435 (+)Ensembl
GRCm38.p6 Ensembl389,430,261 - 89,435,128 (+)Ensembl
Ensembl Acc Id: ENSMUST00000107413   ⟹   ENSMUSP00000103036
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl389,338,144 - 89,342,435 (+)Ensembl
GRCm38.p6 Ensembl389,430,837 - 89,435,128 (+)Ensembl
Ensembl Acc Id: ENSMUST00000125830
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl389,338,339 - 89,340,299 (+)Ensembl
GRCm38.p6 Ensembl389,431,032 - 89,432,992 (+)Ensembl
Ensembl Acc Id: ENSMUST00000133680
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl389,338,047 - 89,339,989 (+)Ensembl
GRCm38.p6 Ensembl389,430,740 - 89,432,682 (+)Ensembl
Ensembl Acc Id: ENSMUST00000136573
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl389,337,521 - 89,340,050 (+)Ensembl
GRCm38.p6 Ensembl389,430,214 - 89,432,743 (+)Ensembl
Ensembl Acc Id: ENSMUST00000146037
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl389,337,731 - 89,338,476 (+)Ensembl
GRCm38.p6 Ensembl389,430,424 - 89,431,169 (+)Ensembl
RefSeq Acc Id: NM_001293763   ⟹   NP_001280692
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39389,337,521 - 89,342,438 (+)NCBI
GRCm38389,430,214 - 89,435,131 (+)NCBI
Celera389,465,275 - 89,470,264 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001293766   ⟹   NP_001280695
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39389,337,521 - 89,342,438 (+)NCBI
GRCm38389,430,214 - 89,435,131 (+)NCBI
Celera389,465,275 - 89,470,264 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001293767   ⟹   NP_001280696
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39389,338,047 - 89,342,438 (+)NCBI
GRCm38389,430,740 - 89,435,131 (+)NCBI
Celera389,465,275 - 89,470,264 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001293768   ⟹   NP_001280697
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39389,337,521 - 89,342,438 (+)NCBI
GRCm38389,430,214 - 89,435,131 (+)NCBI
Celera389,465,275 - 89,470,264 (+)NCBI
Sequence:
RefSeq Acc Id: NM_026869   ⟹   NP_081145
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39389,338,144 - 89,342,438 (+)NCBI
GRCm38389,430,837 - 89,435,131 (+)NCBI
MGSCv37389,234,759 - 89,239,050 (+)RGD
Celera389,465,275 - 89,470,264 (+)NCBI
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_030252784   ⟹   XP_030108644
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39389,337,737 - 89,342,438 (+)NCBI
GRCm38389,430,114 - 89,435,131 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030252785   ⟹   XP_030108645
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39389,337,588 - 89,342,438 (+)NCBI
GRCm38389,430,281 - 89,435,131 (+)NCBI
Sequence:
RefSeq Acc Id: NP_081145   ⟸   NM_026869
- Peptide Label: isoform b
- UniProtKB: Q3V113 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001280697   ⟸   NM_001293768
- Peptide Label: isoform a
- UniProtKB: Q80V76 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001280692   ⟸   NM_001293763
- Peptide Label: isoform b
- UniProtKB: Q3V113 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001280696   ⟸   NM_001293767
- Peptide Label: isoform b
- UniProtKB: Q3V113 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001280695   ⟸   NM_001293766
- Peptide Label: isoform b
- UniProtKB: Q3V113 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030108644   ⟸   XM_030252784
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030108645   ⟸   XM_030252785
- Peptide Label: isoform X1
Ensembl Acc Id: ENSMUSP00000053672   ⟸   ENSMUST00000060061
Ensembl Acc Id: ENSMUSP00000103036   ⟸   ENSMUST00000107413
Protein Domains
PHD-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q80V76-F1-model_v2 AlphaFold Q80V76 1-405 view protein structure

Promoters
RGD ID:6834332
Promoter ID:MM_KWN:34971
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000060061,   NM_026869,   OTTMUST00000052399,   OTTMUST00000052400,   OTTMUST00000052401,   UC008PZQ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36389,234,276 - 89,234,867 (+)MPROMDB
RGD ID:6881280
Promoter ID:EPDNEW_M4083
Type:initiation region
Name:Pygo2_1
Description:Mus musculus pygopus 2 , transcript variant 4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4084  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38389,430,424 - 89,430,484EPDNEW
RGD ID:6881266
Promoter ID:EPDNEW_M4084
Type:initiation region
Name:Pygo2_2
Description:Mus musculus pygopus 2 , transcript variant 4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4083  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38389,430,740 - 89,430,800EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1916161 AgrOrtholog
Ensembl Genes ENSMUSG00000047824 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000060061 ENTREZGENE
  ENSMUST00000060061.11 UniProtKB/TrEMBL
  ENSMUST00000107413 ENTREZGENE
  ENSMUST00000107413.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
InterPro Wnt_Signal_Transd_Protein UniProtKB/TrEMBL
  Zinc_finger_PHD-type_CS UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/TrEMBL
  Znf_PHD UniProtKB/TrEMBL
  Znf_PHD-finger UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
KEGG Report mmu:68911 UniProtKB/TrEMBL
MGD MGI:1916161 ENTREZGENE
NCBI Gene 68911 ENTREZGENE
PANTHER PYGOPUS UniProtKB/TrEMBL
  PYGOPUS HOMOLOG 2 UniProtKB/TrEMBL
Pfam PHD UniProtKB/TrEMBL
PhenoGen Pygo2 PhenoGen
PROSITE ZF_PHD_1 UniProtKB/TrEMBL
  ZF_PHD_2 UniProtKB/TrEMBL
SMART PHD UniProtKB/TrEMBL
Superfamily-SCOP FYVE_PHD_ZnF UniProtKB/TrEMBL
UniProt Q3V113 ENTREZGENE, UniProtKB/TrEMBL
  Q3V4A4_MOUSE UniProtKB/TrEMBL
  Q80V76 ENTREZGENE, UniProtKB/TrEMBL