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Gene: Cct5 (chaperonin containing TCP1 subunit 5) Mus musculus

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Symbol:

Cct5

Name:

chaperonin containing TCP1 subunit 5

RGD ID:

1551615

MGI Page

MGI

Description:

Predicted to enable several functions, including G-protein beta-subunit binding activity; beta-tubulin binding activity; and mRNA binding activity. Acts upstream of or within binding activity of sperm to zona pellucida. Located in cell body. Part of chaperonin-containing T-complex. Is expressed in 1st branchial arch mandibular component and mandible primordium. Orthologous to human CCT5 (chaperonin containing TCP1 subunit 5).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

CCT-epsilon; Ccte; chaperonin containing Tcp1, subunit 5 (epsilon); chaperonin subunit 5 (epsilon); mKIAA0098; T-complex protein 1 subunit epsilon; TCP; TCP-1-epsilon; TCPE

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CCT5 (chaperonin containing TCP1 subunit 5)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Cct5 (chaperonin containing TCP1 subunit 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cct5 (chaperonin containing TCP1 subunit 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CCT5 (chaperonin containing TCP1 subunit 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CCT5 (chaperonin containing TCP1 subunit 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cct5 (chaperonin containing TCP1 subunit 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CCT5 (chaperonin containing TCP1 subunit 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CCT5 (chaperonin containing TCP1 subunit 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cct5 (chaperonin containing TCP1 subunit 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Cct5 (chaperonin containing TCP1 subunit 5)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	CCT5 (chaperonin containing TCP1 subunit 5)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	cct5 (chaperonin containing TCP1, subunit 5 (epsilon))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid\|ZFIN)
Drosophila melanogaster (fruit fly):	CCT5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	CCT5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	cct-5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	cct5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	31,590,946 - 31,601,992 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	31,590,946 - 31,601,950 (-)	Ensembl		GRCm39 Ensembl
GRCm38	15	31,590,800 - 31,601,846 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	31,590,800 - 31,601,804 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	31,520,639 - 31,531,559 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	31,535,473 - 31,546,393 (-)	NCBI		MGSCv36	mm8
Celera	15	32,284,699 - 32,295,619 (-)	NCBI		Celera
Cytogenetic Map	15	B2	NCBI
cM Map	15	13.02	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Animal Disease Models (ISO)

Breast Neoplasms (ISO)

Chemical and Drug Induced Liver Injury (ISO)

COVID-19 (ISO)

Hereditary Sensory Neuropathy with Spastic Paraplegia, Autosomal Recessive (ISO)

hereditary spastic paraplegia (ISO)

human immunodeficiency virus infectious disease (ISO)

lung adenocarcinoma (ISO)

motor peripheral neuropathy (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (ISO)

1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane (EXP,ISO)

1,2-dimethylhydrazine (EXP)

1-chloro-2,4-dinitrobenzene (ISO)

17alpha-ethynylestradiol (EXP,ISO)

17beta-estradiol (EXP)

1H-pyrazole (EXP)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

2,4-dinitrotoluene (ISO)

2,6-dimethoxyphenol (ISO)

2,6-dinitrotoluene (ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-chloropropane-1,2-diol (ISO)

4,4'-sulfonyldiphenol (EXP,ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

Aroclor 1254 (EXP)

arsenite(3-) (ISO)

atrazine (ISO)

bathocuproine disulfonic acid (ISO)

beauvericin (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

Bisphenol B (ISO)

bisphenol F (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

captan (EXP)

carbon nanotube (EXP)

chromium trinitrate (EXP)

clofibrate (EXP)

cobalt dichloride (ISO)

copper atom (EXP)

copper(0) (EXP)

CU-O LINKAGE (ISO)

cycloheximide (ISO)

cyclophosphamide (ISO)

cyclosporin A (ISO)

DDE (ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

doxorubicin (ISO)

enniatin (ISO)

enzyme inhibitor (ISO)

ethanol (EXP)

finasteride (ISO)

flutamide (ISO)

folic acid (EXP,ISO)

FR900359 (ISO)

furan (ISO)

furfural (ISO)

gentamycin (ISO)

gold atom (EXP)

gold(0) (EXP)

hyaluronic acid (ISO)

hydrogen peroxide (ISO)

ionomycin (ISO)

ivermectin (ISO)

lead(II) chloride (ISO)

lovastatin (EXP)

menadione (ISO)

methamphetamine (ISO)

methyl methanesulfonate (ISO)

miconazole (EXP)

N-acetyl-beta-D-glucosamine (ISO)

N-acetyl-D-glucosamine (ISO)

N-nitrosomorpholine (ISO)

naphthalene (EXP)

nefazodone (ISO)

nickel atom (ISO)

nimesulide (ISO)

nitrates (EXP)

PCB138 (ISO)

PhIP (ISO)

phorbol 13-acetate 12-myristate (ISO)

piperonyl butoxide (ISO)

pirinixic acid (EXP)

potassium chromate (EXP)

pyrrolidine dithiocarbamate (ISO)

quercetin (ISO)

resveratrol (ISO)

rotenone (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sodium chloride (ISO)

sodium dichromate (ISO)

tamoxifen (EXP)

temozolomide (ISO)

tetrachloromethane (EXP,ISO)

thioacetamide (ISO)

thiram (ISO)

titanium dioxide (EXP)

trimellitic anhydride (EXP)

ursodeoxycholic acid (ISO)

valdecoxib (ISO)

valproic acid (ISO)

warfarin (EXP)

zearalenone (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

binding of sperm to zona pellucida (IDA)

chaperone mediated protein folding independent of cofactor (IEA)

chaperone-mediated protein folding (ISO)

positive regulation of establishment of protein localization to telomere (ISO)

positive regulation of protein localization to Cajal body (ISO)

positive regulation of telomerase RNA localization to Cajal body (ISO)

positive regulation of telomere maintenance via telomerase (IEA,ISO)

protein folding (IBA,ISO)

protein stabilization (IEA,ISO)

response to virus (IEA)

Cellular Component

cell body (IDA)

centrosome (ISO)

chaperonin-containing T-complex (IBA,IDA,ISO)

microtubule (IEA,ISO)

myelin sheath (HDA)

zona pellucida receptor complex (IEA)

Molecular Function

ATP binding (IEA)

ATP hydrolysis activity (IEA)

ATP-dependent protein folding chaperone (IEA)

beta-tubulin binding (IEA,ISO)

G-protein beta-subunit binding (ISO,ISS)

mRNA 3'-UTR binding (IEA,ISO)

mRNA 5'-UTR binding (IEA,ISO)

protein binding (IPI)

protein folding chaperone (ISO)

unfolded protein binding (IBA,IEA)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal digit morphology (IEA)

abnormal embryo size (IEA)

abnormal retina morphology (IEA)

abnormal skin morphology (IEA)

abnormal uterus morphology (IEA)

embryonic growth retardation (IEA)

embryonic lethality prior to organogenesis (IEA)

prenatal lethality prior to heart atrial septation (IEA)

preweaning lethality, complete penetrance (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Identification of six Tcp-1-related genes encoding divergent subunits of the TCP-1-containing chaperonin.	Kubota H, etal., Curr Biol 1994 Feb 1;4(2):89-99.
2.	The chaperonin containing t-complex polypeptide 1 (TCP-1). Multisubunit machinery assisting in protein folding and assembly in the eukaryotic cytosol.	Kubota H, etal., Eur J Biochem 1995 May 15;230(1):3-16.
3.	Structures and co-regulated expression of the genes encoding mouse cytosolic chaperonin CCT subunits.	Kubota H, etal., Eur J Biochem 1999 Jun;262(2):492-500.
4.	MGDs mouse GO annotations	MGD data from the GO Consortium
5.	axl, a transforming gene isolated from primary human myeloid leukemia cells, encodes a novel receptor tyrosine kinase.	O'Bryan JP, etal., Mol Cell Biol 1991 Oct;11(10):5016-31.
6.	Prediction of the coding sequences of mouse homologues of KIAA gene: III. the complete nucleotide sequences of 500 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries.	Okazaki N, etal., DNA Res 2003 Aug 31;10(4):167-80.
7.	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
8.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
9.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:7828721	PMID:9250675	PMID:10349636	PMID:10601855	PMID:10604479	PMID:10747865	PMID:10748209	PMID:10922068	PMID:11042159	PMID:11076861	PMID:11217851	PMID:11461004
PMID:12477932	PMID:12520002	PMID:14610273	PMID:15782199	PMID:16141072	PMID:16141073	PMID:16399879	PMID:17110338	PMID:17309103	PMID:17634366	PMID:17962088	PMID:17967808
PMID:18307411	PMID:18448421	PMID:21267068	PMID:21677750	PMID:21873635	PMID:21880732	PMID:22083510	PMID:22794259	PMID:23716698	PMID:23872636	PMID:23897027	PMID:24095980
PMID:24457600	PMID:25737280	PMID:25755282	PMID:26514267	PMID:28378742	PMID:29111324	PMID:30068389	PMID:30457570	PMID:30562941	PMID:30595499	PMID:30713523	PMID:31040226
PMID:32325033	PMID:32554809	PMID:35012549	PMID:35449600	PMID:36293380	PMID:36417873	PMID:37142655	PMID:38153635	PMID:38355793

Genomics

Comparative Map Data

Cct5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	31,590,946 - 31,601,992 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	31,590,946 - 31,601,950 (-)	Ensembl		GRCm39 Ensembl
GRCm38	15	31,590,800 - 31,601,846 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	31,590,800 - 31,601,804 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	31,520,639 - 31,531,559 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	31,535,473 - 31,546,393 (-)	NCBI		MGSCv36	mm8
Celera	15	32,284,699 - 32,295,619 (-)	NCBI		Celera
Cytogenetic Map	15	B2	NCBI
cM Map	15	13.02	NCBI

CCT5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	10,249,921 - 10,266,412 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	10,249,929 - 10,266,389 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	10,250,033 - 10,266,524 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	10,303,282 - 10,319,501 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	5	10,303,281 - 10,319,500	NCBI
Celera	5	10,290,174 - 10,306,401 (+)	NCBI		Celera
Cytogenetic Map	5	p15.2	NCBI
HuRef	5	10,236,593 - 10,252,821 (+)	NCBI		HuRef
CHM1_1	5	10,250,148 - 10,266,375 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	5	10,189,222 - 10,205,724 (+)	NCBI		T2T-CHM13v2.0

Cct5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	84,302,621 - 84,313,773 (-)	NCBI		GRCr8
mRatBN7.2	2	82,591,750 - 82,602,903 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	82,590,630 - 82,602,930 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	89,634,005 - 89,645,161 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	87,755,580 - 87,766,736 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	82,811,868 - 82,823,024 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	84,667,578 - 84,678,730 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	84,667,633 - 84,678,790 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	104,340,314 - 104,351,466 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	83,681,785 - 83,692,937 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	83,626,748 - 83,637,899 (-)	NCBI
Celera	2	78,115,574 - 78,126,621 (-)	NCBI		Celera
Cytogenetic Map	2	q23	NCBI

Cct5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955426	131,871 - 144,354 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955426	132,106 - 144,251 (+)	NCBI	ChiLan1.0	ChiLan1.0

CCT5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	10,494,737 - 10,509,640 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	8,648,343 - 8,663,246 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	10,565,911 - 10,580,808 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	10,424,157 - 10,440,613 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	10,424,157 - 10,440,613 (+)	Ensembl	panpan1.1		panPan2

CCT5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	34	4,035,851 - 4,049,131 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	34	4,035,857 - 4,049,244 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	34	8,538,451 - 8,551,673 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	34	3,938,380 - 3,951,603 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	34	3,938,476 - 3,951,486 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	34	3,990,220 - 4,003,422 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	34	3,969,548 - 3,982,775 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	34	4,200,135 - 4,213,334 (-)	NCBI		UU_Cfam_GSD_1.0

Cct5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	237,034,724 - 237,047,654 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936643	2,354,799 - 2,368,048 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936643	2,354,799 - 2,368,048 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CCT5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	72,208,012 - 72,223,114 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	16	72,211,452 - 72,223,202 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

CCT5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	4	9,787,093 - 9,802,892 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	4	9,787,101 - 9,805,852 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666064	18,741,362 - 18,757,404 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cct5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624751	7,615,007 - 7,630,606 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624751	7,615,098 - 7,628,985 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Cct5
323 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	423
Count of miRNA genes:	334
Interacting mature miRNAs:	368
Transcripts:	ENSMUST00000022842, ENSMUST00000159121, ENSMUST00000159449, ENSMUST00000160174, ENSMUST00000161266
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
11252136	Modvl4_m	modifier of vacuolated lens (mouse)					15	5620494	39620614	Mouse
27226777	Tibl8_m	tibia length 8, 5 week (mouse)					15	6929481	84584201	Mouse
1302165	Yv_m	yellow value (mouse)			Not determined		15	13847006	47847148	Mouse
27226773	Tibl16_m	tibia length 16, 10 week (mouse)					15	6929481	75871849	Mouse
1301406	Egrd2_m	early growth rate (mouse)			Not determined		15	26311780	60311880	Mouse
1301020	Pheo_m	pheomelanin (mouse)			Not determined		15	13847006	47847148	Mouse
4141358	Ath22_m	atherosclerosis 22 (mouse)			Not determined			3464652	37464652	Mouse
10412172	Habiir5_m	hyperoxic acute lung injury imprinted region 5 (mouse)			Not determined		15	9273022	43311880	Mouse
4142252	Tailaq4_m	tail length adjusted QTL 4 (mouse)			Not determined			3489694	78601286	Mouse
1301760	Dob9_m	dietary obesity 9 (mouse)			Body fat amount	adiposity index	15	26035680	37781301	Mouse
27226759	Feml17_m	femur length 17, 10 week (mouse)					15	7629481	55263396	Mouse
27095940	Ulnl8_m	ulna length 8, 10 week (mouse)					15	7229481	55263396	Mouse
27226755	Feml22_m	femur length 22, 16 week (mouse)					15	7629481	59271849	Mouse
26884409	Bzwq16_m	bi-zygomatic width QTL 16, 16 week (mouse)					15	6129481	38000244	Mouse
26884412	Bzwq10_m	bi-zygomatic width QTL 10, 10 week (mouse)					15	6129481	71471849	Mouse
1301557	Bbaa22_m	B.burgdorferi-associated arthritis 22 (mouse)			Not determined		15	24462572	58462805	Mouse
1301433	Rapop5_m	radiation-induced apoptosis 5 (mouse)			Not determined		15	9273022	79474762	Mouse
1301951	Eila3_m	ethanol induced locomotor activity 3 (mouse)			Not determined		15	14927587	48927756	Mouse
27226800	Scvln20_m	sacral vertebrae length 2, 16 week (mouse)					15	26600086	66371849	Mouse
26884392	Humsd8_m	humerus midshaft diameter 8, 16 week (mouse)					15	29300146	76084200	Mouse
4141192	Ssrq2_m	stress response QTL 2 (mouse)			Not determined			9273022	56186850	Mouse
1300772	Bglq16_m	body growth late QTL 16 (mouse)			Not determined		15	26311780	60311880	Mouse
26884387	Skwq8_m	skull length QTL 8, 10 week (mouse)					15	6129481	68271849	Mouse
26884384	Skwq12_m	skull length QTL 12, 16 week (mouse)					15	6129481	50763396	Mouse
27226786	Feml11_m	femur length 11, 5 week (mouse)					15	6129481	75871849	Mouse
4141952	W3q7_m	weight 3 weeks QTL 7 (mouse)			Not determined			3489694	78601286	Mouse
26884442	Sklq6_m	skull length QTL 6, 5 week (mouse)					15	6129481	100797881	Mouse
27226717	Tibw4_m	tibia width 4, proximal, 10 week (mouse)					15	6129481	78684200	Mouse
1357526	Hyplip2_m	hyperlipidemia 2 (mouse)			Not determined		15	12402203	102896555	Mouse
26884439	Sklq11_m	skull length QTL 11, 10 week (mouse)					15	8129484	47663396	Mouse
4142448	Tailq6_m	tail length QTL 6 (mouse)			Not determined			3489694	78601286	Mouse
1357659	Epfpq4_m	epididymal fat percentage QTL 4 (mouse)			Not determined		15	3489694	78601286	Mouse
4141423	Nstr2_m	nerve sheath tumor resistance QTL 2 (mouse)			Not determined			14927587	48927756	Mouse
26884425	Cvht2_m	cranial vault height 2, 5 week (mouse)					15	28800146	102008435	Mouse
26884429	Zlq6_m	zygomatic length QTL 6, 10 week (mouse)					15	6829481	44963396	Mouse
1301450	Bpq6_m	blood pressure QTL 6 (mouse)			Not determined		15	28282646	62282739	Mouse
14928313	Manh78_m	mandible shape 78 (mouse)					15	21484641	55484641	Mouse
26884417	Bzwq4_m	bi-zygomatic width QTL 4, 5 week (mouse)					15	6129481	72471849	Mouse
12859288	Criq1_m	Citrobacter rodentium infection QTL 1 (mouse)					15	16033954	50033954	Mouse
1357512	Bsbob5_m	BSB obesity 5 (mouse)			Not determined		15	28282646	62282739	Mouse
26884423	Zlq10_m	zygomatic length QTL 10, 16 week (mouse)					15	20600086	50763396	Mouse
12859289	Criq3_m	Citrobacter rodentium infection QTL 3 (mouse)					15	22593765	56593765	Mouse
4141409	Radsvq1_m	radiation sensitivity QTL 1 (mouse)			Not determined			25484978	59484978	Mouse
1357514	Mbis3_m	Mycobacterium bovis-induced systemic lupus erythematosus 3 (mouse)			Not determined		16	26311780	60311880	Mouse
27095932	Ulnl11_m	ulna length 11, 16 week (mouse)					15	6129481	76384200	Mouse
1357559	Scfq2_m	subcutaneous fat pad weight QTL 2 (mouse)			Not determined		15	3489694	78601286	Mouse
1302007	Bbaa14_m	B.burgdorferi-associated arthritis 14 (mouse)			Not determined		15	14927587	48927756	Mouse
1301499	Bdln2_m	body length 2 (mouse)			Not determined		15	15645343	49645470	Mouse
27095922	Pglq11_m	pelvic girdle length QTL 11, 10 week (mouse)					15	8129484	38763395	Mouse
4142160	Femwf10_m	femur work to failure 10 (mouse)			Not determined			22893014	56893160	Mouse
10401902	Sicd2_m	seizure-induced cell death 2 (mouse)			Not determined		15	3474389	71197538	Mouse
27226734	Tibmd5_m	tibia midshaft diameter 5, 10 week (mouse)					15	6129481	86684201	Mouse
1301345	Bgeq14_m	body growth early QTL 14 (mouse)			Not determined		15	26311780	60311880	Mouse
1300967	Bdt6_m	bone density traits 6 (mouse)			Not determined		15	25295806	59295928	Mouse
4140994	Shali3_m	survival time to hyperoxic acute lung injury 3 (mouse)			Not determined			9273022	43311880	Mouse
27226721	Tibw8_m	tibia width 8, proximal, 16 week (mouse)					15	6929481	75871849	Mouse
26884452	Sklq17_m	skull length QTL 17, 16 week (mouse)					15	30200146	57963396	Mouse

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001348035	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_007637	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB022158	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC137842	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK077753	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK088184	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK129056	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK133857	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK136493	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK145445	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK146405	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK146425	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK150390	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK153911	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK167895	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK206127	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK213471	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK216446	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK217822	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK219685	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC092233	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC094427	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BY579491	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466541	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CJ086704	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CX238090	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	Z31555	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000022842 ⟹ ENSMUSP00000022842

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	15	31,590,946 - 31,601,950 (-)	Ensembl
GRCm38.p6 Ensembl	15	31,590,800 - 31,601,804 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000159121

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	15	31,595,587 - 31,601,886 (-)	Ensembl
GRCm38.p6 Ensembl	15	31,595,441 - 31,601,740 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000159449

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	15	31,593,591 - 31,594,674 (-)	Ensembl
GRCm38.p6 Ensembl	15	31,593,445 - 31,594,528 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000160174

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	15	31,592,128 - 31,593,207 (-)	Ensembl
GRCm38.p6 Ensembl	15	31,591,982 - 31,593,061 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000161266 ⟹ ENSMUSP00000125566

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	15	31,594,491 - 31,601,685 (-)	Ensembl
GRCm38.p6 Ensembl	15	31,594,345 - 31,601,539 (-)	Ensembl

RefSeq Acc Id:

NM_001348035 ⟹ NP_001334964

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	15	31,590,946 - 31,601,685 (-)	NCBI
GRCm38	15	31,590,800 - 31,601,539 (-)	NCBI

Sequence:

show sequence

GCGCTGGCGAGAGAGCAGCTCGGCCATGTGCTGGCCCGAAAGCTCGAGAATCTCCGGTGCCGGG
GAGCCCCTTTGGGCTCTAGGGTCACATCCCCGCTCTGGCTGCGGGAGAGGGCGTAGAGGCCTTC
GTCCCACGGTGGGGTAGGGAGAGCGATCCGCCGCTTCAGAGCTGGGTGGGGTCGCATCCCCAGC
TCACCGGGCGGGCGAGCAGGCCTGCGCCGGTGCATCTGTAACATCTTCTCACATCATGGCTGCC
AAAGCTGTAGCAAACACAATGCGGACGTCACTGGGACCAAACGGGCTGGACAAGATGATGGTTG
ATAAGGATGGCGATGTGACTATAACAAACGATGGTGCCACCATTCTAAGCATGATGGATGTCGA
TCATCAGATTGCCAAGCTGATGGTTGAACTGTCCAAATCCCAGGATGATGAAATTGGAGATGGG
ACCACAGGAGTGGTTGTCTTGGCTGGGGCCTTGTTGGAAGAAGCTGAACAGCTGCTGGACCGAG
GCATCCACCCAATCAGAATTGCTGATGGCTACGAGCAGGCTGCCCGAATTGCAATACAACACCT
GGACAAGATCAGCGATAAAGTGCTTGTCGACATAAACAACCCTGAACCTCTGATTCAGACTGCA
AAAACCACGCTGGGCTCCAAAGTGATTAACAGCTGTCACCGACAGATGGCTGAGATCGCCGTGA
ATGCCGTCCTCACGGTGGCAGATATGGAGCGGAGAGATGTTGACTTTGAGCTCATTAAAGTGGA
AGGCAAAGTAGGTGGGCGGCTGGAAGACACCAAGCTCATAAAGGGTGTGATCGTTGACAAGGAC
TTCAGCCACCCACAGATGCCGAAAAAAGTGGTAGATGCTAAGATTGCGATTCTCACGTGTCCAT
TTGAGCCACCTAAACCTAAGACAAAGCACAAGCTGGATGTCATGTCTGTGGAGGACTACAAAGC
CCTGCAGAAGTACGAAAAGGAGAAGTTTGAAGAGATGATTAAGCAGATTAAAGAAACTGGTGCT
AACCTAGCTATTTGCCAGTGGGGCTTTGACGATGAAGCCAATCACTTACTTCTTCAGAACGGCC
TACCTGCAGTCCGCTGGGTAGGGGGACCTGAGATTGAGCTGATCGCCATTGCAACAGGAGGACG
GATTGTCCCACGGTTCTCAGAGCTCACCTCTGAGAAGCTGGGCTTTGCTGGTGTGGTGCAGGAG
ATCTCCTTTGGCACTACAAAAGACAAAATGCTGGTTATCGAGAAGTGTAAGAACTCTAGAGCTG
TGACCATTTTCATCAGAGGAGGAAACAAGATGATCATAGAAGAAGCAAAACGATCTCTCCATGA
TGCCCTGTGTGTCATCCGGAACCTCATCCGTGACAACCGTGTTGTGTATGGAGGAGGGGCAGCC
GAAATATCCTGCGCCCTGGCAGTCAGCCAAGAGGCAGACAAGTGCCCAACTTTGGAACAGTATG
CCATGAGAGCTTTTGCAGATGCCTTGGAGGTCATCCCCATGGCCCTTTCAGAAAATAGTGGCAT
GAATCCCATTCAGACCATGACTGAAGTTCGAGCCAGACAGGTGAAGGAGTCTAACCCTGCCCTG
GGGATTGACTGTTTGCACAAGGGCAGTAACGATATGCAGTATCAGCATGTCATAGAAACCTTGA
TTGGCAAAAAGCAGCAGATCTCTCTTGCCACCCAGATGGTTAGGATGATTCTGAAGATTGATGA
CATCCGTAAGCCTGGAGAATCTGAAGAATAAACTGTACCATTTACCACTGTGACTAAATAAAGG
GTGTGTCTGTTGTGCTGCGTCTGCAGTTACTGCTGGTCCTCTCACAGCTGTAGATGCTGGAATA
AAAGCAGCTGTCTGGTAACTGCTTCCACTTAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_007637 ⟹ NP_031663

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	15	31,590,946 - 31,601,992 (-)	NCBI
GRCm38	15	31,590,800 - 31,601,846 (-)	NCBI
MGSCv37	15	31,520,639 - 31,531,559 (-)	RGD
Celera	15	32,284,699 - 32,295,619 (-)	RGD
cM Map	15		ENTREZGENE

Sequence:

show sequence

CTGTTGAAAAGTAAGTCGCGGGGTCTGCACTGCGCATGCGCGGGATTCTGCGTCCTCTCGCGAG
AGGGAGGTGCGGTGTGTCTCTCTTCCCGAGTGGTCCCCGCTGGTTACTGGAGGAGCGCTCGTTC
TAGTTCGTCCACCATGGCGTCCGTGGGGACCCTCGCCTTCGATGAGTATGGGCGCCCCTTTCTC
ATTATCAAGGACCAAGATCGCAAGTCCCGTCTCATGGGGCTTGAGGCCCTCAAGTCTCACATCA
TGGCTGCCAAAGCTGTAGCAAACACAATGCGGACGTCACTGGGACCAAACGGGCTGGACAAGAT
GATGGTTGATAAGGATGGCGATGTGACTATAACAAACGATGGTGCCACCATTCTAAGCATGATG
GATGTCGATCATCAGATTGCCAAGCTGATGGTTGAACTGTCCAAATCCCAGGATGATGAAATTG
GAGATGGGACCACAGGAGTGGTTGTCTTGGCTGGGGCCTTGTTGGAAGAAGCTGAACAGCTGCT
GGACCGAGGCATCCACCCAATCAGAATTGCTGATGGCTACGAGCAGGCTGCCCGAATTGCAATA
CAACACCTGGACAAGATCAGCGATAAAGTGCTTGTCGACATAAACAACCCTGAACCTCTGATTC
AGACTGCAAAAACCACGCTGGGCTCCAAAGTGATTAACAGCTGTCACCGACAGATGGCTGAGAT
CGCCGTGAATGCCGTCCTCACGGTGGCAGATATGGAGCGGAGAGATGTTGACTTTGAGCTCATT
AAAGTGGAAGGCAAAGTAGGTGGGCGGCTGGAAGACACCAAGCTCATAAAGGGTGTGATCGTTG
ACAAGGACTTCAGCCACCCACAGATGCCGAAAAAAGTGGTAGATGCTAAGATTGCGATTCTCAC
GTGTCCATTTGAGCCACCTAAACCTAAGACAAAGCACAAGCTGGATGTCATGTCTGTGGAGGAC
TACAAAGCCCTGCAGAAGTACGAAAAGGAGAAGTTTGAAGAGATGATTAAGCAGATTAAAGAAA
CTGGTGCTAACCTAGCTATTTGCCAGTGGGGCTTTGACGATGAAGCCAATCACTTACTTCTTCA
GAACGGCCTACCTGCAGTCCGCTGGGTAGGGGGACCTGAGATTGAGCTGATCGCCATTGCAACA
GGAGGACGGATTGTCCCACGGTTCTCAGAGCTCACCTCTGAGAAGCTGGGCTTTGCTGGTGTGG
TGCAGGAGATCTCCTTTGGCACTACAAAAGACAAAATGCTGGTTATCGAGAAGTGTAAGAACTC
TAGAGCTGTGACCATTTTCATCAGAGGAGGAAACAAGATGATCATAGAAGAAGCAAAACGATCT
CTCCATGATGCCCTGTGTGTCATCCGGAACCTCATCCGTGACAACCGTGTTGTGTATGGAGGAG
GGGCAGCCGAAATATCCTGCGCCCTGGCAGTCAGCCAAGAGGCAGACAAGTGCCCAACTTTGGA
ACAGTATGCCATGAGAGCTTTTGCAGATGCCTTGGAGGTCATCCCCATGGCCCTTTCAGAAAAT
AGTGGCATGAATCCCATTCAGACCATGACTGAAGTTCGAGCCAGACAGGTGAAGGAGTCTAACC
CTGCCCTGGGGATTGACTGTTTGCACAAGGGCAGTAACGATATGCAGTATCAGCATGTCATAGA
AACCTTGATTGGCAAAAAGCAGCAGATCTCTCTTGCCACCCAGATGGTTAGGATGATTCTGAAG
ATTGATGACATCCGTAAGCCTGGAGAATCTGAAGAATAAACTGTACCATTTACCACTGTGACTA
AATAAAGGGTGTGTCTGTTGTGCTGCGTCTGCAGTTACTGCTGGTCCTCTCACAGCTGTAGATG
CTGGAATAAAAGCAGCTGTCTGGTAACTGCTTCCACTTAAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001334964	(Get FASTA)	NCBI Sequence Viewer
	NP_031663	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH94427	(Get FASTA)	NCBI Sequence Viewer
	BAA81876	(Get FASTA)	NCBI Sequence Viewer
	BAC40194	(Get FASTA)	NCBI Sequence Viewer
	BAC97866	(Get FASTA)	NCBI Sequence Viewer
	BAE21891	(Get FASTA)	NCBI Sequence Viewer
	BAE23007	(Get FASTA)	NCBI Sequence Viewer
	BAE26441	(Get FASTA)	NCBI Sequence Viewer
	BAE27146	(Get FASTA)	NCBI Sequence Viewer
	BAE27159	(Get FASTA)	NCBI Sequence Viewer
	BAE29518	(Get FASTA)	NCBI Sequence Viewer
	BAE32250	(Get FASTA)	NCBI Sequence Viewer
	BAE39906	(Get FASTA)	NCBI Sequence Viewer
	CAA83430	(Get FASTA)	NCBI Sequence Viewer
	EDL08877	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000022842
	ENSMUSP00000022842.9
GenBank Protein	P80316	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_031663 ⟸ NM_007637
- Peptide Label:	isoform 1
- UniProtKB:	Q542K3 (UniProtKB/Swiss-Prot), Q3UWA9 (UniProtKB/Swiss-Prot), Q3UJK9 (UniProtKB/Swiss-Prot), Q3UCU4 (UniProtKB/Swiss-Prot), Q3U530 (UniProtKB/Swiss-Prot), Q3TIE0 (UniProtKB/Swiss-Prot), Q6ZQJ1 (UniProtKB/Swiss-Prot), P80316 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MASVGTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDK DGDVTITNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGI HPIRIADGYEQAARIAIQHLDKISDKVLVDINNPEPLIQTAKTTLGSKVINSCHRQMAEIAVNA VLTVADMERRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKKVVDAKIAILTCPFE PPKPKTKHKLDVMSVEDYKALQKYEKEKFEEMIKQIKETGANLAICQWGFDDEANHLLLQNGLP AVRWVGGPEIELIAIATGGRIVPRFSELTSEKLGFAGVVQEISFGTTKDKMLVIEKCKNSRAVT IFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAM RAFADALEVIPMALSENSGMNPIQTMTEVRARQVKESNPALGIDCLHKGSNDMQYQHVIETLIG KKQQISLATQMVRMILKIDDIRKPGESEE hide sequence

RefSeq Acc Id:	NP_001334964 ⟸ NM_001348035
- Peptide Label:	isoform 2
- UniProtKB:	P80316 (UniProtKB/Swiss-Prot)

Ensembl Acc Id:

ENSMUSP00000022842 ⟸ ENSMUST00000022842

Ensembl Acc Id:

ENSMUSP00000125566 ⟸ ENSMUST00000161266

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P80316-F1-model_v2	AlphaFold	P80316	1-541	view protein structure

Promoters

RGD ID:

6847176

Promoter ID:

MM_ACW:17707

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

Kidney, Lung

Transcripts:

CCT5.GSEP07-UNSPLICED

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	15	31,521,876 - 31,522,376 (-)	MPROMDB

RGD ID:

6825850

Promoter ID:

MM_KWN:18191

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

BoneMarrow_2Hour, Brain, Kidney, Liver, Lung, Spleen

Transcripts:

OTTMUST00000076236

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	15	31,522,356 - 31,523,792 (-)	MPROMDB

RGD ID:

6825849

Promoter ID:

MM_KWN:18192

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

Brain, Kidney, Liver, Spleen

Transcripts:

OTTMUST00000076235

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	15	31,523,946 - 31,524,762 (-)	MPROMDB

RGD ID:

6825656

Promoter ID:

MM_KWN:18193

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

NM_026546, OTTMUST00000076216, OTTMUST00000076217, OTTMUST00000076218, OTTMUST00000076239, UC007VKL.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	15	31,531,396 - 31,532,012 (+)	MPROMDB

RGD ID:

8683530

Promoter ID:

EPDNEW_M19794

Type:

initiation region

Name:

Cct5_1

Description:

Mus musculus chaperonin containing Tcp1, subunit 5 , transcriptvariant 1, mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	15	31,601,761 - 31,601,821	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:107185	AgrOrtholog
Ensembl Genes	ENSMUSG00000022234	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000022842	ENTREZGENE
	ENSMUST00000022842.16	UniProtKB/Swiss-Prot
Gene3D-CATH	1.10.560.10	UniProtKB/Swiss-Prot
	3.30.260.10	UniProtKB/Swiss-Prot
	3.50.7.10	UniProtKB/Swiss-Prot
InterPro	Chap_CCT_epsi	UniProtKB/Swiss-Prot
	Chaperone_TCP-1	UniProtKB/Swiss-Prot
	Chaperonin_TCP-1_CS	UniProtKB/Swiss-Prot
	Cpn60/TCP-1	UniProtKB/Swiss-Prot
	GroEL-like_apical_dom_sf	UniProtKB/Swiss-Prot
	GROEL-like_equatorial_sf	UniProtKB/Swiss-Prot
	TCP-1-like_intermed_sf	UniProtKB/Swiss-Prot
	TCP-1_chaperonin	UniProtKB/Swiss-Prot
	thermosome_alpha	UniProtKB/Swiss-Prot
KEGG Report	mmu:12465	UniProtKB/Swiss-Prot
MGD	MGI:107185	ENTREZGENE
NCBI Gene	12465	ENTREZGENE
PANTHER	PTHR11353	UniProtKB/Swiss-Prot
Pfam	Cpn60_TCP1	UniProtKB/Swiss-Prot
PhenoGen	Cct5	PhenoGen
PRINTS	TCOMPLEXTCP1	UniProtKB/Swiss-Prot
PROSITE	TCP1_1	UniProtKB/Swiss-Prot
	TCP1_2	UniProtKB/Swiss-Prot
	TCP1_3	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF48592	UniProtKB/Swiss-Prot
	SSF52029	UniProtKB/Swiss-Prot
	SSF54849	UniProtKB/Swiss-Prot
UniProt	E0CZA1_MOUSE	UniProtKB/TrEMBL
	P80316	ENTREZGENE
	Q3TIE0	ENTREZGENE
	Q3U530	ENTREZGENE
	Q3UCU4	ENTREZGENE
	Q3UJK9	ENTREZGENE
	Q3UWA9	ENTREZGENE
	Q542K3	ENTREZGENE
	Q6ZQJ1	ENTREZGENE
	TCPE_MOUSE	UniProtKB/Swiss-Prot
UniProt Secondary	Q3TIE0	UniProtKB/Swiss-Prot
	Q3U530	UniProtKB/Swiss-Prot
	Q3UCU4	UniProtKB/Swiss-Prot
	Q3UJK9	UniProtKB/Swiss-Prot
	Q3UWA9	UniProtKB/Swiss-Prot
	Q542K3	UniProtKB/Swiss-Prot
	Q6ZQJ1	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2023-06-27	Cct5	chaperonin containing TCP1 subunit 5	Cct5	chaperonin containing Tcp1, subunit 5 (epsilon)	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Mammalian Phenotype

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Mammalian Phenotype