Tmem63c (transmembrane protein 63c) - Rat Genome Database

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Gene: Tmem63c (transmembrane protein 63c) Mus musculus
Analyze
Symbol: Tmem63c
Name: transmembrane protein 63c
RGD ID: 1551588
MGI Page MGI
Description: Enables osmolarity-sensing monoatomic cation channel activity. Predicted to be involved in glomerular filtration and monoatomic cation transport. Predicted to act upstream of or within monoatomic ion transmembrane transport. Located in plasma membrane. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 87. Orthologous to human TMEM63C (transmembrane protein 63C).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4932420N09; 9330187M14Rik; calcium permeable stress-gated cation channel 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391287,068,114 - 87,138,598 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1287,068,114 - 87,136,817 (+)EnsemblGRCm39 Ensembl
GRCm381287,021,340 - 87,091,824 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1287,021,340 - 87,090,043 (+)EnsemblGRCm38mm10GRCm38
MGSCv371288,367,514 - 88,430,991 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361287,915,667 - 87,979,144 (+)NCBIMGSCv36mm8
Celera1288,490,107 - 88,554,534 (+)NCBICelera
Cytogenetic Map12D2NCBI
cM Map1241.21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)
plasma membrane  (IBA,IDA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Analysis of the genomic architecture of a complex trait locus in hypertensive rat models links Tmem63c to kidney damage. Schulz A, etal., Elife. 2019 Mar 22;8. pii: 42068. doi: 10.7554/eLife.42068.
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073   PMID:21267068   PMID:21677750   PMID:21873635  
PMID:27045885   PMID:37945568   PMID:38355793  


Genomics

Comparative Map Data
Tmem63c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391287,068,114 - 87,138,598 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1287,068,114 - 87,136,817 (+)EnsemblGRCm39 Ensembl
GRCm381287,021,340 - 87,091,824 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1287,021,340 - 87,090,043 (+)EnsemblGRCm38mm10GRCm38
MGSCv371288,367,514 - 88,430,991 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361287,915,667 - 87,979,144 (+)NCBIMGSCv36mm8
Celera1288,490,107 - 88,554,534 (+)NCBICelera
Cytogenetic Map12D2NCBI
cM Map1241.21NCBI
TMEM63C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381477,181,798 - 77,259,495 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1477,116,568 - 77,259,495 (+)EnsemblGRCh38hg38GRCh38
GRCh371477,648,141 - 77,725,838 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361476,717,923 - 76,795,591 (+)NCBINCBI36Build 36hg18NCBI36
Celera1457,686,703 - 57,764,477 (+)NCBICelera
Cytogenetic Map14q24.3NCBI
HuRef1457,815,884 - 57,892,329 (+)NCBIHuRef
CHM1_11477,587,465 - 77,665,362 (+)NCBICHM1_1
T2T-CHM13v2.01471,391,595 - 71,468,802 (+)NCBIT2T-CHM13v2.0
Tmem63c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86112,398,308 - 112,469,732 (+)NCBIGRCr8
mRatBN7.26106,667,389 - 106,738,778 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6106,672,934 - 106,736,990 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6106,840,002 - 106,904,597 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06107,138,859 - 107,203,436 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06106,508,502 - 106,573,112 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06111,044,099 - 111,120,659 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6111,049,559 - 111,120,799 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06120,334,031 - 120,406,641 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46111,159,623 - 111,223,801 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16111,189,606 - 111,226,710 (+)NCBI
Celera6104,494,900 - 104,558,453 (+)NCBICelera
Cytogenetic Map6q31NCBI
Tmem63c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554381,090,847 - 1,156,166 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554381,091,324 - 1,155,878 (+)NCBIChiLan1.0ChiLan1.0
TMEM63C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21578,265,213 - 78,343,158 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11477,481,715 - 77,563,149 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01457,734,857 - 57,812,529 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11476,936,751 - 77,014,318 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1476,974,416 - 77,011,555 (+)Ensemblpanpan1.1panPan2
TMEM63C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1850,000,306 - 50,076,457 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl850,020,823 - 50,074,060 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha849,687,784 - 49,764,299 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0850,233,518 - 50,310,109 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl850,240,047 - 50,310,107 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1849,896,215 - 49,972,789 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0849,919,478 - 49,995,813 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0850,317,684 - 50,394,015 (+)NCBIUU_Cfam_GSD_1.0
Tmem63c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864025,980,157 - 26,051,461 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364886,034,618 - 6,086,207 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364886,050,368 - 6,086,881 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM63C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7100,263,549 - 100,334,292 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17100,262,732 - 100,334,300 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27106,289,466 - 106,341,501 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM63C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12454,428,903 - 54,504,276 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2454,360,369 - 54,505,179 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605342,630,096 - 42,705,192 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem63c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473424,648,563 - 24,714,507 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473424,649,895 - 24,745,693 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tmem63c
1937 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2159
Count of miRNA genes:644
Interacting mature miRNAs:825
Transcripts:ENSMUST00000110187, ENSMUST00000131878, ENSMUST00000146292, ENSMUST00000154801, ENSMUST00000156162
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
1357479Splwt1_mspleen weight 1 (mouse)Not determined124169317590887526Mouse
1357749Vtbt13_mvertebral trabecular bone trait 13 (mouse)Not determined125313200287132145Mouse
27226728Tibl20_mtibia length 20, 16 week (mouse)125914678693866774Mouse
27226776Tibl6_mtibia length 6, 5 week (mouse)126064678692666774Mouse
10043948Pbft6_mpercent body fat 6 (mouse)Not determined126120542795205427Mouse
1301476Pbwg12_mpostnatal body weight growth 12 (mouse)Not determined126204016496040364Mouse
27226797Scvln19_msacral vertebrae length 2, 16 week (mouse)126214678699466259Mouse
10043895Bw20_mbody weight QTL 20 (mouse)Not determined126230825296308252Mouse
1301046Par3_mpulmonary adenoma resistance 3 (mouse)Not determined126395670897956883Mouse
1301337Cdcs8_mcytokine deficiency colitis susceptibility 8 (mouse)Not determined126468908398689229Mouse
1300633Cdcs7_mcytokine deficiency colitis susceptibility 7 (mouse)Not determined126468908398689229Mouse
14746976Manh73_mmandible shape 73 (mouse)126585713199857131Mouse
27226771Tibl14_mtibia length 14, 10 week (mouse)126834677498766259Mouse
27226793Feml10_mfemur length 10, 5 week (mouse)1268346774113363620Mouse
4141738Tgq23_mtriglyceride QTL 23 (mouse)Not determined72112877106112877Mouse
1301926Adip6_madiposity 6 (mouse)Not determined1273887422107887526Mouse
1301689Skull18_mskull morphology 18 (mouse)Not determined1273887422107887526Mouse
13524842Ppiq10a_mprepulse inhibition QTL 10a (mouse)1277512220111512220Mouse
4141610Tailaq1_mtail length adjusted QTL 1 (mouse)Not determined80956708113383533Mouse
4142401Egq10_mearly growth QTL 10 (mouse)Not determined80956708113383533Mouse
4141335W6q10_mweight 6 weeks QTL 10 (mouse)Not determined80956708113383533Mouse
39128213Lwq23_mliver weight QTL 10 (mouse)1280956708113383533Mouse
13524849Ppiq11a_mprepulse inhibition QTL 11a (mouse)1280989143114989143Mouse
25823169Hrsq8_mhost response to SARS QTL 8, log titer (mouse)1281696245108495368Mouse
13524846Ppiq11_mprepulse inhibition QTL 11 (mouse)1282666396116666396Mouse
1301492Dbsty3_mdiabesity 3 (mouse)Not determined1283532075117532224Mouse
1301879Insq10_minsulin QTL 10 (mouse)Not determined1283532075117532224Mouse
1300883Ath21_matherosclerosis 21 (mouse)Not determined1285961579119961683Mouse
10412156Nociq3_mnociceptive sensitivity inflammatory QTL 3 (mouse)Not determined1286396075114831653Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001361704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001361705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_172583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_155207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006515717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006515718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006515720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006515724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006515725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006515727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011244081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011244084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011244085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017315036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003950037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC132609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC153147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK034410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK043536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC056936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC057088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY239104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN459916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000110187   ⟹   ENSMUSP00000105816
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1287,073,338 - 87,136,807 (+)Ensembl
GRCm38.p6 Ensembl1287,026,564 - 87,090,033 (+)Ensembl
RefSeq Acc Id: ENSMUST00000131878   ⟹   ENSMUSP00000117023
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1287,085,213 - 87,136,815 (+)Ensembl
GRCm38.p6 Ensembl1287,038,439 - 87,090,041 (+)Ensembl
RefSeq Acc Id: ENSMUST00000146292   ⟹   ENSMUSP00000119872
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1287,073,066 - 87,136,812 (+)Ensembl
GRCm38.p6 Ensembl1287,026,292 - 87,090,038 (+)Ensembl
RefSeq Acc Id: ENSMUST00000154801   ⟹   ENSMUSP00000119898
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1287,068,114 - 87,136,817 (+)Ensembl
GRCm38.p6 Ensembl1287,021,340 - 87,090,043 (+)Ensembl
RefSeq Acc Id: ENSMUST00000156162   ⟹   ENSMUSP00000122346
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1287,073,390 - 87,104,444 (+)Ensembl
GRCm38.p6 Ensembl1287,026,616 - 87,057,670 (+)Ensembl
RefSeq Acc Id: NM_001361704   ⟹   NP_001348633
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391287,073,066 - 87,138,596 (+)NCBI
GRCm381287,026,292 - 87,091,822 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001361705   ⟹   NP_001348634
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391287,073,066 - 87,138,596 (+)NCBI
GRCm381287,026,292 - 87,091,822 (+)NCBI
Sequence:
RefSeq Acc Id: NM_172583   ⟹   NP_766171
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391287,073,066 - 87,138,596 (+)NCBI
GRCm381287,026,292 - 87,091,822 (+)NCBI
MGSCv371288,367,514 - 88,430,991 (+)RGD
Celera1288,490,107 - 88,554,534 (+)RGD
cM Map12 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_155207
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391287,068,114 - 87,138,596 (+)NCBI
GRCm381287,021,340 - 87,091,822 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006515717   ⟹   XP_006515780
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391287,073,372 - 87,136,871 (+)NCBI
GRCm381287,026,598 - 87,091,824 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006515718   ⟹   XP_006515781
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391287,073,064 - 87,136,871 (+)NCBI
GRCm381287,026,290 - 87,091,824 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006515720   ⟹   XP_006515783
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391287,068,118 - 87,136,871 (+)NCBI
GRCm381287,021,344 - 87,091,824 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006515724   ⟹   XP_006515787
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391287,073,065 - 87,136,871 (+)NCBI
GRCm381287,026,290 - 87,091,824 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006515725   ⟹   XP_006515788
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391287,073,065 - 87,136,871 (+)NCBI
GRCm381287,026,290 - 87,091,824 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006515727   ⟹   XP_006515790
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391287,073,066 - 87,136,871 (+)NCBI
GRCm381287,061,521 - 87,091,824 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011244081   ⟹   XP_011242383
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391287,073,064 - 87,136,871 (+)NCBI
GRCm381287,026,290 - 87,091,824 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011244084   ⟹   XP_011242386
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391287,073,064 - 87,136,871 (+)NCBI
GRCm381287,026,290 - 87,091,824 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011244085   ⟹   XP_011242387
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391287,073,064 - 87,136,871 (+)NCBI
GRCm381287,026,290 - 87,091,824 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017315036   ⟹   XP_017170525
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391287,068,118 - 87,135,993 (+)NCBI
GRCm381287,021,344 - 87,089,219 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030246662   ⟹   XP_030102522
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391287,073,064 - 87,136,871 (+)NCBI
GRCm381287,026,290 - 87,091,824 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030246664   ⟹   XP_030102524
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391287,073,064 - 87,135,993 (+)NCBI
GRCm381287,026,289 - 87,089,219 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036157336   ⟹   XP_036013229
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391287,073,064 - 87,138,598 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036157337   ⟹   XP_036013230
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391287,073,064 - 87,138,598 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003950037
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391287,073,062 - 87,138,596 (+)NCBI
GRCm381287,026,288 - 87,091,822 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001348633 (Get FASTA)   NCBI Sequence Viewer  
  NP_001348634 (Get FASTA)   NCBI Sequence Viewer  
  NP_766171 (Get FASTA)   NCBI Sequence Viewer  
  XP_006515780 (Get FASTA)   NCBI Sequence Viewer  
  XP_006515781 (Get FASTA)   NCBI Sequence Viewer  
  XP_006515783 (Get FASTA)   NCBI Sequence Viewer  
  XP_006515787 (Get FASTA)   NCBI Sequence Viewer  
  XP_006515788 (Get FASTA)   NCBI Sequence Viewer  
  XP_006515790 (Get FASTA)   NCBI Sequence Viewer  
  XP_011242383 (Get FASTA)   NCBI Sequence Viewer  
  XP_011242386 (Get FASTA)   NCBI Sequence Viewer  
  XP_011242387 (Get FASTA)   NCBI Sequence Viewer  
  XP_017170525 (Get FASTA)   NCBI Sequence Viewer  
  XP_030102522 (Get FASTA)   NCBI Sequence Viewer  
  XP_030102524 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013229 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013230 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH56936 (Get FASTA)   NCBI Sequence Viewer  
  AAH57088 (Get FASTA)   NCBI Sequence Viewer  
  BAC28698 (Get FASTA)   NCBI Sequence Viewer  
  EDL02917 (Get FASTA)   NCBI Sequence Viewer  
  EDL02918 (Get FASTA)   NCBI Sequence Viewer  
  EDL02919 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000105816
  ENSMUSP00000105816.2
  ENSMUSP00000117023
  ENSMUSP00000117023.2
  ENSMUSP00000119872
  ENSMUSP00000119872.2
  ENSMUSP00000119898.2
  ENSMUSP00000122346.2
GenBank Protein Q8CBX0 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_766171   ⟸   NM_172583
- Peptide Label: isoform 1
- UniProtKB: Q8CBX0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006515783   ⟸   XM_006515720
- Peptide Label: isoform X1
- UniProtKB: Q8CBX0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006515781   ⟸   XM_006515718
- Peptide Label: isoform X1
- UniProtKB: Q8CBX0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006515788   ⟸   XM_006515725
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006515787   ⟸   XM_006515724
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006515780   ⟸   XM_006515717
- Peptide Label: isoform X1
- UniProtKB: Q8CBX0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006515790   ⟸   XM_006515727
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_011242383   ⟸   XM_011244081
- Peptide Label: isoform X1
- UniProtKB: Q8CBX0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011242387   ⟸   XM_011244085
- Peptide Label: isoform X1
- UniProtKB: Q8CBX0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011242386   ⟸   XM_011244084
- Peptide Label: isoform X1
- UniProtKB: Q8CBX0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017170525   ⟸   XM_017315036
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_030102524   ⟸   XM_030246664
- Peptide Label: isoform X3
RefSeq Acc Id: XP_030102522   ⟸   XM_030246662
- Peptide Label: isoform X1
- UniProtKB: Q8CBX0 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001348633   ⟸   NM_001361704
- Peptide Label: isoform 1
- UniProtKB: Q8CBX0 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001348634   ⟸   NM_001361705
- Peptide Label: isoform 2
RefSeq Acc Id: ENSMUSP00000105816   ⟸   ENSMUST00000110187
RefSeq Acc Id: ENSMUSP00000119872   ⟸   ENSMUST00000146292
RefSeq Acc Id: ENSMUSP00000117023   ⟸   ENSMUST00000131878
RefSeq Acc Id: ENSMUSP00000119898   ⟸   ENSMUST00000154801
RefSeq Acc Id: ENSMUSP00000122346   ⟸   ENSMUST00000156162
RefSeq Acc Id: XP_036013229   ⟸   XM_036157336
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036013230   ⟸   XM_036157337
- Peptide Label: isoform X5
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8CBX0-F1-model_v2 AlphaFold Q8CBX0 1-802 view protein structure

Promoters
RGD ID:8678906
Promoter ID:EPDNEW_M17467
Type:initiation region
Name:Tmem63c_2
Description:Mus musculus transmembrane protein 63c , transcript variant 3,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M17468  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381287,021,353 - 87,021,413EPDNEW
RGD ID:8678874
Promoter ID:EPDNEW_M17468
Type:multiple initiation site
Name:Tmem63c_1
Description:Mus musculus transmembrane protein 63c , transcript variant 3,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M17467  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381287,026,511 - 87,026,571EPDNEW
RGD ID:6823475
Promoter ID:MM_KWN:12244
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   ES_Cell
Transcripts:NM_172583,   OTTMUST00000063775,   UC007OIH.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361288,367,146 - 88,367,646 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2444386 AgrOrtholog
Ensembl Genes ENSMUSG00000034145 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000110187 ENTREZGENE
  ENSMUST00000110187.8 UniProtKB/Swiss-Prot
  ENSMUST00000131878 ENTREZGENE
  ENSMUST00000131878.2 UniProtKB/Swiss-Prot
  ENSMUST00000146292 ENTREZGENE
  ENSMUST00000146292.8 UniProtKB/Swiss-Prot
  ENSMUST00000154801.8 UniProtKB/TrEMBL
  ENSMUST00000156162.8 UniProtKB/TrEMBL
InterPro Csc1-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Csc1_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PHM7_cyt UniProtKB/Swiss-Prot
  RSN1_7TM UniProtKB/Swiss-Prot
KEGG Report mmu:217733 UniProtKB/Swiss-Prot
MGD MGI:2444386 ENTREZGENE
NCBI Gene 217733 ENTREZGENE
PANTHER CALCIUM PERMEABLE STRESS-GATED CATION CHANNEL 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR13018 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PHM7_cyt UniProtKB/Swiss-Prot
  RSN1_7TM UniProtKB/Swiss-Prot
  RSN1_TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tmem63c PhenoGen
UniProt CSC1_MOUSE UniProtKB/Swiss-Prot
  D3Z6R7_MOUSE UniProtKB/TrEMBL
  D6RI74_MOUSE UniProtKB/TrEMBL
  Q8CBX0 ENTREZGENE