Chd6 (chromodomain helicase DNA binding protein 6) - Rat Genome Database

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Gene: Chd6 (chromodomain helicase DNA binding protein 6) Mus musculus
Analyze
Symbol: Chd6
Name: chromodomain helicase DNA binding protein 6
RGD ID: 1551542
MGI Page MGI
Description: Predicted to enable several functions, including ATP hydrolysis activity; ATP-dependent chromatin remodeler activity; and transcription coregulator binding activity. Predicted to be involved in cell redox homeostasis; chromatin remodeling; and positive regulation of transcription by RNA polymerase II. Predicted to be located in chromatin and nucleoplasm. Predicted to be active in nucleus. Is expressed in cerebral cortex intermediate zone; cerebral cortex ventricular layer; and cortical plate. Orthologous to human CHD6 (chromodomain helicase DNA binding protein 6).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: 5430439G14Rik; 6330406J24Rik; ATP-dependent helicase CHD6; CHD-6; chromodomain-helicase-DNA-binding protein 6
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm8291  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392160,788,898 - 160,951,006 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2160,788,898 - 160,950,995 (-)EnsemblGRCm39 Ensembl
GRCm382160,946,978 - 161,109,086 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2160,946,978 - 161,109,075 (-)EnsemblGRCm38mm10GRCm38
MGSCv372160,772,714 - 160,934,792 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362160,638,419 - 160,800,497 (-)NCBIMGSCv36mm8
Celera2166,877,653 - 167,040,009 (-)NCBICelera
Cytogenetic Map2H2NCBI
cM Map280.98NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chromatin  (IBA)
nucleoplasm  (ISO,ISS)
nucleus  (IBA)

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. The Nrf2 regulatory network provides an interface between redox and intermediary metabolism. Hayes JD and Dinkova-Kostova AT, Trends Biochem Sci. 2014 Apr;39(4):199-218. doi: 10.1016/j.tibs.2014.02.002. Epub 2014 Mar 16.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10725249   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:12693553   PMID:12904583   PMID:14610273   PMID:14691545   PMID:16141072   PMID:16141073  
PMID:17027977   PMID:18799693   PMID:20111866   PMID:21267068   PMID:21677750   PMID:21873635   PMID:23408615   PMID:23954449   PMID:30186101   PMID:31040226   PMID:32325033   PMID:33554859  
PMID:34321999   PMID:38355793  


Genomics

Comparative Map Data
Chd6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392160,788,898 - 160,951,006 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2160,788,898 - 160,950,995 (-)EnsemblGRCm39 Ensembl
GRCm382160,946,978 - 161,109,086 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2160,946,978 - 161,109,075 (-)EnsemblGRCm38mm10GRCm38
MGSCv372160,772,714 - 160,934,792 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362160,638,419 - 160,800,497 (-)NCBIMGSCv36mm8
Celera2166,877,653 - 167,040,009 (-)NCBICelera
Cytogenetic Map2H2NCBI
cM Map280.98NCBI
CHD6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382041,402,083 - 41,618,377 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2041,402,083 - 41,618,384 (-)EnsemblGRCh38hg38GRCh38
GRCh372040,030,723 - 40,247,016 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362039,464,584 - 39,680,547 (-)NCBINCBI36Build 36hg18NCBI36
Build 342039,464,583 - 39,680,547NCBI
Celera2036,741,838 - 36,957,790 (-)NCBICelera
Cytogenetic Map20q12NCBI
HuRef2036,768,458 - 36,984,731 (-)NCBIHuRef
CHM1_12039,935,021 - 40,151,300 (-)NCBICHM1_1
T2T-CHM13v2.02043,133,884 - 43,350,249 (-)NCBIT2T-CHM13v2.0
Chd6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83170,016,204 - 170,177,480 (-)NCBIGRCr8
mRatBN7.23149,596,509 - 149,757,765 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3149,596,509 - 149,757,755 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3153,409,455 - 153,571,162 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03161,908,858 - 162,070,560 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03159,648,665 - 159,809,906 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03156,937,746 - 157,099,328 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3156,937,733 - 157,099,306 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03163,164,938 - 163,324,764 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43151,741,389 - 151,924,668 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13151,647,823 - 151,830,771 (-)NCBI
Celera3148,269,027 - 148,429,163 (-)NCBICelera
Cytogenetic Map3q42NCBI
Chd6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544515,360,025 - 15,560,988 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544515,360,074 - 15,576,410 (+)NCBIChiLan1.0ChiLan1.0
CHD6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22147,144,211 - 47,354,354 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12047,137,310 - 47,347,383 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02037,744,012 - 37,953,593 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12038,839,685 - 38,988,719 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2038,839,685 - 38,999,501 (-)Ensemblpanpan1.1panPan2
CHD6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12429,397,320 - 29,601,206 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2429,397,306 - 29,601,350 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2429,042,568 - 29,246,480 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02430,102,193 - 30,305,887 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2430,102,811 - 30,306,032 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12429,370,977 - 29,574,934 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02429,474,474 - 29,678,500 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02429,971,008 - 30,174,849 (-)NCBIUU_Cfam_GSD_1.0
Chd6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640178,354,920 - 178,570,711 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936561178,700 - 394,842 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936561238,307 - 394,082 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHD6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1744,048,098 - 44,265,431 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11744,048,056 - 44,265,472 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21749,502,246 - 49,555,890 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CHD6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1222,163,836 - 22,373,098 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl222,223,919 - 22,373,275 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605070,981,245 - 71,189,656 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Chd6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479012,610,254 - 12,858,368 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479012,610,418 - 12,858,062 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Chd6
4097 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3392
Count of miRNA genes:888
Interacting mature miRNAs:1249
Transcripts:ENSMUST00000039782, ENSMUST00000125179, ENSMUST00000130265, ENSMUST00000134178, ENSMUST00000137152, ENSMUST00000137831, ENSMUST00000138078, ENSMUST00000143081, ENSMUST00000149866, ENSMUST00000155066, ENSMUST00000155918
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301907Rends_mrenal disease susceptibility (mouse)Not determined2135699221169699361Mouse
1301783Bhr1_mbronchial hyperresponsiveness 1 (mouse)Not determined2142593476178442452Mouse
12790983Bwq12_mbody weight QTL 12 (mouse)2148238204181755017Mouse
1301019Bmd6_mbone mineral density 6 (mouse)Not determined2151778297181755017Mouse
1558939Gnf1_mgrowth and fatness 1 (mouse)Not determined2143773445169117924Mouse
1300867Lore2_mloss of righting induced by ethanol 2 (mouse)Not determined2144515861180896594Mouse
1558917Gct8_mgranulosa cell tumorigenesis 8 (mouse)Not determined2149236907181755017Mouse
12910800Pwgrq3_mpre-weaning growth rate QTL 3 (mouse)2160611165169794802Mouse
14747002Mancz3_mmandible centroid size 3 (mouse)2152329820181755017Mouse
1300751Bdt1_mbone density traits 1 (mouse)Not determined2149988902181755017Mouse
1300622Cfld1_mcystic fibrosis lung disease 1 (mouse)Not determined2155823920181755017Mouse
12910810Pwbwq2_mpre-weaning body weight QTL 2 (mouse)2160611165169794802Mouse
10054066Bwq9_mbody weight QTL 9 (mouse)Not determined2135699221169699361Mouse
10043956Gnf5_mgrowth and fatness 5 (mouse)Not determined2135699221169699361Mouse
1558842Tailq2_mtail length QTL 2 (mouse)Not determined2151640941162737074Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265269746162518926Mouse
10412080Hylaq2_mHyperlocomotor activity related QTL 2 (mouse)Not determined2151640941164119146Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
1357862Epfq1_mepididymal fat pad weight QTL 1 (mouse)Not determined2151640941162737074Mouse
1301031Bdln3_mbody length 3 (mouse)Not determined2127664019161664118Mouse
11341717Rvfs1_mRift Valley fever susceptibility 1 (mouse)2135432544173449616Mouse
4141703Chlq13_mcirculating hormone level QTL 13 (mouse)Not determined2135699221169699361Mouse
1357484Bsbob_mBSB obesity (mouse)Not determined2143773445165665019Mouse
4142211Nilac3_mnicotine induced locomotor activity 3 (mouse)Not determined2148664893181755017Mouse
1300688Nidd2k_mNidd2 on KK-A (mouse)Not determined2158078337178442452Mouse
1558867Gnf3_mgrowth and fatness 3 (mouse)Not determined2152699221169117924Mouse
11038701Ltpr2e_mLeishmania tropica response 2e (mouse)2150212221181755017Mouse
11038702Ltpr2_mLeishmania tropica response 2 (mouse)2103095716167212356Mouse
4142450Lmr16_mleishmaniasis resistance 16 (mouse)Not determined2150212221181755017Mouse
1301085Lrnx10_mlearning-contextual 10 (mouse)Not determined2150212221181755017Mouse
11353826Bdln10_mbody length 10 (mouse)2140441482174441482Mouse
1558852Gnf2_mgrowth and fatness 2 (mouse)Not determined2152699221162197085Mouse
1300806Aod4_mautoimmune ovarian dysgenesis 4 (mouse)Not determined2145228719179228841Mouse
1357772Scfq1_msubcutaneous fat pad weight QTL 1 (mouse)Not determined2151640941162737074Mouse
1301961Bts1_mbladder tumor susceptibility 1 (mouse)Not determined2132024159166024330Mouse
1301618Bglu1_mblood glucose level 1 (mouse)Not determined2117942930174324863Mouse
27226749Femd10_mfemur midshaft diameter 10, 16 week (mouse)2124441920168241920Mouse
1302143Bwq5_mbody weight (mouse)Not determined2127664019161664118Mouse
1302013Tbbmd3_mtotal body bone mineral density 3 (mouse)Not determined2145196949179197085Mouse
12880427V25Dq3_mvitamin D inactive form serum level QTL 3 (mouse)2129341920163341920Mouse
13504830Bacsq1_mbaculum shape QTL 1 (mouse)2145716184161016184Mouse
12801456Intmrm1_mintima/media ratio modifier 1 (mouse)2142428347176428450Mouse
1357537Lith12_mlithogenic gene 12 (mouse)Not determined2156196464181755017Mouse
11049566Lmr28e_mleishmaniasis resistance 28e (mouse)2133144911167145058Mouse
12801461Intim1_mintima modifier 1 (mouse)2142428347176428450Mouse
11049567Lmr28f_mleishmaniasis resistance 28f (mouse)2133144911167145058Mouse
1301865Hdlq19_mHDL QTL 19 (mouse)Not determined2145518775179518926Mouse
12910520Scgq3_mspontaneous crescentic glomerulonephritis QTL 3 (mouse)2151709273174389124Mouse
1300846Pbwg11_mpostnatal body weight growth 11 (mouse)Not determined2138966600172966729Mouse

Markers in Region
14.MMHAP4FLE2.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382161,102,442 - 161,102,610UniSTSGRCm38
MGSCv372160,928,178 - 160,928,346UniSTSGRCm37
Celera2167,033,104 - 167,033,272UniSTS
Cytogenetic Map2H2UniSTS
Whitehead_YAC2 UniSTS
UniSTS:234564  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382161,036,664 - 161,036,878UniSTSGRCm38
MGSCv372160,862,400 - 160,862,614UniSTSGRCm37
Celera2166,967,333 - 166,967,547UniSTS
Cytogenetic Map2H2UniSTS
UniSTS:234568  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382160,949,551 - 160,949,785UniSTSGRCm38
MGSCv372160,775,287 - 160,775,521UniSTSGRCm37
Celera2166,880,226 - 166,880,460UniSTS
Cytogenetic Map2H2UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_173368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_126509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006500184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011239776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011239777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017319258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017319259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036162570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001783180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001783181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004940730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK017414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK018129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK038115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK040495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK078565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK086807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK122496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK142177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL590430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL591763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW519637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB652323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC011423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC027287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC049798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC059807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC072648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC150806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU708927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ075254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK794218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN459086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN526286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN664107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN664285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CO433513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CV559963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000039782   ⟹   ENSMUSP00000042291
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2160,788,898 - 160,950,942 (-)Ensembl
GRCm38.p6 Ensembl2160,946,978 - 161,109,022 (-)Ensembl
Ensembl Acc Id: ENSMUST00000125179
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2160,876,951 - 160,950,924 (-)Ensembl
GRCm38.p6 Ensembl2161,035,031 - 161,109,004 (-)Ensembl
Ensembl Acc Id: ENSMUST00000130265   ⟹   ENSMUSP00000117075
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2160,871,759 - 160,894,498 (-)Ensembl
GRCm38.p6 Ensembl2161,029,839 - 161,052,578 (-)Ensembl
Ensembl Acc Id: ENSMUST00000134178   ⟹   ENSMUSP00000123240
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2160,825,104 - 160,950,942 (-)Ensembl
GRCm38.p6 Ensembl2160,983,184 - 161,109,022 (-)Ensembl
Ensembl Acc Id: ENSMUST00000137152
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2160,801,984 - 160,806,716 (-)Ensembl
GRCm38.p6 Ensembl2160,960,064 - 160,964,796 (-)Ensembl
Ensembl Acc Id: ENSMUST00000137831
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2160,856,012 - 160,860,169 (-)Ensembl
GRCm38.p6 Ensembl2161,014,092 - 161,018,249 (-)Ensembl
Ensembl Acc Id: ENSMUST00000138078
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2160,849,954 - 160,950,995 (-)Ensembl
GRCm38.p6 Ensembl2161,008,034 - 161,109,075 (-)Ensembl
Ensembl Acc Id: ENSMUST00000143081
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2160,801,863 - 160,803,441 (-)Ensembl
GRCm38.p6 Ensembl2160,959,943 - 160,961,521 (-)Ensembl
Ensembl Acc Id: ENSMUST00000149866
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2160,833,738 - 160,850,413 (-)Ensembl
GRCm38.p6 Ensembl2160,991,818 - 161,008,493 (-)Ensembl
Ensembl Acc Id: ENSMUST00000155066
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2160,867,806 - 160,871,468 (-)Ensembl
GRCm38.p6 Ensembl2161,025,886 - 161,029,548 (-)Ensembl
Ensembl Acc Id: ENSMUST00000155918
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2160,822,402 - 160,826,966 (-)Ensembl
GRCm38.p6 Ensembl2160,980,482 - 160,985,046 (-)Ensembl
RefSeq Acc Id: NM_173368   ⟹   NP_775544
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392160,788,898 - 160,951,006 (-)NCBI
GRCm382160,946,978 - 161,109,086 (-)NCBI
MGSCv372160,772,714 - 160,934,792 (-)RGD
Celera2166,877,653 - 167,040,039 (-)NCBI
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_126509
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392160,788,898 - 160,951,006 (-)NCBI
GRCm382160,946,978 - 161,109,086 (-)NCBI
Celera2166,877,653 - 167,040,039 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006500184   ⟹   XP_006500247
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392160,788,905 - 160,857,867 (-)NCBI
GRCm382160,946,985 - 161,015,947 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011239776   ⟹   XP_011238078
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392160,788,905 - 160,901,900 (-)NCBI
GRCm382160,946,985 - 161,060,873 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011239777   ⟹   XP_011238079
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392160,788,905 - 160,901,889 (-)NCBI
GRCm382160,946,985 - 161,059,806 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017319258   ⟹   XP_017174747
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392160,788,905 - 160,901,900 (-)NCBI
GRCm382160,946,985 - 161,060,871 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017319259   ⟹   XP_017174748
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392160,788,905 - 160,901,900 (-)NCBI
GRCm382160,946,985 - 161,060,893 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030252080   ⟹   XP_030107940
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392160,788,905 - 160,901,892 (-)NCBI
GRCm382160,946,985 - 161,059,969 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030252081   ⟹   XP_030107941
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392160,788,905 - 160,850,424 (-)NCBI
GRCm382160,946,985 - 161,008,504 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036162570   ⟹   XP_036018463
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392160,788,905 - 160,901,900 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001783180
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392160,788,905 - 160,903,299 (-)NCBI
GRCm382160,946,985 - 161,060,929 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001783181
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392160,801,966 - 160,903,309 (-)NCBI
GRCm382160,965,693 - 161,060,935 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004940730
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392160,801,966 - 160,903,309 (-)NCBI
Sequence:
RefSeq Acc Id: NP_775544   ⟸   NM_173368
- UniProtKB: Q3UQS6 (UniProtKB/Swiss-Prot),   B9EKA7 (UniProtKB/Swiss-Prot),   Q80TE9 (UniProtKB/Swiss-Prot),   A3KFM7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006500247   ⟸   XM_006500184
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_011238078   ⟸   XM_011239776
- Peptide Label: isoform X2
- UniProtKB: A3KFM7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011238079   ⟸   XM_011239777
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017174748   ⟸   XM_017319259
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017174747   ⟸   XM_017319258
- Peptide Label: isoform X1
- UniProtKB: Q3UQS6 (UniProtKB/Swiss-Prot),   B9EKA7 (UniProtKB/Swiss-Prot),   Q80TE9 (UniProtKB/Swiss-Prot),   A3KFM7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030107940   ⟸   XM_030252080
- Peptide Label: isoform X3
RefSeq Acc Id: XP_030107941   ⟸   XM_030252081
- Peptide Label: isoform X7
Ensembl Acc Id: ENSMUSP00000117075   ⟸   ENSMUST00000130265
Ensembl Acc Id: ENSMUSP00000123240   ⟸   ENSMUST00000134178
Ensembl Acc Id: ENSMUSP00000042291   ⟸   ENSMUST00000039782
RefSeq Acc Id: XP_036018463   ⟸   XM_036162570
- Peptide Label: isoform X4
Promoters
RGD ID:6831027
Promoter ID:MM_KWN:32799
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:OTTMUST00000038283
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362160,787,116 - 160,787,616 (-)MPROMDB
RGD ID:6831028
Promoter ID:MM_KWN:32806
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:UC008NRS.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362160,865,406 - 160,865,906 (-)MPROMDB
RGD ID:6831029
Promoter ID:MM_KWN:32809
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B6
Transcripts:ENSMUST00000039749,   ENSMUST00000068072,   NM_173368,   OTTMUST00000002093,   OTTMUST00000038182,   OTTMUST00000038281,   UC008NRP.1,   XM_001480742_GM4591
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362160,934,716 - 160,935,392 (-)MPROMDB
RGD ID:6879542
Promoter ID:EPDNEW_M3222
Type:initiation region
Name:Chd6_2
Description:Mus musculus chromodomain helicase DNA binding protein 6 , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M3223  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382160,982,725 - 160,982,785EPDNEW
RGD ID:6879544
Promoter ID:EPDNEW_M3223
Type:initiation region
Name:Chd6_1
Description:Mus musculus chromodomain helicase DNA binding protein 6 , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M3222  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382161,109,022 - 161,109,082EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1918639 AgrOrtholog
Ensembl Genes ENSMUSG00000057133 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000039782 ENTREZGENE
  ENSMUST00000039782.14 UniProtKB/Swiss-Prot
  ENSMUST00000130265.2 UniProtKB/TrEMBL
  ENSMUST00000134178.8 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.10810 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/Swiss-Prot
InterPro BRK_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BRK_sf UniProtKB/TrEMBL
  CHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Chromo-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Chromo/chromo_shadow_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Chromo_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DNA/RNA_helicase_DEAH_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Helicase_ATP-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Helicase_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SNF2-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SNF2/RAD54-like_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SNF2_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:71389 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1918639 ENTREZGENE
NCBI Gene 71389 ENTREZGENE
PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED UniProtKB/TrEMBL
  CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 6 UniProtKB/TrEMBL
  CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 9 UniProtKB/Swiss-Prot
  CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 9 UniProtKB/Swiss-Prot
  CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 9 UniProtKB/TrEMBL
  CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 9 UniProtKB/TrEMBL
  DNA HELICASE UniProtKB/TrEMBL
  PTHR46850:SF2 UniProtKB/TrEMBL
Pfam Chromo UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Helicase_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SNF2_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Chd6 PhenoGen
PROSITE CHROMO_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DEAH_ATP_HELICASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HELICASE_ATP_BIND_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HELICASE_CTER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART BRK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CHROMO UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DEXDc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HELICc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF160481 UniProtKB/TrEMBL
  SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF54160 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A3KFM6_MOUSE UniProtKB/TrEMBL
  A3KFM7 ENTREZGENE
  A3KFM8_MOUSE UniProtKB/TrEMBL
  B9EKA7 ENTREZGENE
  CHD6_MOUSE UniProtKB/Swiss-Prot
  Q3TSG0_MOUSE UniProtKB/TrEMBL
  Q3UQS6 ENTREZGENE
  Q6PBA0_MOUSE UniProtKB/TrEMBL
  Q80TE9 ENTREZGENE
  Q80YD0_MOUSE UniProtKB/TrEMBL
  Q8BIE8_MOUSE UniProtKB/TrEMBL
  Q8BJ75_MOUSE UniProtKB/TrEMBL
  Q8R2S5_MOUSE UniProtKB/TrEMBL
UniProt Secondary B9EKA7 UniProtKB/Swiss-Prot
  Q3UQS6 UniProtKB/Swiss-Prot
  Q80TE9 UniProtKB/Swiss-Prot