Ccbe1 (collagen and calcium binding EGF domains 1) - Rat Genome Database

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Gene: Ccbe1 (collagen and calcium binding EGF domains 1) Mus musculus
Analyze
Symbol: Ccbe1
Name: collagen and calcium binding EGF domains 1
RGD ID: 1551471
MGI Page MGI
Description: Predicted to enable collagen binding activity and protease binding activity. Involved in positive regulation of angiogenesis and positive regulation of lymphangiogenesis. Acts upstream of or within several processes, including lymphangiogenesis; positive regulation of endothelial cell migration; and respiratory system process. Predicted to be located in extracellular matrix and extracellular space. Predicted to be part of collagen trimer. Is expressed in several structures, including anterior cardinal vein; branchial arch; embryo mesenchyme; heart; and intraembryonic coelom. Human ortholog(s) of this gene implicated in Hennekam syndrome. Orthologous to human CCBE1 (collagen and calcium binding EGF domains 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4933426F18Rik; 9430093N24Rik; collagen and calcium-binding EGF domain-containing protein 1; full of fluid protein homolog; KIAA1983; MGC118667; mKIAA1983
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391866,189,926 - 66,424,909 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1866,178,373 - 66,435,812 (-)EnsemblGRCm39 Ensembl
GRCm381866,056,855 - 66,291,838 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1866,045,302 - 66,302,741 (-)EnsemblGRCm38mm10GRCm38
MGSCv371866,216,510 - 66,451,492 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361866,186,267 - 66,417,201 (-)NCBIMGSCv36mm8
Celera1867,332,660 - 67,571,414 (-)NCBICelera
Cytogenetic Map18E1NCBI
cM Map1839.13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. Mouse MP Annotation Import Pipeline RGD automated import pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:20562862   PMID:21778431   PMID:22252499   PMID:23299940   PMID:23426945  
PMID:24276893   PMID:24552833   PMID:24733830   PMID:25814692   PMID:27159393   PMID:28687807   PMID:28850031   PMID:28890073   PMID:30204931   PMID:30281646   PMID:31672914   PMID:31702554  
PMID:36293499   PMID:38141283   PMID:38355793  


Genomics

Comparative Map Data
Ccbe1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391866,189,926 - 66,424,909 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1866,178,373 - 66,435,812 (-)EnsemblGRCm39 Ensembl
GRCm381866,056,855 - 66,291,838 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1866,045,302 - 66,302,741 (-)EnsemblGRCm38mm10GRCm38
MGSCv371866,216,510 - 66,451,492 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361866,186,267 - 66,417,201 (-)NCBIMGSCv36mm8
Celera1867,332,660 - 67,571,414 (-)NCBICelera
Cytogenetic Map18E1NCBI
cM Map1839.13NCBI
CCBE1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381859,430,939 - 59,697,721 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1859,430,939 - 59,697,662 (-)EnsemblGRCh38hg38GRCh38
GRCh371857,098,171 - 57,364,655 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361855,252,124 - 55,515,570 (-)NCBINCBI36Build 36hg18NCBI36
Build 341855,252,128 - 55,515,570NCBI
Celera1853,815,992 - 54,082,692 (-)NCBICelera
Cytogenetic Map18q21.32NCBI
HuRef1853,807,272 - 54,074,065 (-)NCBIHuRef
CHM1_11857,093,481 - 57,360,274 (-)NCBICHM1_1
T2T-CHM13v2.01859,632,718 - 59,900,788 (-)NCBIT2T-CHM13v2.0
Ccbe1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81861,849,821 - 62,093,876 (-)NCBIGRCr8
mRatBN7.21859,579,851 - 59,823,977 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1859,580,768 - 59,824,400 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01861,758,754 - 62,013,194 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1861,759,289 - 61,788,863 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01860,953,314 - 61,204,084 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41862,407,265 - 62,442,194 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11862,444,950 - 62,516,306 (+)NCBI
Celera1857,703,958 - 57,944,773 (-)NCBICelera
Cytogenetic Map18q12.1NCBI
Ccbe1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540243,555,924 - 43,819,706 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540243,551,810 - 43,819,731 (-)NCBIChiLan1.0ChiLan1.0
CCBE1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21776,925,872 - 77,237,725 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11862,662,702 - 62,930,251 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01852,819,591 - 53,087,772 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11856,149,036 - 56,412,550 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1856,149,036 - 56,412,222 (-)Ensemblpanpan1.1panPan2
CCBE1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1116,597,389 - 16,819,888 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl116,597,334 - 16,819,894 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha117,573,095 - 17,795,588 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0116,468,211 - 16,697,179 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl116,468,224 - 16,697,173 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1116,503,987 - 16,732,917 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0116,430,870 - 16,653,326 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0116,686,056 - 16,915,078 (+)NCBIUU_Cfam_GSD_1.0
Ccbe1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494430,049,305 - 30,083,693 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364975,290,077 - 5,321,876 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364975,290,068 - 5,321,656 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCBE1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1161,321,273 - 161,556,537 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11161,320,627 - 161,556,539 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21178,904,622 - 179,130,264 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCBE1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11820,054,281 - 20,363,024 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1820,271,874 - 20,309,784 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660605,250,942 - 5,540,578 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccbe1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247924,867,858 - 5,146,839 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247924,863,978 - 5,146,907 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ccbe1
9707 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1445
Count of miRNA genes:683
Interacting mature miRNAs:831
Transcripts:ENSMUST00000061103, ENSMUST00000130300, ENSMUST00000146610, ENSMUST00000151343
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302099Hdlq30_mHDL QTL 30 (mouse)Not determined185166830085668468Mouse
11252137Modvl5_mmodifier of vacuolated lens 5 (mouse)185105215685052311Mouse
12910791Pwgrq8_mpre-weaning growth rate QTL 8 (mouse)185802139969349142Mouse
1558803W3q16_mweight 3 weeks QTL 16 (mouse)Not determined186127244881491831Mouse
10412183Sstapa2_mSuseptibility to Staphylococus aureus infection 2 (mouse)Not determined185679463066952485Mouse
10412244Par5_mpulmonary adenoma resistance 5 (mouse)Not determined185166830085668468Mouse
1301215Thcr_mT helper cell response (mouse)Not determined184513060468778777Mouse
1301853Heal9_mwound healing/regeneration 9 (mouse)Not determined185280527686805416Mouse
1302109Sluc28_msusceptibility to lung cancer 28 (mouse)Not determined185993532190720763Mouse
25823173Hrsq12_mhost response to SARS QTL 12, hemorrhage (mouse)182489588178339555Mouse
1357639Obsty4_mobesity 4 (mouse)Not determined183961991484638778Mouse
4142443Pgis1_mproteoglycan induced spondylitis 1 (mouse)Not determined185329102276914293Mouse
4140971Mbmq1_mmale body mass QTL 1 (mouse)Not determined5799028190720763Mouse
1301771Pcyts6_mplasmacytoma susceptibility 6 (mouse)Not determined183565863269658851Mouse
1301902Hrtfm4_mheart failure modifier 4 (mouse)Not determined184331112077311343Mouse
12880410V125Dq13_mvitamin D active form serum level QTL 13 (mouse)185643307190433071Mouse
4142239Idd21.2_minsulin dependent diabetes susceptibility 21.2 (mouse)Not determined186127244874562414Mouse
4142366Chlq10_mcirculating hormone level QTL 10 (mouse)Not determined183629102270291180Mouse
12050070Nabq2_mnasal bone morphology QTL 2 (mouse)183910367773103793Mouse
12880428V125Dq14_mvitamin D active form serum level QTL 14 (mouse)185743307190720763Mouse
1558782Orgwq9_morgan weight QTL 9 (mouse)Not determined186127244882604728Mouse
1357630Tgq1_mtriglyceride QTL 1 (mouse)Not determined185105215685052311Mouse
12880430Fgf23lq4_mFGF23 serum level QTL 4 (mouse)185643307190433071Mouse
11039492Ltpr8a_mLeishmania tropica response 8a (mouse)185918009290720763Mouse
12904745Carcdq2_mcardiac collagen deposition QTL 2 (mouse)184642328780423287Mouse
11039493Ltpr8d_mLeishmania tropica response 8d (mouse)184687490380875042Mouse
1357690Vtbt19_mvertebral trabecular bone trait 19 (mouse)Not determined183309104367091221Mouse
11039494Ltpr8b_mLeishmania tropica response 8b (mouse)184687490380875042Mouse
1301500Szs4_mseizure susceptibility 4 (mouse)Not determined185497587385514143Mouse
11039495Ltpr8c_mLeishmania tropica response 8c (mouse)185918009290720763Mouse
15039381Ltgq8_mliver triglyceride QTL 8 (mouse)183820656972206569Mouse
1302050Radpf4_mradiation pulmonary fibrosis 4 (mouse)Not determined185296615668778777Mouse
15039383Mvlq5_mmicrovesicular liver lesion QTL 5 (mouse)183820656972206569Mouse
4141132Eae18_mexperimental allergic encephalomyelitis susceptibility 18 (mouse)Not determined5759055982604728Mouse
11049564Lmr29_mleishmaniasis resistance 29 (mouse)185918009290720763Mouse
38455998Cdtm1_mCD62L+ CD8 TM cells 1 (mouse)186013307280043215Mouse
11039518Ltpr8_mLeishmania tropica response 8 (mouse)186387490376180241Mouse
1357603Mom3_mmodifier of Min 3 (mouse)Not determined181403002367098962Mouse
1301353Lbw6_mlupus NZB x NZW 6 (mouse)Not determined185756233890720763Mouse
1301103Pgia11_mproteoglycan induced arthritis 11 (mouse)Not determined185991418490720763Mouse
15039384Liviq1_mliver inflammation QTL 1 (mouse)183820656972206569Mouse
15039386Mvlq4_mmacrovesicular liver lesion QTL 4 (mouse)183820656972206569Mouse

Markers in Region
MHAa74a6.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381866,253,557 - 66,253,715UniSTSGRCm38
MGSCv371866,413,211 - 66,413,369UniSTSGRCm37
Celera1867,533,165 - 67,533,323UniSTS
Cytogenetic Map18E1UniSTS
Whitehead_YAC18 UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_178793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006526021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC102243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC157784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK016929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK035153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK039742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK220435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AV264768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC103803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC152322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ179960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000061103   ⟹   ENSMUSP00000052011
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1866,189,926 - 66,424,859 (-)Ensembl
GRCm38.p6 Ensembl1866,056,855 - 66,291,788 (-)Ensembl
Ensembl Acc Id: ENSMUST00000130300   ⟹   ENSMUSP00000117636
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1866,189,926 - 66,425,738 (-)Ensembl
GRCm38.p6 Ensembl1866,056,855 - 66,292,667 (-)Ensembl
Ensembl Acc Id: ENSMUST00000146610
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1866,178,373 - 66,424,517 (-)Ensembl
GRCm38.p6 Ensembl1866,045,302 - 66,291,446 (-)Ensembl
Ensembl Acc Id: ENSMUST00000151343
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1866,402,092 - 66,435,812 (-)Ensembl
GRCm38.p6 Ensembl1866,269,021 - 66,302,741 (-)Ensembl
Ensembl Acc Id: ENSMUST00000235872   ⟹   ENSMUSP00000157925
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1866,192,744 - 66,209,474 (-)Ensembl
GRCm38.p6 Ensembl1866,059,673 - 66,076,403 (-)Ensembl
Ensembl Acc Id: ENSMUST00000236402   ⟹   ENSMUSP00000157390
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1866,402,092 - 66,424,898 (-)Ensembl
GRCm38.p6 Ensembl1866,269,021 - 66,291,827 (-)Ensembl
Ensembl Acc Id: ENSMUST00000236848   ⟹   ENSMUSP00000157891
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1866,216,181 - 66,424,903 (-)Ensembl
GRCm38.p6 Ensembl1866,083,110 - 66,291,832 (-)Ensembl
RefSeq Acc Id: NM_178793   ⟹   NP_848908
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391866,189,927 - 66,424,909 (-)NCBI
GRCm381866,056,856 - 66,291,838 (-)NCBI
MGSCv371866,216,510 - 66,451,492 (-)RGD
Celera1867,332,660 - 67,571,414 (-)RGD
cM Map18 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006526021   ⟹   XP_006526084
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391866,189,926 - 66,223,078 (-)NCBI
GRCm381866,056,855 - 66,090,199 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036161176   ⟹   XP_036017069
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391866,189,926 - 66,257,037 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036161177   ⟹   XP_036017070
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391866,189,926 - 66,297,329 (-)NCBI
Sequence:
RefSeq Acc Id: NP_848908   ⟸   NM_178793
- Peptide Label: precursor
- UniProtKB: Q8BFW1 (UniProtKB/Swiss-Prot),   Q5DTT5 (UniProtKB/Swiss-Prot),   A7MCU5 (UniProtKB/Swiss-Prot),   Q8BMT1 (UniProtKB/Swiss-Prot),   Q3MI99 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006526084   ⟸   XM_006526021
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSMUSP00000117636   ⟸   ENSMUST00000130300
Ensembl Acc Id: ENSMUSP00000157891   ⟸   ENSMUST00000236848
Ensembl Acc Id: ENSMUSP00000157390   ⟸   ENSMUST00000236402
Ensembl Acc Id: ENSMUSP00000052011   ⟸   ENSMUST00000061103
Ensembl Acc Id: ENSMUSP00000157925   ⟸   ENSMUST00000235872
RefSeq Acc Id: XP_036017070   ⟸   XM_036161177
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036017069   ⟸   XM_036161176
- Peptide Label: isoform X2
Protein Domains
Collagen-like   EGF-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3MI99-F1-model_v2 AlphaFold Q3MI99 1-408 view protein structure

Promoters
RGD ID:13678046
Promoter ID:EPDNEW_M23172
Type:single initiation site
Name:Ccbe1_2
Description:Mus musculus collagen and calcium binding EGF domains 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M23174  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381866,267,528 - 66,267,588EPDNEW
RGD ID:13678050
Promoter ID:EPDNEW_M23174
Type:initiation region
Name:Ccbe1_1
Description:Mus musculus collagen and calcium binding EGF domains 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M23172  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381866,291,832 - 66,291,892EPDNEW
RGD ID:6829131
Promoter ID:MM_KWN:25530
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Spleen
Transcripts:ENSMUST00000115085,   NM_178793,   OTTMUST00000069916,   OTTMUST00000069917,   UC008FFQ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361866,451,076 - 66,451,576 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2445053 AgrOrtholog
Ensembl Genes ENSMUSG00000046318 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000061103.14 UniProtKB/Swiss-Prot
  ENSMUST00000130300 ENTREZGENE
  ENSMUST00000130300.3 UniProtKB/Swiss-Prot
  ENSMUST00000235872.2 UniProtKB/TrEMBL
  ENSMUST00000236402.2 UniProtKB/TrEMBL
  ENSMUST00000236848.2 UniProtKB/TrEMBL
Gene3D-CATH Laminin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Collagen UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF-like_Ca-bd_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF-type_Asp/Asn_hydroxyl_site UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF_Ca-bd_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nematode_Cuticular_Collagen UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:320924 UniProtKB/Swiss-Prot
MGD MGI:2445053 ENTREZGENE
NCBI Gene 320924 ENTREZGENE
PANTHER COLLAGEN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SCAVENGER RECEPTOR CLASS A MEMBER 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Collagen UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FXa_inhibition UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ccbe1 PhenoGen
PROSITE ASX_HYDROXYL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF_CA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART EGF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF_CA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A494B905_MOUSE UniProtKB/TrEMBL
  A0A494BA41_MOUSE UniProtKB/TrEMBL
  A0A494BA47_MOUSE UniProtKB/TrEMBL
  A7MCU5 ENTREZGENE
  CCBE1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q5DTT5 ENTREZGENE
  Q8BFW1 ENTREZGENE
  Q8BJC3_MOUSE UniProtKB/TrEMBL
  Q8BMT1 ENTREZGENE
  Q9D3Z4_MOUSE UniProtKB/TrEMBL
UniProt Secondary A7MCU5 UniProtKB/Swiss-Prot
  Q5DTT5 UniProtKB/Swiss-Prot
  Q8BFW1 UniProtKB/Swiss-Prot
  Q8BMT1 UniProtKB/Swiss-Prot