Arhgap17 (Rho GTPase activating protein 17) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Arhgap17 (Rho GTPase activating protein 17) Mus musculus
Analyze
Symbol: Arhgap17
Name: Rho GTPase activating protein 17
RGD ID: 1551368
MGI Page MGI
Description: Predicted to enable GTPase activator activity. Predicted to be involved in negative regulation of small GTPase mediated signal transduction; regulation of Rac protein signal transduction; and regulation of actin cytoskeleton organization. Predicted to act upstream of or within actin filament organization and calcium-ion regulated exocytosis. Located in plasma membrane. Is expressed in facial prominence ectoderm; limb; and limb mesenchyme. Orthologous to human ARHGAP17 (Rho GTPase activating protein 17).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 5730403H17Rik; N; Na; Nadrin; Nadrin2; neuron-associated developmentally regulated protein; neuron-associated developmentally-regulated protein; rho GTPase-activating protein 17; rho-type GTPase-activating protein 17; Ric; Rich1; WBP1; Wbp15; WW domain-binding protein 15
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397122,878,372 - 122,969,171 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7122,878,441 - 122,969,138 (-)EnsemblGRCm39 Ensembl
GRCm387123,279,149 - 123,369,948 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7123,279,218 - 123,369,915 (-)EnsemblGRCm38mm10GRCm38
MGSCv377130,422,663 - 130,513,429 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367123,070,419 - 123,161,030 (-)NCBIMGSCv36mm8
Celera7123,162,260 - 123,253,139 (-)NCBICelera
Cytogenetic Map7F3NCBI
cM Map767.42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
bicellular tight junction  (IEA)
cytoplasm  (ISO)
cytosol  (IBA,IEA,ISO)
plasma membrane  (IBA,IDA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Nadrin, a novel neuron-specific GTPase-activating protein involved in regulated exocytosis. Harada A, etal., J Biol Chem 2000 Nov 24;275(47):36885-91.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Application quantitative proteomics approach to identify differentially expressed proteins associated with cardiac protection mediated by cycloastragenol in acute myocardial infarction rats. Ren YS, etal., J Proteomics. 2020 Jun 30;222:103691. doi: 10.1016/j.jprot.2020.103691. Epub 2020 Feb 14.
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10744724   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:14610273   PMID:15489334   PMID:15782199   PMID:16141072  
PMID:16141073   PMID:16602821   PMID:17967808   PMID:18799693   PMID:20059953   PMID:21267068   PMID:21677750   PMID:21725061   PMID:21873635   PMID:22750946   PMID:22975681   PMID:23355722  
PMID:24703939   PMID:26371508   PMID:27229483   PMID:27721240   PMID:29091030   PMID:30973865   PMID:32253237   PMID:32554809   PMID:36681682   PMID:38355793  


Genomics

Comparative Map Data
Arhgap17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397122,878,372 - 122,969,171 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7122,878,441 - 122,969,138 (-)EnsemblGRCm39 Ensembl
GRCm387123,279,149 - 123,369,948 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7123,279,218 - 123,369,915 (-)EnsemblGRCm38mm10GRCm38
MGSCv377130,422,663 - 130,513,429 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367123,070,419 - 123,161,030 (-)NCBIMGSCv36mm8
Celera7123,162,260 - 123,253,139 (-)NCBICelera
Cytogenetic Map7F3NCBI
cM Map767.42NCBI
ARHGAP17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381624,919,389 - 25,015,369 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1624,919,389 - 25,015,666 (-)EnsemblGRCh38hg38GRCh38
GRCh371624,930,710 - 25,026,690 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361624,838,211 - 24,934,176 (-)NCBINCBI36Build 36hg18NCBI36
Build 341624,838,214 - 24,934,176NCBI
Celera1623,711,720 - 23,807,687 (-)NCBICelera
Cytogenetic Map16p12.1NCBI
HuRef1623,024,541 - 23,120,621 (-)NCBIHuRef
CHM1_11625,944,641 - 26,040,593 (-)NCBICHM1_1
T2T-CHM13v2.01625,199,011 - 25,294,991 (-)NCBIT2T-CHM13v2.0
Arhgap17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81187,238,675 - 187,328,093 (-)NCBIGRCr8
mRatBN7.21177,807,579 - 177,897,027 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1177,807,583 - 177,896,854 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1186,143,532 - 186,232,738 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01193,329,522 - 193,418,726 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01186,007,252 - 186,096,430 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01193,239,036 - 193,328,425 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1193,239,040 - 193,328,371 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01200,297,800 - 200,387,169 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41182,145,313 - 182,234,995 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11182,285,231 - 182,375,315 (-)NCBI
Celera1175,495,700 - 175,585,527 (-)NCBICelera
Cytogenetic Map1q36NCBI
Arhgap17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554933,327,584 - 3,384,620 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554933,326,893 - 3,384,621 (-)NCBIChiLan1.0ChiLan1.0
ARHGAP17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21826,328,248 - 26,428,220 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11630,848,933 - 30,949,020 (-)NCBINHGRI_mPanPan1
PanPan1.11625,160,485 - 25,255,913 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1625,161,229 - 25,220,151 (-)Ensemblpanpan1.1panPan2
ARHGAP17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1621,081,965 - 21,176,685 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl621,073,912 - 21,176,205 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha626,076,872 - 26,171,875 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0621,222,691 - 21,315,817 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl621,222,712 - 21,311,972 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1621,025,615 - 21,120,189 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0620,928,650 - 21,023,425 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0621,323,131 - 21,417,935 (+)NCBIUU_Cfam_GSD_1.0
Arhgap17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344121,159,093 - 121,209,374 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365019,257,654 - 9,307,230 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365019,256,950 - 9,307,228 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARHGAP17
(Sus scrofa - pig)
No map positions available.
ARHGAP17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1522,634,252 - 22,739,810 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl522,640,686 - 22,703,115 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660686,993,921 - 7,091,716 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arhgap17
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247829,882,317 - 9,974,090 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247829,881,631 - 9,974,238 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Arhgap17
4001 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:798
Count of miRNA genes:243
Interacting mature miRNAs:255
Transcripts:ENSMUST00000098060, ENSMUST00000106442, ENSMUST00000167309
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357460Vtbt4_mvertebral trabecular bone trait 4 (mouse)Not determined7101693381135693530Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
1302032Alcp12_malcohol preference locus 12 (mouse)Not determined7111166122144995196Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
11039524Tbbr3_mTrypanosoma brucei brucei response 3 (mouse)7100750722134750843Mouse
27226769Tibl12_mtibia length 12, 10 week (mouse)787249208126499172Mouse
27226765Tibl18_mtibia length 18, 16 week (mouse)781849748126499172Mouse
27226763Feml20_mfemur length 20, 16 week (mouse)785049208124199223Mouse
1300747Skts2_mskin tumor susceptibility 2 (mouse)Not determined7112922733144995196Mouse
1301898Alcp14_malcohol preference locus 14 (mouse)Not determined7111166122144995196Mouse
1357711Adbg1_madult body growth 1 (mouse)Not determined7118693381144398314Mouse
38501072Stsl7_mSalmonella typhimurium susceptibility locus 7 (mouse)7115699235128501724Mouse
1301903Tlsm1_mthymic lymphoma susceptible 1 (mouse)Not determined7122250663135170901Mouse
1301773Stheal7_msoft tissue heal 7 (mouse)Not determined7119132573144995196Mouse
1301937Skull10_mskull morphology 10 (mouse)Not determined791482996125483156Mouse
13208555Lgth10_mbody length 10 (mouse)751649748125599172Mouse
1300528Ssial3_msusceptibility to sialadenitis 3 (mouse)Not determined793391848127392041Mouse
5491192Mobq1_mmultigenic obesity QTL 1 (mouse)Not determined7105250663139250811Mouse
1300670Sluc19_msusceptibility to lung cancer 19 (mouse)Not determined7111166122144995196Mouse
26884398Humsd6_mhumerus midshaft diameter 6, 16 week (mouse)778649748136901729Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
1357613Bsbob2_mBSB obesity 2 (mouse)Not determined7122250663128819324Mouse
27226790Feml15_mfemur length 15, 10 week (mouse)787249208126499172Mouse
13524852Asrq7a_macoustic startle response 7a (mouse)7105350008139350008Mouse
13524850Asrq7_macoustic startle response 7 (mouse)798394974132394974Mouse
15092059Wogrme1_mweek one growth rate, maternal effect 1 (mouse)7117199227134101729Mouse
11059561Lmr21a_mleishmaniasis resistance 21a (mouse)7117750722127967336Mouse
27095903Scvln10_msacral vertebrae length 2, 10 week (mouse)781449748126499172Mouse
11059562Lmr21b_mleishmaniasis resistance 21b (mouse)7110967235144967336Mouse
26884440Sklq4_mskull length QTL 4, 5 week (mouse)765249748126499172Mouse
26884444Sklq8_mskull length QTL 8, 10 week (mouse)767849748124199223Mouse
1558745Tsiq1_mT-cell secretion of IL-4 QTL 1 (mouse)Not determined7119485219125141349Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
4142444Femwf5_mfemur work to failure 5 (mouse)Not determined112552248144995196Mouse
1301447Fembm3_mfemoral bone morphometry 3 (mouse)Not determined7100993261134993342Mouse
1300677Bmd9_mbone mineral density 9 (mouse)Not determined7116634089144995196Mouse
10412104Tons2_mtongue size 2 (mouse)Not determined799837716133837716Mouse
4142312Nilac4_mnicotine induced locomotor activity 4 (mouse)Not determined7102485219136485380Mouse
10402499Lmr21_mleishmaniasis resistance 21 (mouse)Not determined7110967235144967336Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773149748143153737Mouse
1300721Cfbw3_mcystic fibrosis body weight 3 (mouse)Not determined7101693381135693530Mouse
1301105Cfld4_mcystic fibrosis lung disease 4 (mouse)Not determined7101693381135693530Mouse
27095930Ulnl10_mulna length 10, 16 week (mouse)780849748126699172Mouse
14700684Civq1_mcerebral infarct volume QTL 1 (mouse)7109707335143707335Mouse
27095923Pglq3_mpelvic girdle length QTL 3, 5 week (mouse)781249748124199223Mouse
14700687Civq5_mcerebral infarct volume QTL 5 (mouse)7109707335143707335Mouse
14700688Civq6_mcerebral infarct volume QTL 6 (mouse)7109707335143707335Mouse
27095916Scvln15_msacral vertebrae length 2, 16 week (mouse)761749748123699223Mouse
1357664Nba3_mNew Zealand Black autoimmunity 3 (mouse)Not determined791482996125483156Mouse
1301478Eae26_msusceptibility to experimental allergic encephalomyelitis 26 (mouse)Not determined798164922132165010Mouse
26884451Sklq14_mskull length QTL 14, 16 week (mouse)767849748124999172Mouse
27095910Pglq13_mpelvic girdle length QTL 13, 16 week (mouse)773049748125699172Mouse

Markers in Region
RH127120  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387123,290,296 - 123,290,503UniSTSGRCm38
MGSCv377130,433,810 - 130,434,017UniSTSGRCm37
Celera7123,173,407 - 123,173,614UniSTS
Cytogenetic Map7F3UniSTS
cM Map761.0UniSTS
Whitehead/MRC_RH71269.52UniSTS
Arhgap17  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F3UniSTS
cM Map7 UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001122640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001122641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001122642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001122643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001316713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_144529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006508201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030242982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_869745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB060553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB060554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC121956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC138364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AEKQ02006250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF073934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI842721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK017483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK081590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AV321044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC003259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000098060   ⟹   ENSMUSP00000095668
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7122,878,494 - 122,969,109 (-)Ensembl
GRCm38.p6 Ensembl7123,279,271 - 123,369,886 (-)Ensembl
Ensembl Acc Id: ENSMUST00000106442   ⟹   ENSMUSP00000102050
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7122,878,494 - 122,969,109 (-)Ensembl
GRCm38.p6 Ensembl7123,279,271 - 123,369,886 (-)Ensembl
Ensembl Acc Id: ENSMUST00000167309   ⟹   ENSMUSP00000128447
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7122,878,498 - 122,969,101 (-)Ensembl
GRCm38.p6 Ensembl7123,279,275 - 123,369,878 (-)Ensembl
Ensembl Acc Id: ENSMUST00000205262   ⟹   ENSMUSP00000146035
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7122,878,608 - 122,969,108 (-)Ensembl
GRCm38.p6 Ensembl7123,279,385 - 123,369,885 (-)Ensembl
Ensembl Acc Id: ENSMUST00000205785
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7122,886,209 - 122,895,813 (-)Ensembl
GRCm38.p6 Ensembl7123,286,986 - 123,296,590 (-)Ensembl
Ensembl Acc Id: ENSMUST00000205805
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7122,968,000 - 122,969,099 (-)Ensembl
GRCm38.p6 Ensembl7123,368,777 - 123,369,876 (-)Ensembl
Ensembl Acc Id: ENSMUST00000205936   ⟹   ENSMUSP00000146019
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7122,920,872 - 122,969,138 (-)Ensembl
GRCm38.p6 Ensembl7123,321,649 - 123,369,915 (-)Ensembl
Ensembl Acc Id: ENSMUST00000206117   ⟹   ENSMUSP00000145627
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7122,878,503 - 122,969,126 (-)Ensembl
GRCm38.p6 Ensembl7123,279,280 - 123,369,903 (-)Ensembl
Ensembl Acc Id: ENSMUST00000206294
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7122,894,502 - 122,969,138 (-)Ensembl
GRCm38.p6 Ensembl7123,295,279 - 123,369,915 (-)Ensembl
Ensembl Acc Id: ENSMUST00000206803
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7122,882,160 - 122,885,464 (-)Ensembl
GRCm38.p6 Ensembl7123,282,937 - 123,286,241 (-)Ensembl
Ensembl Acc Id: ENSMUST00000207010   ⟹   ENSMUSP00000145628
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7122,878,441 - 122,969,074 (-)Ensembl
GRCm38.p6 Ensembl7123,279,218 - 123,369,851 (-)Ensembl
RefSeq Acc Id: NM_001122640   ⟹   NP_001116112
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397122,878,372 - 122,969,138 (-)NCBI
GRCm387123,279,149 - 123,369,915 (-)NCBI
MGSCv377130,422,663 - 130,513,429 (-)RGD
Celera7123,162,260 - 123,253,139 (-)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001122641   ⟹   NP_001116113
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397122,878,372 - 122,969,138 (-)NCBI
GRCm387123,279,149 - 123,369,915 (-)NCBI
MGSCv377130,422,663 - 130,513,429 (-)RGD
Celera7123,162,260 - 123,253,139 (-)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001122642   ⟹   NP_001116114
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397122,878,372 - 122,969,138 (-)NCBI
GRCm387123,279,149 - 123,369,915 (-)NCBI
MGSCv377130,422,663 - 130,513,429 (-)RGD
Celera7123,162,260 - 123,253,139 (-)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001122643   ⟹   NP_001116115
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397122,878,372 - 122,969,138 (-)NCBI
GRCm387123,279,149 - 123,369,915 (-)NCBI
MGSCv377130,422,663 - 130,513,429 (-)RGD
Celera7123,162,260 - 123,253,139 (-)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001316713   ⟹   NP_001303642
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397122,878,372 - 122,969,138 (-)NCBI
GRCm387123,279,149 - 123,369,915 (-)NCBI
Sequence:
RefSeq Acc Id: NM_144529   ⟹   NP_653112
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397122,878,372 - 122,969,138 (-)NCBI
GRCm387123,279,149 - 123,369,915 (-)NCBI
MGSCv377130,422,663 - 130,513,429 (-)RGD
Celera7123,162,260 - 123,253,139 (-)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006508201   ⟹   XP_006508264
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397122,878,372 - 122,969,171 (-)NCBI
GRCm387123,279,149 - 123,369,948 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030242982   ⟹   XP_030098842
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397122,878,372 - 122,969,159 (-)NCBI
GRCm387123,279,149 - 123,369,936 (-)NCBI
Sequence:
RefSeq Acc Id: XR_869745
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397122,878,372 - 122,969,171 (-)NCBI
GRCm387123,280,028 - 123,369,948 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001116112 (Get FASTA)   NCBI Sequence Viewer  
  NP_001116113 (Get FASTA)   NCBI Sequence Viewer  
  NP_001116114 (Get FASTA)   NCBI Sequence Viewer  
  NP_001116115 (Get FASTA)   NCBI Sequence Viewer  
  NP_001303642 (Get FASTA)   NCBI Sequence Viewer  
  NP_653112 (Get FASTA)   NCBI Sequence Viewer  
  XP_006508264 (Get FASTA)   NCBI Sequence Viewer  
  XP_030098842 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH03259 (Get FASTA)   NCBI Sequence Viewer  
  BAB43862 (Get FASTA)   NCBI Sequence Viewer  
  BAB43863 (Get FASTA)   NCBI Sequence Viewer  
  BAC29443 (Get FASTA)   NCBI Sequence Viewer  
  BAC29508 (Get FASTA)   NCBI Sequence Viewer  
  BAE27604 (Get FASTA)   NCBI Sequence Viewer  
  BAE29214 (Get FASTA)   NCBI Sequence Viewer  
  BAE31084 (Get FASTA)   NCBI Sequence Viewer  
  BAE43249 (Get FASTA)   NCBI Sequence Viewer  
  EDL17300 (Get FASTA)   NCBI Sequence Viewer  
  EDL17301 (Get FASTA)   NCBI Sequence Viewer  
  EDL17302 (Get FASTA)   NCBI Sequence Viewer  
  EDL17303 (Get FASTA)   NCBI Sequence Viewer  
  EDL17304 (Get FASTA)   NCBI Sequence Viewer  
  EDL17305 (Get FASTA)   NCBI Sequence Viewer  
  EDL17306 (Get FASTA)   NCBI Sequence Viewer  
  EDL17307 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000095668
  ENSMUSP00000095668.5
  ENSMUSP00000102050
  ENSMUSP00000102050.3
  ENSMUSP00000128447
  ENSMUSP00000128447.2
  ENSMUSP00000145627.2
  ENSMUSP00000145628
  ENSMUSP00000145628.2
  ENSMUSP00000146019.2
  ENSMUSP00000146035
  ENSMUSP00000146035.2
GenBank Protein Q3UIA2 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_653112   ⟸   NM_144529
- Peptide Label: isoform a
- UniProtKB: Q99N39 (UniProtKB/Swiss-Prot),   Q99LH3 (UniProtKB/Swiss-Prot),   Q8BGD1 (UniProtKB/Swiss-Prot),   Q3UDP7 (UniProtKB/Swiss-Prot),   Q99N40 (UniProtKB/Swiss-Prot),   Q3UIA2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001116112   ⟸   NM_001122640
- Peptide Label: isoform b
- UniProtKB: E9QAJ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001116113   ⟸   NM_001122641
- Peptide Label: isoform c
- UniProtKB: Q3UIA2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001116114   ⟸   NM_001122642
- Peptide Label: isoform d
- UniProtKB: Q3UIA2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001116115   ⟸   NM_001122643
- Peptide Label: isoform e
- UniProtKB: Q3UIA2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006508264   ⟸   XM_006508201
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001303642   ⟸   NM_001316713
- Peptide Label: isoform f
- UniProtKB: Q3UIA2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030098842   ⟸   XM_030242982
- Peptide Label: isoform X2
Ensembl Acc Id: ENSMUSP00000145627   ⟸   ENSMUST00000206117
Ensembl Acc Id: ENSMUSP00000146019   ⟸   ENSMUST00000205936
Ensembl Acc Id: ENSMUSP00000146035   ⟸   ENSMUST00000205262
Ensembl Acc Id: ENSMUSP00000102050   ⟸   ENSMUST00000106442
Ensembl Acc Id: ENSMUSP00000145628   ⟸   ENSMUST00000207010
Ensembl Acc Id: ENSMUSP00000128447   ⟸   ENSMUST00000167309
Ensembl Acc Id: ENSMUSP00000095668   ⟸   ENSMUST00000098060
Protein Domains
BAR   Rho-GAP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3UIA2-F1-model_v2 AlphaFold Q3UIA2 1-846 view protein structure

Promoters
RGD ID:8665485
Promoter ID:EPDNEW_M10774
Type:initiation region
Name:Arhgap17_1
Description:Mus musculus Rho GTPase activating protein 17 , transcript variant3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm387123,369,851 - 123,369,911EPDNEW
RGD ID:6848081
Promoter ID:MM_ACW:45994
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour
Transcripts:ARHGAP17.JSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367130,429,961 - 130,430,461 (-)MPROMDB
RGD ID:6840659
Promoter ID:MM_KWN:52607
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000010403,   ENSMUST00000018324,   ENSMUST00000106442,   NM_001122640,   NM_001122641,   NM_001122642,   NM_001122643,   NM_144529,   UC009JPL.1,   UC009JPO.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367130,513,121 - 130,513,842 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1917747 AgrOrtholog
Ensembl Genes ENSMUSG00000030766 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000098060 ENTREZGENE
  ENSMUST00000098060.5 UniProtKB/Swiss-Prot
  ENSMUST00000106442 ENTREZGENE
  ENSMUST00000106442.9 UniProtKB/Swiss-Prot
  ENSMUST00000167309 ENTREZGENE
  ENSMUST00000167309.8 UniProtKB/TrEMBL
  ENSMUST00000205262 ENTREZGENE
  ENSMUST00000205262.2 UniProtKB/Swiss-Prot
  ENSMUST00000205936.2 UniProtKB/TrEMBL
  ENSMUST00000206117 ENTREZGENE
  ENSMUST00000206117.2 UniProtKB/TrEMBL
  ENSMUST00000207010 ENTREZGENE
  ENSMUST00000207010.2 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.555.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.20.1270.60 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro AH/BAR_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BAR_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RHG17/44/SH3BP1-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rho_GTPase_activation_prot UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RhoGAP_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:70497 UniProtKB/Swiss-Prot
MGD MGI:1917747 ENTREZGENE
NCBI Gene 70497 ENTREZGENE
PANTHER 3BP-1 RELATED RHOGAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RHO GTPASE-ACTIVATING PROTEIN 17 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam BAR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RhoGAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Arhgap17 PhenoGen
PROSITE BAR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RHOGAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART BAR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RhoGAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF103657 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF48350 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0U1RNM6_MOUSE UniProtKB/TrEMBL
  A0A0U1RPK6_MOUSE UniProtKB/TrEMBL
  E9QAJ9 ENTREZGENE, UniProtKB/TrEMBL
  Q3UDP7 ENTREZGENE
  Q3UIA2 ENTREZGENE
  Q3V425_MOUSE UniProtKB/TrEMBL
  Q8BGD1 ENTREZGENE
  Q99LH3 ENTREZGENE
  Q99N39 ENTREZGENE
  Q99N40 ENTREZGENE
  RHG17_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q3UDP7 UniProtKB/Swiss-Prot
  Q8BGD1 UniProtKB/Swiss-Prot
  Q99LH3 UniProtKB/Swiss-Prot
  Q99N39 UniProtKB/Swiss-Prot
  Q99N40 UniProtKB/Swiss-Prot