Clec4e (C-type lectin domain family 4, member e) - Rat Genome Database

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Gene: Clec4e (C-type lectin domain family 4, member e) Mus musculus
Analyze
Symbol: Clec4e
Name: C-type lectin domain family 4, member e
RGD ID: 1551121
MGI Page MGI
Description: Enables glycolipid binding activity and pattern recognition receptor activity. Involved in antifungal innate immune response and positive regulation of cytokine production. Acts upstream of or within Fc-gamma receptor signaling pathway; T cell differentiation involved in immune response; and defense response to bacterium. Is active in phagocytic vesicle membrane and plasma membrane. Orthologous to human CLEC4E (C-type lectin domain family 4 member E).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: C-type (calcium dependent, carbohydrate recognition domain) lectin, superfamily member 9; C-type lectin domain family 4 member E; C-type lectin superfamily member 9; C-type lectin, superfamily member 9; C86253; Clecs; Clecsf9; macrophage-inducible C-type lectin; Min; Mincle
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396123,258,748 - 123,266,830 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6123,258,748 - 123,266,829 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm386123,281,789 - 123,289,871 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6123,281,789 - 123,289,870 (-)Ensemblmm10GRCm38
MGSCv376123,231,807 - 123,239,889 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv366123,247,408 - 123,255,490 (-)NCBIMGSCv36mm8
Celera6125,079,435 - 125,087,544 (-)NCBICelera
Cytogenetic Map6F2NCBI
cM Map658.35NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Identification of lectin-like receptors expressed by antigen presenting cells and neutrophils and their mapping to a novel gene complex. Flornes LM, etal., Immunogenetics 2004 Oct;56(7):506-17. Epub 2004 Sep 11.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. A novel LPS-inducible C-type lectin is a transcriptional target of NF-IL6 in macrophages. Matsumoto M, etal., J Immunol 1999 Nov 1;163(9):5039-48.
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:15489334   PMID:16141072   PMID:16141073   PMID:18490740   PMID:18776906   PMID:19171887  
PMID:20008524   PMID:20008526   PMID:20164423   PMID:20562862   PMID:21677750   PMID:21873635   PMID:22479529   PMID:22496642   PMID:22784441   PMID:22869905   PMID:23118208   PMID:23308247  
PMID:23601109   PMID:23602766   PMID:23630357   PMID:24353272   PMID:24391211   PMID:24733387   PMID:25127469   PMID:25156364   PMID:25202022   PMID:25236782   PMID:25332121   PMID:25645884  
PMID:25658823   PMID:25888641   PMID:25915733   PMID:26140582   PMID:26655905   PMID:26747838   PMID:26921309   PMID:26939595   PMID:27005451   PMID:27049944   PMID:27089465   PMID:27252171  
PMID:27559045   PMID:27587433   PMID:27628766   PMID:27742545   PMID:27872290   PMID:27923071   PMID:28017324   PMID:28112221   PMID:28186242   PMID:28292894   PMID:28298521   PMID:28373578  
PMID:28483856   PMID:28888778   PMID:29355515   PMID:29401615   PMID:29576482   PMID:30352847   PMID:30635358   PMID:30696945   PMID:30709742   PMID:30850233   PMID:30917612   PMID:30970258  
PMID:31231363   PMID:31242262   PMID:31297112   PMID:31393930   PMID:31462144   PMID:31852849   PMID:32554809   PMID:32773408   PMID:32797195   PMID:32817316   PMID:32868343   PMID:32991669  
PMID:33158955   PMID:33262251   PMID:33264612   PMID:33717025   PMID:33723368   PMID:33732234   PMID:33840686   PMID:34320039   PMID:34466750   PMID:34556635   PMID:35294793   PMID:35418999  
PMID:35867828   PMID:36680813   PMID:36736320   PMID:36753434   PMID:37185170   PMID:37799716   PMID:38170734   PMID:38215167   PMID:38770013   PMID:38844494   PMID:39581231  


Genomics

Comparative Map Data
Clec4e
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396123,258,748 - 123,266,830 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6123,258,748 - 123,266,829 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm386123,281,789 - 123,289,871 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6123,281,789 - 123,289,870 (-)Ensemblmm10GRCm38
MGSCv376123,231,807 - 123,239,889 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv366123,247,408 - 123,255,490 (-)NCBIMGSCv36mm8
Celera6125,079,435 - 125,087,544 (-)NCBICelera
Cytogenetic Map6F2NCBI
cM Map658.35NCBI
CLEC4E
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38128,533,275 - 8,540,905 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl128,533,305 - 8,540,905 (-)Ensemblhg38GRCh38
GRCh37128,685,871 - 8,693,501 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36128,577,168 - 8,584,825 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34128,577,167 - 8,584,811NCBI
Celera1210,221,897 - 10,229,555 (-)NCBICelera
Cytogenetic Map12p13.31NCBI
HuRef128,468,250 - 8,475,908 (-)NCBIHuRef
CHM1_1128,654,869 - 8,662,532 (-)NCBICHM1_1
T2T-CHM13v2.0128,516,734 - 8,524,370 (-)NCBIT2T-CHM13v2.0
Clec4e
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84158,292,624 - 158,298,607 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4158,293,311 - 158,298,467 (-)EnsemblGRCr8
mRatBN7.24156,606,927 - 156,612,911 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4156,607,614 - 156,612,767 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4162,859,832 - 162,864,988 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04158,642,716 - 158,647,872 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04157,288,124 - 157,293,280 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04156,271,087 - 156,276,243 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4156,270,920 - 156,276,304 (-)Ensemblrn6Rnor6.0
Rnor_5.04223,287,319 - 223,293,143 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44159,901,953 - 159,907,090 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4145,397,723 - 145,402,880 (-)NCBICelera
RGSC_v3.14160,146,888 - 160,152,042 (-)NCBI
Cytogenetic Map4q42NCBI
Clec4e
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554135,256,440 - 5,262,938 (+)Ensembl
ChiLan1.0NW_0049554135,256,523 - 5,261,385 (+)NCBIChiLan1.0ChiLan1.0
CLEC4E
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21014,057,708 - 14,070,479 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11214,054,468 - 14,067,239 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0128,620,618 - 8,627,610 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1128,835,598 - 8,842,081 (-)NCBIPanPan1.1PanPan1.1panPan2
LOC611538
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12737,561,445 - 37,568,652 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2737,563,038 - 37,568,463 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha279,047,754 - 9,054,953 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02737,914,984 - 37,922,184 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2737,904,114 - 37,922,172 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12737,789,556 - 37,796,752 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02737,831,158 - 37,838,354 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0278,534,492 - 8,541,692 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Clec4e
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494599,900,137 - 99,906,784 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936858316,954 - 321,668 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936858316,954 - 321,668 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLEC4E
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1563,219,229 - 63,228,566 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CLEC4E
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1118,315,888 - 8,322,240 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl118,316,049 - 8,321,274 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666089414,308 - 420,182 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Clec4e
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248604,108,640 - 4,113,839 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248604,108,782 - 4,113,693 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Clec4e
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1624,065,388 - 24,071,072 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Clec4e
471 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:938
Count of miRNA genes:547
Interacting mature miRNAs:647
Transcripts:ENSMUST00000032239, ENSMUST00000175954, ENSMUST00000175995, ENSMUST00000176096, ENSMUST00000176443, ENSMUST00000176831, ENSMUST00000177367
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142079Skmw15_mskeletal muscle weight 15 (mouse)Not determined6116829851149588044Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683690851146954059Mouse
11252138Clas1_mcarcinogen-induced lung adenoma susceptibility 1 (mouse)6112246918146954059Mouse
1300887Pabr1_mplasma apolipoprotein B (human) regulator 1 (mouse)Not determined6103754405136400690Mouse
1301915Chab3_mcholesterol absorption 3 (mouse)Not determined698908709132916997Mouse
1301083Bhr5_mbronchial hyperresponsiveness 5 (mouse)Not determined6115694477132578150Mouse
1301658Radpf3_mradiation pulmonary fibrosis 3 (mouse)Not determined6115219814146330736Mouse
10043923Bhr7_mbronchial hyperresponsiveness 7 (mouse)Not determined698219814132219938Mouse
4141940W6q5_mweight 6 weeks QTL 5 (mouse)Not determined96632912146535124Mouse
4140980Mvwf2_mmodifier of von Willebrand factor 2 (mouse)Not determined114345693145601739Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46912919136400690Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648696934125336963Mouse
4141295Rua_mraffinose acetate tasting (mouse)Not determined115546805149549364Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648696934148351498Mouse
1301509Sluc3_msusceptibility to lung cancer 3 (mouse)Not determined6104480321127019938Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648703490125333748Mouse
1301518Bbaa5_mB.burgdorferi-associated arthritis 5 (mouse)Not determined698483798145881170Mouse
11353842Bmiq4_mbody mass index QTL 4 (mouse)692584287146330736Mouse
1302131Bmd8_mbone mineral density 8 (mouse)Not determined699132089133132228Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645290993128811995Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
1357555Tesq2_mtestis weight QTL 2 (mouse)Not determined696632912146535124Mouse
10043891Tilss4_mTNF-induced lethal shock susceptibility 3 (mouse)Not determined6112246918125333748Mouse
1301244Ichs_mimmediate cutaneous hypersensitivity QTL (mouse)Not determined690772571124772807Mouse
4142416Egq11_mearly growth QTL 11 (mouse)Not determined96632912146535124Mouse
1301923Lith6_mlithogenic gene 6 (mouse)Not determined698694477132694676Mouse
10412207Cypr5_mcytokine production 5 (mouse)Not determined6110815180144815323Mouse
1300704Cia3_mcollagen induced arthritis QTL 3 (mouse)Not determined696324286130324483Mouse
1301152Athsq2_matherosclerosis susceptibility QTL 2 (mouse)Not determined6117059949149588044Mouse
13463481Mcvq14_mmean corpuscular volume QTL 14 (mouse)6111142448145142541Mouse
1301927Etohcta6_methanol conditioned taste aversion 6 (mouse)Not determined6115578005149578150Mouse
4141194Cyx_mcycloheximide tasting (mouse)Not determined115546805149549364Mouse
4141064Ath37_matherosclerosis 37 (mouse)Not determined6116641858128495988Mouse
1357806Aaj3_manxiety in A/J 3 (mouse)Not determined6104480321136400690Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673476983134676963Mouse
4141889Qui_mquinine sensitivity, taste (mouse)Not determined115546805149549364Mouse
1301292Cfbw2_mcystic fibrosis body weight 2 (mouse)Not determined694981612128981699Mouse
11040599Lmr4b_mleishmaniasis resistance 4b (mouse)696324286130324483Mouse
1301804Bulb2_mbulb size 2 (mouse)Not determined6120416806149588044Mouse

Markers in Region
RH127282  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386123,282,702 - 123,282,943UniSTSGRCm38
MGSCv376123,232,720 - 123,232,961UniSTSGRCm37
Celera6125,080,348 - 125,080,589UniSTS
Cytogenetic Map6F3UniSTS
cM Map659.6UniSTS
C86253  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386123,282,730 - 123,282,951UniSTSGRCm38
MGSCv376123,232,748 - 123,232,969UniSTSGRCm37
Celera6125,080,376 - 125,080,597UniSTS
Cytogenetic Map6F3UniSTS
cM Map659.6UniSTS
Whitehead/MRC_RH61235.47UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_019948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017321688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB024717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB024719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC124563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK089286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK156437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC003218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT010223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000032239   ⟹   ENSMUSP00000032239
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6123,258,748 - 123,266,829 (-)Ensembl
GRCm38.p6 Ensembl6123,281,789 - 123,289,870 (-)Ensembl
Ensembl Acc Id: ENSMUST00000175954
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6123,264,736 - 123,266,829 (-)Ensembl
GRCm38.p6 Ensembl6123,287,777 - 123,289,870 (-)Ensembl
Ensembl Acc Id: ENSMUST00000175995
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6123,259,104 - 123,266,829 (-)Ensembl
GRCm38.p6 Ensembl6123,282,145 - 123,289,870 (-)Ensembl
Ensembl Acc Id: ENSMUST00000176096   ⟹   ENSMUSP00000135682
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6123,260,653 - 123,266,825 (-)Ensembl
GRCm38.p6 Ensembl6123,283,694 - 123,289,866 (-)Ensembl
Ensembl Acc Id: ENSMUST00000176443
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6123,258,908 - 123,266,828 (-)Ensembl
GRCm38.p6 Ensembl6123,281,949 - 123,289,869 (-)Ensembl
Ensembl Acc Id: ENSMUST00000176831
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6123,259,627 - 123,266,829 (-)Ensembl
GRCm38.p6 Ensembl6123,282,668 - 123,289,870 (-)Ensembl
Ensembl Acc Id: ENSMUST00000177367   ⟹   ENSMUSP00000135081
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6123,260,450 - 123,266,829 (-)Ensembl
GRCm38.p6 Ensembl6123,283,491 - 123,289,870 (-)Ensembl
RefSeq Acc Id: NM_019948   ⟹   NP_064332
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396123,258,748 - 123,266,830 (-)NCBI
GRCm386123,281,789 - 123,289,871 (-)ENTREZGENE
MGSCv376123,231,807 - 123,239,889 (-)RGD
Celera6125,079,435 - 125,087,544 (-)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_017321688   ⟹   XP_017177177
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396123,259,626 - 123,266,602 (-)NCBI
GRCm386123,282,667 - 123,288,880 (-)NCBI
Sequence:
RefSeq Acc Id: NP_064332   ⟸   NM_019948
- UniProtKB: Q9R0Q8 (UniProtKB/Swiss-Prot),   Q4FK29 (UniProtKB/TrEMBL),   H3BJQ5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017177177   ⟸   XM_017321688
- Peptide Label: isoform X1
- UniProtKB: Q3U271 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000032239   ⟸   ENSMUST00000032239
Ensembl Acc Id: ENSMUSP00000135081   ⟸   ENSMUST00000177367
Ensembl Acc Id: ENSMUSP00000135682   ⟸   ENSMUST00000176096
Protein Domains
C-type lectin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9R0Q8-F1-model_v2 AlphaFold Q9R0Q8 1-214 view protein structure

Promoters
RGD ID:6839094
Promoter ID:MM_KWN:47508
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour
Transcripts:NM_019948,   UC009DQL.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv366123,239,419 - 123,239,919 (-)MPROMDB
RGD ID:6890948
Promoter ID:EPDNEW_M8925
Type:single initiation site
Name:Clec4e_2
Description:Mus musculus C-type lectin domain family 4, member e , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8926  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm386123,287,039 - 123,287,099EPDNEW
RGD ID:6890950
Promoter ID:EPDNEW_M8926
Type:initiation region
Name:Clec4e_1
Description:Mus musculus C-type lectin domain family 4, member e , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8925  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm386123,289,870 - 123,289,930EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1861232 AgrOrtholog
Ensembl Genes ENSMUSG00000030142 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000032239 ENTREZGENE
  ENSMUST00000032239.11 UniProtKB/Swiss-Prot
Gene3D-CATH 3.10.100.10 UniProtKB/Swiss-Prot
InterPro C-type_lectin-like UniProtKB/Swiss-Prot
  C-type_lectin-like/link_sf UniProtKB/Swiss-Prot
  C-type_lectin/snaclec_domain UniProtKB/Swiss-Prot
  C-type_lectin_CS UniProtKB/Swiss-Prot
  CD209-like_CTLD UniProtKB/Swiss-Prot
  CTDL_fold UniProtKB/Swiss-Prot
KEGG Report mmu:56619 UniProtKB/Swiss-Prot
MGD MGI:1861232 ENTREZGENE
NCBI Gene 56619 ENTREZGENE
PANTHER MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED UniProtKB/Swiss-Prot
Pfam Lectin_C UniProtKB/Swiss-Prot
PhenoGen Clec4e PhenoGen
PROSITE C_TYPE_LECTIN_1 UniProtKB/Swiss-Prot
  C_TYPE_LECTIN_2 UniProtKB/Swiss-Prot
SMART CLECT UniProtKB/Swiss-Prot
Superfamily-SCOP SSF56436 UniProtKB/Swiss-Prot
UniProt CLC4E_MOUSE UniProtKB/Swiss-Prot
  H3BJQ5 ENTREZGENE, UniProtKB/TrEMBL
  H3BL75_MOUSE UniProtKB/TrEMBL
  Q3U271 ENTREZGENE, UniProtKB/TrEMBL
  Q4FK29 ENTREZGENE, UniProtKB/TrEMBL
  Q9R0Q8 ENTREZGENE