Zranb1 (zinc finger, RAN-binding domain containing 1) - Rat Genome Database

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Gene: Zranb1 (zinc finger, RAN-binding domain containing 1) Mus musculus
Analyze
Symbol: Zranb1
Name: zinc finger, RAN-binding domain containing 1
RGD ID: 1551093
MGI Page MGI
Description: Predicted to enable K63-linked polyubiquitin modification-dependent protein binding activity and cysteine-type deubiquitinase activity. Predicted to be involved in several processes, including positive regulation of Wnt signaling pathway; protein deubiquitination; and regulation of cell morphogenesis. Predicted to act upstream of or within Wnt signaling pathway and proteolysis. Predicted to be located in cytosol and nucleoplasm. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including brain; extraembryonic component; genitourinary system; and neural retina. Orthologous to human ZRANB1 (zinc finger RANBP2-type containing 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 9330160G10Rik; D7Wsu87; D7Wsu87e; DNA segment, Chr 7, Wayne State University 87, expressed; Gm1956; Trabid; TRAF-binding protein; ubiquitin thioesterase Zranb1; zinc finger Ran-binding domain-containing protein 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397132,532,905 - 132,588,127 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7132,532,871 - 132,588,120 (+)EnsemblGRCm39 Ensembl
GRCm387132,931,176 - 132,986,398 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7132,931,142 - 132,986,391 (+)EnsemblGRCm38mm10GRCm38
MGSCv377140,141,305 - 140,175,634 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367132,787,965 - 132,822,294 (+)NCBIMGSCv36mm8
Celera7132,755,614 - 132,789,937 (+)NCBICelera
Cytogenetic Map7F3NCBI
cM Map776.32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome. Ko MS, etal., Hum Mol Genet 1998 Nov;7(12):1967-78.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12838346   PMID:12904583   PMID:14610273   PMID:15226823   PMID:16141072  
PMID:16141073   PMID:18281465   PMID:18287559   PMID:18799693   PMID:21267068   PMID:21873635   PMID:22383091   PMID:26808229   PMID:27626380   PMID:28190767   PMID:30713523   PMID:30973865  
PMID:32325033   PMID:33853758   PMID:36087511   PMID:37237031   PMID:38355793  


Genomics

Comparative Map Data
Zranb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397132,532,905 - 132,588,127 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7132,532,871 - 132,588,120 (+)EnsemblGRCm39 Ensembl
GRCm387132,931,176 - 132,986,398 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7132,931,142 - 132,986,391 (+)EnsemblGRCm38mm10GRCm38
MGSCv377140,141,305 - 140,175,634 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367132,787,965 - 132,822,294 (+)NCBIMGSCv36mm8
Celera7132,755,614 - 132,789,937 (+)NCBICelera
Cytogenetic Map7F3NCBI
cM Map776.32NCBI
ZRANB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810124,916,894 - 124,988,189 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10124,942,123 - 124,988,189 (+)EnsemblGRCh38hg38GRCh38
GRCh3710126,630,692 - 126,676,758 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3610126,620,682 - 126,665,995 (+)NCBINCBI36Build 36hg18NCBI36
Build 3410126,620,681 - 126,663,759NCBI
Celera10120,404,500 - 120,449,814 (+)NCBICelera
Cytogenetic Map10q26.13NCBI
HuRef10120,317,070 - 120,363,002 (+)NCBIHuRef
CHM1_110126,912,463 - 126,957,768 (+)NCBICHM1_1
T2T-CHM13v2.010125,823,167 - 125,869,209 (+)NCBIT2T-CHM13v2.0
Zranb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81197,155,048 - 197,211,518 (+)NCBIGRCr8
mRatBN7.21187,725,354 - 187,780,129 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1187,724,320 - 187,779,655 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01204,938,444 - 205,000,163 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1204,959,174 - 204,998,019 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01211,931,252 - 211,991,353 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41192,458,649 - 192,461,208 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1185,469,920 - 185,525,817 (+)NCBICelera
Cytogenetic Map1q41NCBI
Zranb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554772,873,170 - 2,922,069 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554772,864,737 - 2,922,069 (+)NCBIChiLan1.0ChiLan1.0
ZRANB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28136,766,528 - 136,837,960 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110136,772,160 - 136,843,311 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v010121,477,916 - 121,549,296 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110125,766,209 - 125,814,015 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10125,766,178 - 125,814,768 (+)Ensemblpanpan1.1panPan2
ZRANB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12834,220,596 - 34,259,642 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2834,220,596 - 34,256,620 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2834,264,304 - 34,321,513 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02834,759,763 - 34,817,033 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2834,718,820 - 34,814,205 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12834,316,924 - 34,374,155 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02834,308,002 - 34,365,164 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02834,560,074 - 34,617,303 (+)NCBIUU_Cfam_GSD_1.0
Zranb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721312,390,881 - 12,439,746 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648613,135,740 - 13,170,462 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648613,135,759 - 13,170,462 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZRANB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14134,254,000 - 134,329,064 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114134,253,927 - 134,327,835 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214145,804,215 - 145,880,481 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZRANB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19117,561,468 - 117,634,226 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl9117,561,226 - 117,631,817 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604878,918,277 - 78,989,747 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zranb1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473722,165,011 - 22,228,635 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473722,168,025 - 22,228,990 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Zranb1
2075 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1085
Count of miRNA genes:582
Interacting mature miRNAs:725
Transcripts:ENSMUST00000033265, ENSMUST00000106157, ENSMUST00000153335
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357460Vtbt4_mvertebral trabecular bone trait 4 (mouse)Not determined7101693381135693530Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
11059562Lmr21b_mleishmaniasis resistance 21b (mouse)7110967235144967336Mouse
1302032Alcp12_malcohol preference locus 12 (mouse)Not determined7111166122144995196Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
1301590Pbwg3_mpostnatal body weight growth 3 (mouse)Not determined7127311241144995196Mouse
1300566Sluc8_msusceptibility to lung cancer 8 (mouse)Not determined7127398151144995196Mouse
11039524Tbbr3_mTrypanosoma brucei brucei response 3 (mouse)7100750722134750843Mouse
14746988Manh63_mmandible shape 63 (mouse)7127735437144995196Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
4142444Femwf5_mfemur work to failure 5 (mouse)Not determined112552248144995196Mouse
1301447Fembm3_mfemoral bone morphometry 3 (mouse)Not determined7100993261134993342Mouse
10412104Tons2_mtongue size 2 (mouse)Not determined799837716133837716Mouse
1300677Bmd9_mbone mineral density 9 (mouse)Not determined7116634089144995196Mouse
4142312Nilac4_mnicotine induced locomotor activity 4 (mouse)Not determined7102485219136485380Mouse
1300747Skts2_mskin tumor susceptibility 2 (mouse)Not determined7112922733144995196Mouse
1301898Alcp14_malcohol preference locus 14 (mouse)Not determined7111166122144995196Mouse
1357711Adbg1_madult body growth 1 (mouse)Not determined7118693381144398314Mouse
1301903Tlsm1_mthymic lymphoma susceptible 1 (mouse)Not determined7122250663135170901Mouse
10402499Lmr21_mleishmaniasis resistance 21 (mouse)Not determined7110967235144967336Mouse
1301773Stheal7_msoft tissue heal 7 (mouse)Not determined7119132573144995196Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773149748143153737Mouse
1301105Cfld4_mcystic fibrosis lung disease 4 (mouse)Not determined7101693381135693530Mouse
1300721Cfbw3_mcystic fibrosis body weight 3 (mouse)Not determined7101693381135693530Mouse
5491192Mobq1_mmultigenic obesity QTL 1 (mouse)Not determined7105250663139250811Mouse
14700684Civq1_mcerebral infarct volume QTL 1 (mouse)7109707335143707335Mouse
1300670Sluc19_msusceptibility to lung cancer 19 (mouse)Not determined7111166122144995196Mouse
14700687Civq5_mcerebral infarct volume QTL 5 (mouse)7109707335143707335Mouse
14700688Civq6_mcerebral infarct volume QTL 6 (mouse)7109707335143707335Mouse
26884398Humsd6_mhumerus midshaft diameter 6, 16 week (mouse)778649748136901729Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
13524852Asrq7a_macoustic startle response 7a (mouse)7105350008139350008Mouse
15092059Wogrme1_mweek one growth rate, maternal effect 1 (mouse)7117199227134101729Mouse

Markers in Region
D7Wsu87e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387132,983,900 - 132,984,149UniSTSGRCm38
GRCm38346,621,316 - 46,621,564UniSTSGRCm38
MGSCv37346,425,238 - 46,425,486UniSTSGRCm37
MGSCv377140,175,583 - 140,175,832UniSTSGRCm37
Celera7132,789,886 - 132,790,135UniSTS
Celera346,257,615 - 46,257,863UniSTS
Cytogenetic Map7F3UniSTS
cM Map765.6UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001362198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001362199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_207302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_155454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_163812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006507969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011241837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC119806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ250693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK005926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK010069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK020376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK140426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BN000126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000033265   ⟹   ENSMUSP00000033265
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7132,551,313 - 132,585,725 (+)Ensembl
GRCm38.p6 Ensembl7132,949,584 - 132,983,996 (+)Ensembl
Ensembl Acc Id: ENSMUST00000106157   ⟹   ENSMUSP00000101763
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7132,532,871 - 132,588,120 (+)Ensembl
GRCm38.p6 Ensembl7132,931,142 - 132,986,391 (+)Ensembl
Ensembl Acc Id: ENSMUST00000153335
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7132,582,588 - 132,584,495 (+)Ensembl
GRCm38.p6 Ensembl7132,980,859 - 132,982,766 (+)Ensembl
Ensembl Acc Id: ENSMUST00000210507   ⟹   ENSMUSP00000147317
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7132,551,313 - 132,585,725 (+)Ensembl
GRCm38.p6 Ensembl7132,949,584 - 132,983,996 (+)Ensembl
Ensembl Acc Id: ENSMUST00000215716   ⟹   ENSMUSP00000148867
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7132,549,897 - 132,585,680 (+)Ensembl
GRCm38.p6 Ensembl7132,948,168 - 132,983,951 (+)Ensembl
RefSeq Acc Id: NM_001362198   ⟹   NP_001349127
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397132,532,905 - 132,588,120 (+)NCBI
GRCm387132,931,176 - 132,986,391 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001362199   ⟹   NP_001349128
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397132,547,371 - 132,588,120 (+)NCBI
GRCm387132,945,642 - 132,986,391 (+)NCBI
Sequence:
RefSeq Acc Id: NM_207302   ⟹   NP_997185
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397132,532,905 - 132,588,120 (+)NCBI
GRCm387132,931,176 - 132,986,391 (+)NCBI
MGSCv377140,141,305 - 140,175,634 (+)RGD
Celera7132,755,614 - 132,789,937 (+)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_155454
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397132,547,371 - 132,588,127 (+)NCBI
GRCm387132,945,642 - 132,986,398 (+)NCBI
Sequence:
RefSeq Acc Id: NR_163812
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397132,547,371 - 132,588,120 (+)NCBI
GRCm387132,945,642 - 132,986,391 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006507969   ⟹   XP_006508032
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397132,533,191 - 132,588,123 (+)NCBI
GRCm387132,931,462 - 132,986,394 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011241837   ⟹   XP_011240139
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397132,532,969 - 132,588,123 (+)NCBI
GRCm387132,931,467 - 132,986,394 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036153193   ⟹   XP_036009086
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397132,533,187 - 132,584,229 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036153194   ⟹   XP_036009087
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397132,533,187 - 132,588,123 (+)NCBI
Sequence:
RefSeq Acc Id: NP_997185   ⟸   NM_207302
- Peptide Label: isoform 1
- UniProtKB: Q7M760 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006508032   ⟸   XM_006507969
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_011240139   ⟸   XM_011241837
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: NP_001349127   ⟸   NM_001362198
- Peptide Label: isoform 2
- UniProtKB: A0A1L1SQ24 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001349128   ⟸   NM_001362199
- Peptide Label: isoform 2
- UniProtKB: A0A1L1SQ24 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000147317   ⟸   ENSMUST00000210507
Ensembl Acc Id: ENSMUSP00000033265   ⟸   ENSMUST00000033265
Ensembl Acc Id: ENSMUSP00000101763   ⟸   ENSMUST00000106157
Ensembl Acc Id: ENSMUSP00000148867   ⟸   ENSMUST00000215716
RefSeq Acc Id: XP_036009087   ⟸   XM_036153194
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036009086   ⟸   XM_036153193
- Peptide Label: isoform X1
- UniProtKB: A0A1B0GQZ6 (UniProtKB/TrEMBL)
Protein Domains
OTU   RanBP2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q7M760-F1-model_v2 AlphaFold Q7M760 1-708 view protein structure

Promoters
RGD ID:8665867
Promoter ID:EPDNEW_M10965
Type:multiple initiation site
Name:Zranb1_1
Description:Mus musculus zinc finger, RAN-binding domain containing 1 , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm387132,931,237 - 132,931,297EPDNEW
RGD ID:6842455
Promoter ID:MM_KWN:53006
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:NM_207302
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367140,141,751 - 140,142,251 (+)MPROMDB
RGD ID:6842456
Promoter ID:MM_KWN:53007
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:OTTMUST00000063202
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367140,171,786 - 140,172,286 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:106441 AgrOrtholog
Ensembl Genes ENSMUSG00000030967 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000033265.5 UniProtKB/Swiss-Prot
  ENSMUST00000106157 ENTREZGENE
  ENSMUST00000106157.8 UniProtKB/Swiss-Prot
  ENSMUST00000210507 ENTREZGENE
  ENSMUST00000210507.2 UniProtKB/TrEMBL
  ENSMUST00000215716 ENTREZGENE
  ENSMUST00000215716.2 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.560 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Zinc finger, RanBP2-type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro AnkUBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  OTU_Deubiquitinase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  OTU_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RanBP2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RanBP2_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZRANB1_OTU UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:360216 UniProtKB/Swiss-Prot
MGD MGI:106441 ENTREZGENE
NCBI Gene Zranb1 ENTREZGENE
PANTHER UBIQUITIN THIOESTERASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBIQUITIN THIOESTERASE ZRANB1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam AnkUBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  OTU UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-RanBP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Zranb1 PhenoGen
PROSITE OTU UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_RANBP2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_RANBP2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ZnF_RBZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF90209 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1B0GQZ6 ENTREZGENE, UniProtKB/TrEMBL
  A0A1L1SQ24 ENTREZGENE, UniProtKB/TrEMBL
  Q3TQH3_MOUSE UniProtKB/TrEMBL
  Q3USF2_MOUSE UniProtKB/TrEMBL
  Q7M760 ENTREZGENE
  Q9ER82_MOUSE UniProtKB/TrEMBL
  ZRAN1_MOUSE UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-08-21 Zranb1  zinc finger, RAN-binding domain containing 1  D7Wsu87e  DNA segment, Chr 7, Wayne State University 87, expressed  Symbol and/or name change 5135510 APPROVED
2024-08-21 D7Wsu87e  DNA segment, Chr 7, Wayne State University 87, expressed  Zranb1  zinc finger, RAN-binding domain containing 1  Symbol and/or name change 5135510 APPROVED