Dner (delta/notch-like EGF repeat containing) - Rat Genome Database

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Gene: Dner (delta/notch-like EGF repeat containing) Mus musculus
Analyze
Symbol: Dner
Name: delta/notch-like EGF repeat containing
RGD ID: 1550695
MGI Page MGI
Description: Enables Notch binding activity. Acts upstream of or within Notch receptor processing; glial cell differentiation; and skeletal muscle fiber development. Located in dendrite and neuronal cell body. Is expressed in several structures, including alimentary system; central nervous system; limb; peripheral nervous system ganglion; and sensory organ. Orthologous to human DNER (delta/notch like EGF repeat containing).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: A930026D19Rik; BET; brain EGF repeat-containing transmembrane protein; Bret; delta and Notch-like epidermal growth factor-related receptor; delta/notch-like EGF-related receptor; MGC39059; transmembrane protein Bet
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39184,347,560 - 84,673,942 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl184,347,560 - 84,673,942 (-)EnsemblGRCm39 Ensembl
GRCm38184,369,839 - 84,696,221 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl184,369,839 - 84,696,221 (-)EnsemblGRCm38mm10GRCm38
MGSCv37184,366,414 - 84,692,796 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36184,248,864 - 84,575,246 (-)NCBIMGSCv36mm8
Celera184,429,076 - 84,756,047 (-)NCBICelera
Cytogenetic Map1C5NCBI
cM Map143.4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (ISO)
1-nitropyrene  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-palmitoylglycerol  (ISO)
3,4-dichloroaniline  (ISO)
3-Chloro-4-(dichloromethyl)-5-hydroxy-2(5H)-furanone  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (ISO)
8-Br-cAMP  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (EXP,ISO)
amitrole  (ISO)
amphetamine  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (EXP,ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
Butylbenzyl phthalate  (EXP)
cadmium atom  (EXP)
cadmium dichloride  (EXP)
calcitriol  (ISO)
cannabidiol  (ISO)
CGP 52608  (ISO)
chromium atom  (ISO)
cisplatin  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
dibutyl phthalate  (EXP)
diclofenac  (EXP)
diethyl phthalate  (EXP)
diisobutyl phthalate  (EXP)
diisononyl phthalate  (EXP)
dioxygen  (ISO)
diuron  (ISO)
Domiphen bromide  (ISO)
dorsomorphin  (ISO)
endosulfan  (ISO)
entinostat  (ISO)
epichlorohydrin  (ISO)
ethanol  (EXP)
ferroheme b  (EXP)
folic acid  (EXP)
genistein  (EXP)
glyphosate  (ISO)
heme b  (EXP)
hydroquinone  (ISO)
ivermectin  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
medroxyprogesterone acetate  (ISO)
methimazole  (ISO)
methoxychlor  (ISO)
mono(2-ethylhexyl) phthalate  (EXP,ISO)
N-methyl-4-phenylpyridinium  (ISO)
nickel atom  (ISO)
panobinostat  (ISO)
paracetamol  (ISO)
phenylmercury acetate  (ISO)
phorbol 13-acetate 12-myristate  (EXP)
pioglitazone  (EXP)
potassium chromate  (ISO)
progesterone  (ISO)
propanal  (ISO)
SB 431542  (ISO)
serpentine asbestos  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (EXP,ISO)
sulfadimethoxine  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
testosterone  (EXP)
thiram  (ISO)
titanium dioxide  (EXP)
trichostatin A  (ISO)
triptonide  (EXP)
troglitazone  (ISO)
valproic acid  (ISO)
vinclozolin  (ISO)
vorinostat  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
dendrite  (IDA,ISO)
early endosome  (IEA,ISO)
neuronal cell body  (IDA)
plasma membrane  (ISO,TAS)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Delta/notch-like epidermal growth factor (EGF)-related receptor, a novel EGF-like repeat-containing protein targeted to dendrites of developing and adult central nervous system neurons. Eiraku M, etal., J Biol Chem 2002 Jul 12;277(28):25400-7. Epub 2002 Apr 11.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. BET, a novel neuronal transmembrane protein with multiple EGF-like motifs. Nishizumi H, etal., Neuroreport 2002 May 7;13(6):909-15.
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:15489334   PMID:15965470   PMID:15965977   PMID:16141072   PMID:16141073   PMID:16298139  
PMID:18287559   PMID:18474614   PMID:20058045   PMID:21031554   PMID:21267068   PMID:21873635   PMID:21947380   PMID:22442722   PMID:23431145   PMID:24154525   PMID:24194600   PMID:24952961  
PMID:26494785   PMID:27329940   PMID:27626380   PMID:28233801   PMID:28558017   PMID:29071714   PMID:29207144   PMID:29799838   PMID:30703359   PMID:31060902   PMID:31152445   PMID:34321999  
PMID:34508829   PMID:34851821   PMID:35401533   PMID:35577801   PMID:37223028   PMID:38355793   PMID:38553003  


Genomics

Comparative Map Data
Dner
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39184,347,560 - 84,673,942 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl184,347,560 - 84,673,942 (-)EnsemblGRCm39 Ensembl
GRCm38184,369,839 - 84,696,221 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl184,369,839 - 84,696,221 (-)EnsemblGRCm38mm10GRCm38
MGSCv37184,366,414 - 84,692,796 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36184,248,864 - 84,575,246 (-)NCBIMGSCv36mm8
Celera184,429,076 - 84,756,047 (-)NCBICelera
Cytogenetic Map1C5NCBI
cM Map143.4NCBI
DNER
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382229,357,629 - 229,714,555 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2229,357,629 - 229,714,555 (-)EnsemblGRCh38hg38GRCh38
GRCh372230,222,345 - 230,579,271 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362229,930,589 - 230,287,530 (-)NCBINCBI36Build 36hg18NCBI36
Celera2223,997,841 - 224,354,753 (-)NCBICelera
Cytogenetic Map2q36.3NCBI
HuRef2222,063,233 - 222,419,423 (-)NCBIHuRef
CHM1_12230,228,171 - 230,585,124 (-)NCBICHM1_1
T2T-CHM13v2.02229,840,190 - 230,197,123 (-)NCBIT2T-CHM13v2.0
Dner
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8993,035,108 - 93,350,568 (-)NCBIGRCr8
mRatBN7.2985,586,985 - 85,902,461 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl985,586,987 - 85,902,637 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx994,015,224 - 94,317,755 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0999,143,722 - 99,446,238 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0997,530,682 - 97,831,070 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0991,965,866 - 92,291,172 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl991,965,866 - 92,291,220 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0991,700,319 - 92,023,695 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4983,716,070 - 83,821,294 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1983,899,837 - 84,004,713 (-)NCBI
Celera983,016,881 - 83,326,945 (-)NCBICelera
Cytogenetic Map9q35NCBI
Dner
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554535,307,256 - 5,615,609 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554535,307,256 - 5,615,550 (+)NCBIChiLan1.0ChiLan1.0
DNER
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213131,978,893 - 132,337,732 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B131,993,860 - 132,352,692 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B116,604,193 - 116,963,026 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B235,409,108 - 235,642,158 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B235,409,108 - 235,642,161 (-)Ensemblpanpan1.1panPan2
DNER
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12541,709,570 - 41,887,705 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2541,710,420 - 42,019,885 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2542,333,402 - 42,646,081 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02541,964,886 - 42,276,304 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2541,964,888 - 42,276,509 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12541,894,543 - 42,207,390 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02541,734,881 - 42,047,810 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02541,908,081 - 42,221,461 (-)NCBIUU_Cfam_GSD_1.0
Dner
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303183,901,774 - 184,204,798 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365256,735,049 - 7,037,042 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365256,734,924 - 7,037,947 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DNER
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15130,415,061 - 130,754,048 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115130,414,159 - 130,754,043 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215144,454,568 - 144,601,085 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DNER
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110115,357,097 - 115,739,992 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10115,357,084 - 115,739,777 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604083,717,051 - 84,079,196 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dner
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248433,237,270 - 3,552,551 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248433,238,390 - 3,552,566 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Dner
15410 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:254
Count of miRNA genes:185
Interacting mature miRNAs:214
Transcripts:ENSMUST00000049126
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1357847Jckm2_mjuvenile cystic kidney modifier 2 (mouse)Not determined174991977133290937Mouse
4142394Mssq1_mmandible size and shape QTL 1 (mouse)Not determined73615692107615830Mouse
4141625Emo4_memotionality 4 (mouse)Not determined6807134586235027Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
1558928Mord2_mmodifier of retinal degeneration 2 (mouse)Not determined177123115110536075Mouse
25394564Skmw49_mskeletal muscle weight 49, TA (mouse)18342011988552630Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
14697706Stsl3a_mSalmonella typhimurium susceptibility locus 3a (mouse)17747663795827725Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139132808126445310Mouse
1302146Cocrb1_mcocaine related behavior 1 (mouse)Not determined170133533104139557Mouse
14696691Malq1_mmean attack latency QTL 1 (mouse)17797663787927722Mouse
14696692Tavq1_mtotal attack value QTL 1 (mouse)18197771588427722Mouse
14696693Avd2q1_mattack value day 2 QTL 1 (mouse)17897771790927722Mouse
14746998Mancz1_mmandible centroid size 1 (mouse)15794135191941351Mouse
1300746Skl1_mskeletal size (tail length) 1 (mouse)Not determined15799197791992080Mouse
1302029Sst1_msusceptibility to tuberculosis 1 (mouse)Not determined18165211487130822Mouse
12791004Aath7_maortic arch atherosclerosis 7 (mouse)182832635116832635Mouse
4141725Wbcq4_mwhite blood cell quantitative locus 4 (mouse)Not determined179858683113858791Mouse
12050069Nabq1_mnasal bone morphology QTL 1 (mouse)179858683113858791Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
10043965Obq24_mobesity QTL 24 (mouse)Not determined15089021684890216Mouse
13452395Leusq2_mleucocytosis susceptibility QTL 2 (mouse)180245593126386517Mouse
1558717Ses1a_msalmonella enteritidis susceptibility 1a (mouse)Not determined15672692290727077Mouse
1301304Hrq3_mheart rate quantitative locus 3 (mouse)Not determined173615692107615830Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1301667Lxw5_mlupus BXSB x NZW 5 (mouse)Not determined15854919192549443Mouse
1357741Nidd5k_mNidd5 on KK-A<y> (mouse)Not determined15597494889975057Mouse
1301162Skull1_mskull morphology 1 (mouse)Not determined15799197791992080Mouse
4142467Wbcq1_mwhite blood cell quantitative locus 1 (mouse)Not determined15626621490266360Mouse
1301933Insq6_minsulin QTL 6 (mouse)Not determined15672692290727077Mouse
4141305Tgq9_mtriglyceride QTL 9 (mouse)Not determined5142160585421605Mouse
1300821Lore1_mloss of righting induced by ethanol 1 (mouse)Not determined17554919192941077Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
10412238Alpq5_malcohol preference QTL 5 (mouse)Not determined182832635116832635Mouse
1357505Vtbt1_mvertebral trabecular bone trait 1 (mouse)Not determined15626621490266360Mouse
1301444Alcw5_malcohol withdrawal 5 (mouse)Not determined15854919192549443Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
14747009Manh49_mmandible shape 49 (mouse)15794135191941351Mouse
1300976Bmd19_mbone mineral density 19 (mouse)Not determined173266214108838414Mouse
4141914Gcsfis_mG-CSF induced splenomegaly (mouse)Not determined74516235148715579Mouse
27095928Pglq6_mpelvic girdle length QTL 6, 10 week (mouse)175976637148775742Mouse
27095931Pglq1_mpelvic girdle length QTL 1, 5 week (mouse)175976637128527737Mouse
1301748Abbp1_mA/J and C57BL/6 blood pressure 1 (mouse)Not determined162946755120529678Mouse
1357439Popoa_mpremature ovulation and primary oocyte arrest (mouse)Not determined182643189135615379Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
1300989Lrdg1_mlight induced retinal degeneration 1 (mouse)Not determined173755175147125370Mouse
27095918Ulnl1_mulna length 1, 5 week (mouse)167339159129727737Mouse
1302119Cia15_mcollagen induced arthritis 15 (mouse)Not determined16588900688496101Mouse
1301350Nidd4k_mNidd4 on KK-A (mouse)Not determined782291982147125370Mouse
1300841Ssial1_msusceptibility to sialadenitis 1 (mouse)Not determined163920002153557562Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)175976637181327565Mouse
1357679Egrm1_mearly growth rate, maternal effect 1 (mouse)Not determined15799197791992080Mouse

Markers in Region
D1Mit438  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38184,577,256 - 84,577,377UniSTSGRCm38
MGSCv37184,573,831 - 84,573,952UniSTSGRCm37
Celera184,636,099 - 84,636,218UniSTS
Cytogenetic Map1C5UniSTS
cM Map151.8UniSTS
Whitehead Genetic150.3UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_152915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB067650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC100531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC122563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC123882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC137849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF370126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK044597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY032924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC022636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC034634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC116231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC128476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000049126   ⟹   ENSMUSP00000042927
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl184,347,560 - 84,673,942 (-)Ensembl
GRCm38.p6 Ensembl184,369,839 - 84,696,221 (-)Ensembl
Ensembl Acc Id: ENSMUST00000185606   ⟹   ENSMUSP00000140986
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl184,558,436 - 84,618,206 (-)Ensembl
GRCm38.p6 Ensembl184,580,715 - 84,640,485 (-)Ensembl
Ensembl Acc Id: ENSMUST00000191306
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl184,511,665 - 84,673,740 (-)Ensembl
GRCm38.p6 Ensembl184,533,944 - 84,696,019 (-)Ensembl
Ensembl Acc Id: ENSMUST00000191546   ⟹   ENSMUSP00000140662
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl184,560,725 - 84,601,562 (-)Ensembl
GRCm38.p6 Ensembl184,583,004 - 84,623,841 (-)Ensembl
RefSeq Acc Id: NM_152915   ⟹   NP_690879
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39184,347,560 - 84,673,942 (-)NCBI
GRCm38184,369,839 - 84,696,221 (-)ENTREZGENE
MGSCv37184,366,414 - 84,692,796 (-)RGD
Celera184,429,076 - 84,756,047 (-)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_690879   ⟸   NM_152915
- Peptide Label: precursor
- UniProtKB: Q8R4T6 (UniProtKB/Swiss-Prot),   Q8R226 (UniProtKB/Swiss-Prot),   Q3U697 (UniProtKB/Swiss-Prot),   Q8VD97 (UniProtKB/Swiss-Prot),   Q8JZM4 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000042927   ⟸   ENSMUST00000049126
Ensembl Acc Id: ENSMUSP00000140662   ⟸   ENSMUST00000191546
Ensembl Acc Id: ENSMUSP00000140986   ⟸   ENSMUST00000185606
Protein Domains
EGF-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8JZM4-F1-model_v2 AlphaFold Q8JZM4 1-737 view protein structure

Promoters
RGD ID:6817607
Promoter ID:MM_KWN:1370
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:NM_152915,   UC007BSX.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36184,692,086 - 84,692,586 (-)MPROMDB
RGD ID:6874264
Promoter ID:EPDNEW_M582
Type:initiation region
Name:Dner_2
Description:Mus musculus delta/notch-like EGF repeat containing , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M583  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38184,695,828 - 84,695,888EPDNEW
RGD ID:6874266
Promoter ID:EPDNEW_M583
Type:initiation region
Name:Dner_1
Description:Mus musculus delta/notch-like EGF repeat containing , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M582  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38184,696,196 - 84,696,256EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2152889 AgrOrtholog
Ensembl Genes ENSMUSG00000036766 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000049126 ENTREZGENE
  ENSMUST00000049126.13 UniProtKB/Swiss-Prot
  ENSMUST00000185606.3 UniProtKB/TrEMBL
  ENSMUST00000191546.3 UniProtKB/TrEMBL
Gene3D-CATH Laminin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro DNER_C UniProtKB/Swiss-Prot
  EGF-like_Ca-bd_dom UniProtKB/Swiss-Prot
  EGF-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF-type_Asp/Asn_hydroxyl_site UniProtKB/Swiss-Prot
  EGF_Ca-bd_CS UniProtKB/Swiss-Prot
  Growth_fac_rcpt_cys_sf UniProtKB/Swiss-Prot
  Notch_Cell-Fate_Det UniProtKB/Swiss-Prot
KEGG Report mmu:227325 UniProtKB/Swiss-Prot
MGD MGI:2152889 ENTREZGENE
NCBI Gene 227325 ENTREZGENE
PANTHER CRUMBS FAMILY MEMBER UniProtKB/Swiss-Prot
Pfam DNER_C UniProtKB/Swiss-Prot
  EGF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Dner PhenoGen
PRINTS EGFBLOOD UniProtKB/Swiss-Prot
PROSITE ASX_HYDROXYL UniProtKB/Swiss-Prot
  EGF_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF_CA UniProtKB/Swiss-Prot
SMART EGF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF_CA UniProtKB/Swiss-Prot
Superfamily-SCOP EGF/Laminin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF57184 UniProtKB/Swiss-Prot
UniProt A0A087WRJ8_MOUSE UniProtKB/TrEMBL
  A0A087WSC4_MOUSE UniProtKB/TrEMBL
  DNER_MOUSE UniProtKB/Swiss-Prot
  Q3U697 ENTREZGENE
  Q8JZM4 ENTREZGENE
  Q8R226 ENTREZGENE
  Q8R4T6 ENTREZGENE
  Q8VD97 ENTREZGENE
UniProt Secondary Q3U697 UniProtKB/Swiss-Prot
  Q8R226 UniProtKB/Swiss-Prot
  Q8R4T6 UniProtKB/Swiss-Prot
  Q8VD97 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-10-06 Dner  delta/notch-like EGF repeat containing    delta/notch-like EGF-related receptor  Symbol and/or name change 5135510 APPROVED