Synrg (synergin, gamma) - Rat Genome Database

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Gene: Synrg (synergin, gamma) Mus musculus
Analyze
Symbol: Synrg
Name: synergin, gamma
RGD ID: 1550690
MGI Page MGI
Description: Predicted to be involved in endocytosis and protein transport. Predicted to be located in several cellular components, including Golgi apparatus; clathrin-coated vesicle; and perinuclear region of cytoplasm. Predicted to be part of clathrin coat of trans-Golgi network vesicle. Is expressed in several structures, including cardiovascular system; gallbladder; genitourinary system; gut; and nervous system. Orthologous to human SYNRG (synergin gamma).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AF007009; AP1 gamma subunit binding protein 1; AP1 subunit gamma-binding protein 1; Ap1g; Ap1gbp1; C76297; EST AF007009; gamma-synergin; L71-; L71-5; synergin gamma; SYNG
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391183,855,217 - 83,935,404 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1183,855,254 - 83,935,404 (+)EnsemblGRCm39 Ensembl
GRCm381183,964,390 - 84,044,578 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1183,964,428 - 84,044,578 (+)EnsemblGRCm38mm10GRCm38
MGSCv371183,777,930 - 83,855,591 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361183,780,666 - 83,858,284 (+)NCBIMGSCv36mm8
Celera1193,569,471 - 93,647,214 (+)NCBICelera
Cytogenetic Map11CNCBI
cM Map1151.25NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
1-naphthyl isothiocyanate  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2-hydroxypropanoic acid  (ISO)
4,4'-diaminodiphenylmethane  (EXP,ISO)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
all-trans-retinoic acid  (ISO)
allethrin  (ISO)
amitrole  (ISO)
ammonium chloride  (ISO)
amphetamine  (ISO)
antirheumatic drug  (ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (ISO)
Brodifacoum  (ISO)
butanal  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbon nanotube  (EXP)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
clobetasol  (EXP)
coumarin  (ISO)
cyhalothrin  (ISO)
cypermethrin  (ISO)
decabromodiphenyl ether  (ISO)
Dibutyl phosphate  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
fenvalerate  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
FR900359  (ISO)
furan  (ISO)
hexadecanoic acid  (ISO)
hydrogen peroxide  (EXP)
levofloxacin  (ISO)
linsidomine  (ISO)
methimazole  (ISO)
methyl methanesulfonate  (ISO)
N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine  (ISO)
N-nitrosodiethylamine  (ISO)
nefazodone  (ISO)
nickel atom  (ISO)
oxaliplatin  (ISO)
ozone  (ISO)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (EXP)
pregnenolone 16alpha-carbonitrile  (ISO)
pyrethrins  (ISO)
rac-lactic acid  (ISO)
rotenone  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (ISO)
topotecan  (ISO)
triphenyl phosphate  (ISO)
trovafloxacin  (ISO)
tungsten  (EXP)
valproic acid  (ISO)
zinc sulfate  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:9618202   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12520002   PMID:12808037   PMID:12904583  
PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073   PMID:21677750   PMID:21873635   PMID:24194600   PMID:32325033   PMID:32554809   PMID:34321999   PMID:36417873   PMID:38355793  


Genomics

Comparative Map Data
Synrg
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391183,855,217 - 83,935,404 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1183,855,254 - 83,935,404 (+)EnsemblGRCm39 Ensembl
GRCm381183,964,390 - 84,044,578 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1183,964,428 - 84,044,578 (+)EnsemblGRCm38mm10GRCm38
MGSCv371183,777,930 - 83,855,591 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361183,780,666 - 83,858,284 (+)NCBIMGSCv36mm8
Celera1193,569,471 - 93,647,214 (+)NCBICelera
Cytogenetic Map11CNCBI
cM Map1151.25NCBI
SYNRG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381737,514,807 - 37,609,418 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1737,514,807 - 37,609,472 (-)EnsemblGRCh38hg38GRCh38
GRCh371735,874,910 - 35,969,466 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361732,952,046 - 33,043,559 (-)NCBINCBI36Build 36hg18NCBI36
Build 341732,952,045 - 33,043,559NCBI
Celera1732,697,883 - 32,792,525 (-)NCBICelera
Cytogenetic Map17q12NCBI
HuRef1731,812,168 - 31,906,906 (-)NCBIHuRef
CHM1_11735,906,360 - 36,001,001 (-)NCBICHM1_1
T2T-CHM13v2.01738,501,491 - 38,596,398 (-)NCBIT2T-CHM13v2.0
Synrg
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81069,346,154 - 69,428,714 (+)NCBIGRCr8
mRatBN7.21068,848,828 - 68,931,252 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1068,849,642 - 68,931,250 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1073,469,676 - 73,550,565 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01072,974,685 - 73,055,576 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01068,439,105 - 68,519,999 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01071,278,698 - 71,357,791 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01070,890,012 - 70,927,522 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01071,230,888 - 71,271,499 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41072,247,720 - 72,330,036 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11072,262,041 - 72,309,447 (+)NCBI
Celera1067,788,307 - 67,860,055 (+)NCBICelera
Cytogenetic Map10q26NCBI
Synrg
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955451438,904 - 510,136 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955451439,205 - 510,675 (+)NCBIChiLan1.0ChiLan1.0
SYNRG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21927,144,606 - 27,237,649 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11729,028,037 - 29,121,039 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01719,467,539 - 19,560,618 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11719,768,062 - 19,860,323 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1719,768,058 - 19,860,323 (+)Ensemblpanpan1.1panPan2
SYNRG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1937,280,620 - 37,365,477 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl937,280,645 - 37,366,116 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha936,505,186 - 36,589,564 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0938,091,575 - 38,176,008 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl938,091,575 - 38,176,037 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1936,872,387 - 36,956,768 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0937,159,961 - 37,244,338 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0937,246,724 - 37,331,356 (-)NCBIUU_Cfam_GSD_1.0
Synrg
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560236,235,031 - 36,298,157 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936490776,896 - 840,022 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936490776,939 - 840,019 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SYNRG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1238,975,916 - 39,069,798 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11238,974,567 - 39,069,868 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21240,620,317 - 40,711,486 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SYNRG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11630,171,704 - 30,265,143 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1630,181,431 - 30,264,981 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666077893,668 - 991,044 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Synrg
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248714,509,428 - 4,593,337 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248714,505,693 - 4,593,472 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Synrg
2600 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2009
Count of miRNA genes:786
Interacting mature miRNAs:1017
Transcripts:ENSMUST00000049714, ENSMUST00000092834, ENSMUST00000132887, ENSMUST00000138676, ENSMUST00000142966, ENSMUST00000148901, ENSMUST00000183456, ENSMUST00000183714, ENSMUST00000184239
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170691198104691366Mouse
1300766Skull16_mskull morphology 16 (mouse)Not determined1181574481115574636Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172019649106019734Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
27226758Femd3_mfemur midshaft diameter 3, 5 week (mouse)1180890826101890826Mouse
1301640Lore4_mloss of righting induced by ethanol 4 (mouse)Not determined1179156009107616472Mouse
10412288Carg4_mCandida albicans resistance gene 4 (mouse)Not determined1181810267115810267Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5871926685066529Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170691198104691366Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166733420100733652Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170691198104691366Mouse
10413882Moe1_mmodifier of epilepsy 1 (mouse)1177770978111771099Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116483033698830473Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116483033698830473Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
10045616Heal25_mwound healing/regeneration 25 (mouse)Not determined1177437183111437322Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172726125106726289Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15850803087695238Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116483033698830473Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172818615106818733Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
1301414Heal10_mwound healing/regeneration 10 (mouse)Not determined1177437183111437322Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170691198104691366Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166733420100733652Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
1300649Crhq1_mcompensatory renal hypertrophy QTL 1 (mouse)Not determined1181574481115574636Mouse
14746970Manh71_mmandible shape 71 (mouse)1179416257113416257Mouse
10043865T2dm5sa_mtype 2 diabetes mellitus 5 in SMXA RI mice (mouse)Not determined1179813759104502698Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172818615106818733Mouse
1301072Eae22_mexperimental allergic encephalomyelitis 22 (mouse)Not determined1182377698116377820Mouse
1301078Alcp2_malcohol preference locus 2 (mouse)Not determined117220979684731462Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
11038695Par8_mpulmonary adenoma resistance 8 (mouse)1177063779111063918Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166733420100733652Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116215600596156153Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166733420100733652Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66733420100733652Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116168682088699728Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116331940794063918Mouse
1302124Eae7_msusceptibility to experimental allergic encephalomyelitis 7 (mouse)Not determined117757387399377820Mouse

Markers in Region
D9Mit34.1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map2C1.3UniSTS
Cytogenetic Map19D1UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11B4UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map1C1.3UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map2E2UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map1E3UniSTS
Cytogenetic Map5E1UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map16B3UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map19D3UniSTS
Cytogenetic Map1H5UniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map9DUniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map17DUniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map13A1UniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map12A3UniSTS
Cytogenetic Map1H2.1UniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map6A2UniSTS
Cytogenetic Map7B1UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map5C3.1UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map11B1.1UniSTS
Cytogenetic Map1H6UniSTS
Cytogenetic Map2C2UniSTS
Cytogenetic Map19CUniSTS
Cytogenetic Map17E1.3UniSTS
Cytogenetic Map5A1UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map13A5UniSTS
Cytogenetic MapXA1.1UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map3A3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map8CUniSTS
Cytogenetic Map12EUniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map1H1UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map1A2UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXC-DUniSTS
Cytogenetic Map5G1.3UniSTS
Cytogenetic Map7D1-E2UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map1H2.2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map16C1.1UniSTS
Cytogenetic Map15F2UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map1H4-H6UniSTS
Cytogenetic Map12D2UniSTS
Cytogenetic Map1G3UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map1H3UniSTS
Cytogenetic Map19BUniSTS
cM Map950.0UniSTS
Whitehead Genetic943.7UniSTS
UniSTS:236674  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381183,962,786 - 83,962,985UniSTSGRCm38
MGSCv371183,776,288 - 83,776,487UniSTSGRCm37
Celera1193,567,829 - 93,568,028UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map11B5UniSTS
RH125949  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381184,041,322 - 84,041,560UniSTSGRCm38
MGSCv371183,854,824 - 83,855,062UniSTSGRCm37
Celera1193,646,447 - 93,646,685UniSTS
Cytogenetic Map11CUniSTS
Whitehead/MRC_RH111074.84UniSTS


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001405109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001405112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001405113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001405115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001405116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001405118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001405121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001405122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001405123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_194341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK053209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK142858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK143010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL645615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC056370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY135827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000049714   ⟹   ENSMUSP00000059000
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1183,855,254 - 83,931,780 (+)Ensembl
GRCm38.p6 Ensembl1183,964,428 - 84,040,954 (+)Ensembl
Ensembl Acc Id: ENSMUST00000092834   ⟹   ENSMUSP00000090510
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1183,855,254 - 83,935,404 (+)Ensembl
GRCm38.p6 Ensembl1183,964,428 - 84,044,578 (+)Ensembl
Ensembl Acc Id: ENSMUST00000132887
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1183,917,481 - 83,930,836 (+)Ensembl
GRCm38.p6 Ensembl1184,026,655 - 84,040,010 (+)Ensembl
Ensembl Acc Id: ENSMUST00000138676   ⟹   ENSMUSP00000117709
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1183,873,122 - 83,881,697 (+)Ensembl
GRCm38.p6 Ensembl1183,982,296 - 83,990,871 (+)Ensembl
Ensembl Acc Id: ENSMUST00000142966
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1183,880,637 - 83,882,113 (+)Ensembl
GRCm38.p6 Ensembl1183,989,811 - 83,991,287 (+)Ensembl
Ensembl Acc Id: ENSMUST00000148901
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1183,872,278 - 83,880,637 (+)Ensembl
GRCm38.p6 Ensembl1183,981,452 - 83,989,811 (+)Ensembl
Ensembl Acc Id: ENSMUST00000183456   ⟹   ENSMUSP00000138969
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1183,855,302 - 83,931,754 (+)Ensembl
GRCm38.p6 Ensembl1183,964,476 - 84,040,928 (+)Ensembl
Ensembl Acc Id: ENSMUST00000183714   ⟹   ENSMUSP00000139103
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1183,855,302 - 83,931,754 (+)Ensembl
GRCm38.p6 Ensembl1183,964,476 - 84,040,928 (+)Ensembl
Ensembl Acc Id: ENSMUST00000184239
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1183,910,027 - 83,932,237 (+)Ensembl
GRCm38.p6 Ensembl1184,019,201 - 84,041,411 (+)Ensembl
RefSeq Acc Id: NM_001405109   ⟹   NP_001392038
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391183,855,258 - 83,935,404 (+)NCBI
RefSeq Acc Id: NM_001405112   ⟹   NP_001392041
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391183,855,258 - 83,935,404 (+)NCBI
RefSeq Acc Id: NM_001405113   ⟹   NP_001392042
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391183,855,258 - 83,935,404 (+)NCBI
RefSeq Acc Id: NM_001405115   ⟹   NP_001392044
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391183,855,258 - 83,935,404 (+)NCBI
RefSeq Acc Id: NM_001405116   ⟹   NP_001392045
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391183,855,258 - 83,935,404 (+)NCBI
RefSeq Acc Id: NM_001405118   ⟹   NP_001392047
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391183,855,258 - 83,935,404 (+)NCBI
RefSeq Acc Id: NM_001405121   ⟹   NP_001392050
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391183,855,258 - 83,902,911 (+)NCBI
RefSeq Acc Id: NM_001405122   ⟹   NP_001392051
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391183,855,258 - 83,902,911 (+)NCBI
RefSeq Acc Id: NM_001405123   ⟹   NP_001392052
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391183,855,258 - 83,902,911 (+)NCBI
RefSeq Acc Id: NM_194341   ⟹   NP_919322
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391183,855,258 - 83,935,404 (+)NCBI
GRCm381183,964,431 - 84,044,578 (+)NCBI
MGSCv371183,777,930 - 83,855,591 (+)RGD
Celera1193,569,474 - 93,649,703 (+)NCBI
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006532979   ⟹   XP_006533042
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391183,855,217 - 83,935,404 (+)NCBI
GRCm381183,964,390 - 84,044,578 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006532981   ⟹   XP_006533044
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391183,858,235 - 83,935,392 (+)NCBI
GRCm381183,967,409 - 84,044,578 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006532982   ⟹   XP_006533045
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391183,858,235 - 83,935,392 (+)NCBI
GRCm381183,967,409 - 84,044,578 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006532985   ⟹   XP_006533048
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391183,855,232 - 83,935,404 (+)NCBI
GRCm381183,964,394 - 84,044,578 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006532986   ⟹   XP_006533049
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391183,855,234 - 83,935,404 (+)NCBI
GRCm381183,964,408 - 84,044,578 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006532988   ⟹   XP_006533051
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391183,855,232 - 83,932,915 (+)NCBI
GRCm381183,964,395 - 84,044,578 (+)NCBI
Sequence:
RefSeq Acc Id: NP_919322   ⟸   NM_194341
- Peptide Label: isoform 7
- UniProtKB: Q6PHT6 (UniProtKB/Swiss-Prot),   Q5SV85 (UniProtKB/Swiss-Prot),   Q5SV84 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006533042   ⟸   XM_006532979
- Peptide Label: isoform X1
- UniProtKB: Q5SV84 (UniProtKB/Swiss-Prot),   Q6PHT6 (UniProtKB/Swiss-Prot),   Q5SV85 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006533048   ⟸   XM_006532985
- Peptide Label: isoform X8
- UniProtKB: Q6PHT6 (UniProtKB/Swiss-Prot),   Q5SV85 (UniProtKB/Swiss-Prot),   Q5SV84 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006533051   ⟸   XM_006532988
- Peptide Label: isoform X10
- UniProtKB: Q6PHT6 (UniProtKB/Swiss-Prot),   Q5SV85 (UniProtKB/Swiss-Prot),   Q5SV84 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006533049   ⟸   XM_006532986
- Peptide Label: isoform X9
- UniProtKB: Q5SV85 (UniProtKB/Swiss-Prot),   Q5SV84 (UniProtKB/Swiss-Prot),   Q6PHT6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006533044   ⟸   XM_006532981
- Peptide Label: isoform X4
- UniProtKB: Q6PHT6 (UniProtKB/Swiss-Prot),   Q5SV85 (UniProtKB/Swiss-Prot),   Q5SV84 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006533045   ⟸   XM_006532982
- Peptide Label: isoform X5
- UniProtKB: Q6PHT6 (UniProtKB/Swiss-Prot),   Q5SV85 (UniProtKB/Swiss-Prot),   Q5SV84 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000117709   ⟸   ENSMUST00000138676
Ensembl Acc Id: ENSMUSP00000139103   ⟸   ENSMUST00000183714
Ensembl Acc Id: ENSMUSP00000138969   ⟸   ENSMUST00000183456
Ensembl Acc Id: ENSMUSP00000059000   ⟸   ENSMUST00000049714
Ensembl Acc Id: ENSMUSP00000090510   ⟸   ENSMUST00000092834
RefSeq Acc Id: NP_001392041   ⟸   NM_001405112
- Peptide Label: isoform 2
- UniProtKB: Q6PHT6 (UniProtKB/Swiss-Prot),   Q5SV85 (UniProtKB/Swiss-Prot),   Q5SV84 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001392042   ⟸   NM_001405113
- Peptide Label: isoform 3
- UniProtKB: Q6PHT6 (UniProtKB/Swiss-Prot),   Q5SV85 (UniProtKB/Swiss-Prot),   Q5SV84 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001392045   ⟸   NM_001405116
- Peptide Label: isoform 5
- UniProtKB: Q6PHT6 (UniProtKB/Swiss-Prot),   Q5SV85 (UniProtKB/Swiss-Prot),   Q5SV84 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001392038   ⟸   NM_001405109
- Peptide Label: isoform 1
- UniProtKB: Q6PHT6 (UniProtKB/Swiss-Prot),   Q5SV85 (UniProtKB/Swiss-Prot),   Q5SV84 (UniProtKB/Swiss-Prot),   V9GX40 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001392044   ⟸   NM_001405115
- Peptide Label: isoform 4
- UniProtKB: Q6PHT6 (UniProtKB/Swiss-Prot),   Q5SV85 (UniProtKB/Swiss-Prot),   Q5SV84 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001392047   ⟸   NM_001405118
- Peptide Label: isoform 6
- UniProtKB: Q6PHT6 (UniProtKB/Swiss-Prot),   Q5SV85 (UniProtKB/Swiss-Prot),   Q5SV84 (UniProtKB/Swiss-Prot),   V9GXD9 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001392050   ⟸   NM_001405121
- Peptide Label: isoform 8
RefSeq Acc Id: NP_001392051   ⟸   NM_001405122
- Peptide Label: isoform 9
RefSeq Acc Id: NP_001392052   ⟸   NM_001405123
- Peptide Label: isoform 10
Protein Domains
EH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5SV85-F1-model_v2 AlphaFold Q5SV85 1-1306 view protein structure

Promoters
RGD ID:6822292
Promoter ID:MM_KWN:8930
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000049714,   OTTMUST00000001943
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361183,777,586 - 83,778,086 (+)MPROMDB
RGD ID:8675936
Promoter ID:EPDNEW_M15999
Type:initiation region
Name:Synrg_1
Description:Mus musculus synergin, gamma , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381183,964,432 - 83,964,492EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1354742 AgrOrtholog
Ensembl Genes ENSMUSG00000034940 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000049714 ENTREZGENE
  ENSMUST00000049714.15 UniProtKB/Swiss-Prot
  ENSMUST00000092834 ENTREZGENE
  ENSMUST00000092834.12 UniProtKB/Swiss-Prot
  ENSMUST00000138676.2 UniProtKB/TrEMBL
  ENSMUST00000183456 ENTREZGENE
  ENSMUST00000183456.8 UniProtKB/TrEMBL
  ENSMUST00000183714 ENTREZGENE
  ENSMUST00000183714.8 UniProtKB/TrEMBL
Gene3D-CATH EF-hand UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EH_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SYNRG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:217030 UniProtKB/Swiss-Prot
MGD MGI:1354742 ENTREZGENE
NCBI Gene Synrg ENTREZGENE
PANTHER PTHR15463 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SYNERGIN GAMMA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Synrg PhenoGen
PROSITE PS50031 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SM00027 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt F6YUG5_MOUSE UniProtKB/TrEMBL
  Q3UQ32_MOUSE UniProtKB/TrEMBL
  Q5SV84 ENTREZGENE
  Q5SV85 ENTREZGENE
  Q6PHT6 ENTREZGENE
  SYNRG_MOUSE UniProtKB/Swiss-Prot
  V9GX40 ENTREZGENE, UniProtKB/TrEMBL
  V9GXD9 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary Q5SV84 UniProtKB/Swiss-Prot
  Q6PHT6 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-08-26 Synrg  synergin, gamma  Ap1gbp1  AP1 gamma subunit binding protein 1  Symbol and/or name updated 27372883 PROVISIONAL
2024-08-21 Ap1gbp1  AP1 gamma subunit binding protein 1  Synrg  synergin, gamma  Symbol and/or name change 5135510 APPROVED