Zbtb17 (zinc finger and BTB domain containing 17) - Rat Genome Database

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Gene: Zbtb17 (zinc finger and BTB domain containing 17) Mus musculus
Analyze
Symbol: Zbtb17
Name: zinc finger and BTB domain containing 17
RGD ID: 1550658
MGI Page MGI
Description: Enables DNA binding activity. Acts upstream of or within ectoderm development; gastrulation with mouth forming second; and positive regulation of DNA-templated transcription. Located in nucleus. Is expressed in several structures, including cortical plate; early conceptus; genitourinary system; limb; and trunk somite. Orthologous to human ZBTB17 (zinc finger and BTB domain containing 17).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AA589413; Lp-1; Miz; Miz1; mZ13; polyomavirus late initiator promoter-binding protein; zfp-100; Zfp10; Zfp100; zinc finger and BTB domain-containing protein 17; zinc finger protein 100; zinc finger protein 151; zinc finger protein Z13
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394141,171,984 - 141,195,248 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4141,171,965 - 141,195,241 (+)EnsemblGRCm39 Ensembl
GRCm384141,444,673 - 141,467,937 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4141,444,654 - 141,467,930 (+)EnsemblGRCm38mm10GRCm38
MGSCv374141,000,588 - 141,023,852 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364140,716,760 - 140,739,305 (+)NCBIMGSCv36mm8
Celera4143,261,157 - 143,285,202 (+)NCBICelera
Cytogenetic Map4D3NCBI
cM Map474.17NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. MGD IEA MGD IEA
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7575457   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12408820   PMID:12477932   PMID:12520002   PMID:12861998   PMID:12904288   PMID:12904583   PMID:14560010  
PMID:14610273   PMID:15580267   PMID:15616584   PMID:15752756   PMID:16141072   PMID:16141073   PMID:16458891   PMID:16522640   PMID:17635993   PMID:18045875   PMID:18287559   PMID:18292777  
PMID:19164764   PMID:19815509   PMID:20059953   PMID:20190815   PMID:20308430   PMID:20412781   PMID:20426839   PMID:20551174   PMID:21167753   PMID:21258009   PMID:21267068   PMID:21841135  
PMID:21873635   PMID:22184250   PMID:22509363   PMID:23525087   PMID:23671675   PMID:23699408   PMID:24088869   PMID:24586582   PMID:24702277   PMID:25043018   PMID:25416780   PMID:25468973  
PMID:25558878   PMID:26119937   PMID:26766587   PMID:27926868   PMID:29217679   PMID:31273062   PMID:32200350   PMID:32325033   PMID:32851183   PMID:34038747   PMID:34305888   PMID:34321999  
PMID:34351428   PMID:36538983   PMID:37040844  


Genomics

Comparative Map Data
Zbtb17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394141,171,984 - 141,195,248 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4141,171,965 - 141,195,241 (+)EnsemblGRCm39 Ensembl
GRCm384141,444,673 - 141,467,937 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4141,444,654 - 141,467,930 (+)EnsemblGRCm38mm10GRCm38
MGSCv374141,000,588 - 141,023,852 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364140,716,760 - 140,739,305 (+)NCBIMGSCv36mm8
Celera4143,261,157 - 143,285,202 (+)NCBICelera
Cytogenetic Map4D3NCBI
cM Map474.17NCBI
ZBTB17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38115,941,869 - 15,976,101 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl115,941,869 - 15,976,132 (-)EnsemblGRCh38hg38GRCh38
GRCh37116,268,364 - 16,302,596 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36116,140,951 - 16,175,101 (-)NCBINCBI36Build 36hg18NCBI36
Build 34116,013,671 - 16,047,820NCBI
Celera114,748,238 - 14,782,515 (-)NCBICelera
Cytogenetic Map1p36.13NCBI
HuRef114,787,372 - 14,821,661 (-)NCBIHuRef
CHM1_1116,066,899 - 16,101,159 (-)NCBICHM1_1
T2T-CHM13v2.0115,383,149 - 15,417,408 (-)NCBIT2T-CHM13v2.0
Zbtb17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85159,036,482 - 159,057,580 (+)NCBIGRCr8
mRatBN7.25153,753,508 - 153,774,613 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5153,753,569 - 153,774,609 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5156,440,859 - 156,461,960 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05158,214,147 - 158,235,248 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05158,203,320 - 158,224,423 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05159,993,799 - 160,014,899 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5159,993,799 - 160,014,895 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05163,713,685 - 163,734,715 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45160,337,988 - 160,359,060 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15160,348,175 - 160,369,246 (+)NCBI
Celera5152,113,183 - 152,134,155 (+)NCBICelera
Cytogenetic Map5q36NCBI
Zbtb17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555272,252,074 - 2,282,787 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555272,252,118 - 2,278,127 (+)NCBIChiLan1.0ChiLan1.0
ZBTB17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21210,944,784 - 210,977,584 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11210,193,373 - 210,226,193 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0115,080,880 - 15,113,676 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1116,074,005 - 16,106,709 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl116,074,005 - 16,106,700 (-)Ensemblpanpan1.1panPan2
ZBTB17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1281,652,015 - 81,682,647 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl281,652,157 - 81,682,660 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha278,188,685 - 78,220,088 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0282,297,860 - 82,329,775 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl282,297,873 - 82,329,761 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1279,051,015 - 79,083,027 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0280,069,989 - 80,101,528 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0281,136,103 - 81,167,412 (+)NCBIUU_Cfam_GSD_1.0
Zbtb17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505837,712,259 - 37,738,912 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364743,537,043 - 3,563,770 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364743,535,351 - 3,563,664 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZBTB17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl675,107,427 - 75,144,069 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1675,108,728 - 75,144,103 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ZBTB17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120116,324,794 - 116,358,600 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605419,851,110 - 19,885,521 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zbtb17
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247642,144,878 - 2,174,545 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247642,144,555 - 2,174,177 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Zbtb17
843 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1203
Count of miRNA genes:561
Interacting mature miRNAs:690
Transcripts:ENSMUST00000006377, ENSMUST00000123477, ENSMUST00000130482, ENSMUST00000142020, ENSMUST00000142438, ENSMUST00000142695, ENSMUST00000144899
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465718237146584457Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468018237150884457Mouse
1301823Bmd7_mbone mineral density 7 (mouse)Not determined488982069151654550Mouse
13208562Wght7_mweight 7 (mouse)490888237148084457Mouse
1301815Sles2_msystemic lupus erythmatosus suppressor 2 (mouse)Not determined494957579150676858Mouse
12910794Pwbwq8_mpost-weaning body weight QTL 8 (mouse)4105835310141433838Mouse
12910797Pwgrq4_mpre-weaning growth rate QTL 4 (mouse)4105835310141433838Mouse
12910808Pwbwq9_mpost-weaning body weight QTL 9 (mouse)4105835310141433838Mouse
12910813Pwbwq4_mpre-weaning body weight QTL 4 (mouse)4105835310141433838Mouse
1300809Ccrs2_mcorpus callosum hemisphere surface size 2 (mouse)Not determined4107264957141265153Mouse
1300781Lith8_mlithogenic gene 8 (mouse)Not determined4107264957141265153Mouse
1300663Start2_mstartle response 2 (mouse)Not determined4107264957141265153Mouse
1301382Arvm2_mautoimmune renal vasculitis 2 (mouse)Not determined4107791564141791756Mouse
10755522Hgb1_mhemoglobin 1 (mouse)4108477692142477692Mouse
10755521Hct1_mhematocrit 1 (mouse)4108477692142477692Mouse
10755520Rbc1_mred blood cell count 1 (mouse)4108477692142477692Mouse
1300839Dyscalc2_mdystrophic cardiac calcinosis 2 (mouse)Not determined4111009051145009280Mouse
1300743Skull6_mskull morphology 6 (mouse)Not determined4111009051145009280Mouse
15039385Mvlq3_mmacrovesicular liver lesion QTL 3 (mouse)4112182386146182386Mouse
4141001Tgq17_mtriglyceride QTL 17 (mouse)Not determined112523489146523489Mouse
10047132Albq19_malbuminuria QTL 19 (mouse)Not determined4112824389146824389Mouse
4142493Femwf13_mfemur work to failure 13 (mouse)Not determined116154678150154782Mouse
1302078Sluc21_msusceptibility to lung cancer 21 (mouse)Not determined4117401141151401275Mouse
14746982Manh56_mmandible shape 56 (mouse)4117815917151815917Mouse
1302102Bis1_mbeta-carboline-induced seizures 1 (mouse)Not determined4119864433153864536Mouse
1301964Bw8q2_mbody weight at 8 weeks QTL 2 (mouse)Not determined4119864433153864536Mouse
13503348Bntq18_mbone traits QTL 18 (mouse)4120617848154617995Mouse
10412210Cypr6_mcytokine production 6 (mouse)Not determined4120617848154617995Mouse
4141180Ssic1_msusceptibility to small intestinal cancer 1 (mouse)Not determined120674005154674151Mouse
1300803Sluc6_msusceptibility to lung cancer 6 (mouse)Not determined4120674005154674151Mouse
10043985Stheal12_msoft tissue heal 12 (mouse)Not determined4121342649155342753Mouse
4142061Chlq16_mcirculating hormone level QTL 16 (mouse)Not determined4121342649155342753Mouse
1301452Elsgp1_melevated serum gp70 1 (mouse)Not determined4121342649155342753Mouse
27226757Femd1_mfemur midshaft diameter 1, 5 week (mouse)4123993793144326570Mouse
4141065Shali2_msurvival time to hyperoxic acute lung injury 2 (mouse)Not determined124055093141572792Mouse
1300917Gasa1_mgastritis type A susceptibility locus 1 (mouse)Not determined4124055093142438020Mouse
1302149Tlsr2_mthymic lymphoma suppressor region 2 (mouse)Not determined4124264957142230960Mouse
1301525Lmb1_mlupus in MRL and B6 F2 cross (mouse)Not determined4124264957150676858Mouse
10755531Lymph3_mlymphocyte differential 3 (mouse)4124553483156860686Mouse
1300858Tafat_mtally ho associated mesenteric fat pad weight (mouse)Not determined4124621281156860686Mouse
4142139Adip12_madiposity 12 (mouse)Not determined4124621281156860686Mouse
1301982Pltiq1_mphospholipid transfer protein inducibility QTL 1 (mouse)Not determined4124621281156860686Mouse
1300933Cdcs9_mcytokine deficiency colitis susceptibility 9 (mouse)Not determined4125230872156860686Mouse
1300621Tpnr1_mthermal pain response 1 (mouse)Not determined4125230872156860686Mouse
10045620Heal22_mwound healing/regeneration 22 (mouse)Not determined4125230872156860686Mouse
11533916Mts1_mmammary tumor susceptibility 1 (mouse)4125289325156860686Mouse
10043996Gct5_mgranulosa cell tumorigenesis 5 (mouse)Not determined4127784226156860686Mouse
4142481Gct1_mgranulosa cell tumorigenesis 1 (mouse)Not determined4127784226156860686Mouse
1301584Lrdg2_mlight induced retinal degeneration 2 (mouse)Not determined4129465811151654550Mouse
1300874Gasa2_mgastritis type A susceptibility locus 2 (mouse)Not determined4133010494156860686Mouse
1301267Bcmd2_mB cell maturation defect 2 (mouse)Not determined4133154678150789451Mouse
4142077Ignpq2_mIgA nephropathy QTL 2 (mouse)Not determined4133676733156860686Mouse
1301108Scon2_msucrose consumption 2 (mouse)Not determined4134654451156860686Mouse
1300537Ap3q_malcohol preference 3 QTL (mouse)Not determined4134654451156860686Mouse
1357534Cinda3_mcytokine induced activation 3 (mouse)Not determined4137617848142289472Mouse
1300553Athsq1_matherosclerosis susceptibility QTL 1 (mouse)Not determined4137617848151654550Mouse
4141184Tb2r1_mTGF-beta2 responsiveness 1 (mouse)Not determined137674005150676858Mouse
1300780Cocrb16_mcocaine related behavior 16 (mouse)Not determined4138943725156860686Mouse

Markers in Region
RH124953  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384141,466,170 - 141,466,410UniSTSGRCm38
MGSCv374141,022,085 - 141,022,325UniSTSGRCm37
Celera4143,283,435 - 143,283,675UniSTS
Cytogenetic Map4E1UniSTS
PMC207589P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384141,463,423 - 141,463,672UniSTSGRCm38
MGSCv374141,019,338 - 141,019,587UniSTSGRCm37
Celera4143,280,688 - 143,280,937UniSTS
Cytogenetic Map4E1UniSTS
PMC207589P2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384141,462,892 - 141,463,303UniSTSGRCm38
MGSCv374141,018,807 - 141,019,218UniSTSGRCm37
Celera4143,280,157 - 143,280,568UniSTS
Cytogenetic Map4E1UniSTS
PMC207589P3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384141,462,956 - 141,463,303UniSTSGRCm38
MGSCv374141,018,871 - 141,019,218UniSTSGRCm37
Celera4143,280,221 - 143,280,568UniSTS
Cytogenetic Map4E1UniSTS
PMC207589P4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384141,462,956 - 141,463,117UniSTSGRCm38
MGSCv374141,018,871 - 141,019,032UniSTSGRCm37
Celera4143,280,221 - 143,280,382UniSTS
Cytogenetic Map4E1UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000006377   ⟹   ENSMUSP00000006377
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4141,171,965 - 141,194,536 (+)Ensembl
GRCm38.p6 Ensembl4141,444,654 - 141,467,225 (+)Ensembl
RefSeq Acc Id: ENSMUST00000123477
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4141,192,129 - 141,193,379 (+)Ensembl
GRCm38.p6 Ensembl4141,464,818 - 141,466,068 (+)Ensembl
RefSeq Acc Id: ENSMUST00000130482
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4141,192,726 - 141,194,380 (+)Ensembl
GRCm38.p6 Ensembl4141,465,415 - 141,467,069 (+)Ensembl
RefSeq Acc Id: ENSMUST00000142020
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4141,172,010 - 141,194,536 (+)Ensembl
GRCm38.p6 Ensembl4141,444,699 - 141,467,225 (+)Ensembl
RefSeq Acc Id: ENSMUST00000142438
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4141,171,995 - 141,195,241 (+)Ensembl
GRCm38.p6 Ensembl4141,444,684 - 141,467,930 (+)Ensembl
RefSeq Acc Id: ENSMUST00000142695
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4141,190,694 - 141,192,358 (+)Ensembl
GRCm38.p6 Ensembl4141,463,383 - 141,465,047 (+)Ensembl
RefSeq Acc Id: ENSMUST00000144899
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4141,172,017 - 141,186,640 (+)Ensembl
GRCm38.p6 Ensembl4141,444,706 - 141,459,329 (+)Ensembl
RefSeq Acc Id: NM_001378826   ⟹   NP_001365755
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394141,171,995 - 141,194,536 (+)NCBI
GRCm384141,444,684 - 141,467,225 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001378827   ⟹   NP_001365756
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394141,171,995 - 141,194,536 (+)NCBI
GRCm384141,444,684 - 141,467,225 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001378828   ⟹   NP_001365757
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394141,171,995 - 141,194,536 (+)NCBI
GRCm384141,444,684 - 141,467,225 (+)NCBI
Sequence:
RefSeq Acc Id: NM_009541   ⟹   NP_033567
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394141,171,984 - 141,195,248 (+)NCBI
GRCm384141,444,673 - 141,467,937 (+)NCBI
MGSCv374141,000,588 - 141,023,852 (+)RGD
Celera4143,261,157 - 143,285,202 (+)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_033567   ⟸   NM_009541
- Peptide Label: isoform 1
- UniProtKB: A2ADB9 (UniProtKB/Swiss-Prot),   Q60699 (UniProtKB/Swiss-Prot),   Q60821 (UniProtKB/Swiss-Prot),   A6H6B9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001365757   ⟸   NM_001378828
- Peptide Label: isoform 1
- UniProtKB: Q60821 (UniProtKB/Swiss-Prot),   A2ADB9 (UniProtKB/Swiss-Prot),   Q60699 (UniProtKB/Swiss-Prot),   A6H6B9 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001365755   ⟸   NM_001378826
- Peptide Label: isoform 2
- UniProtKB: A6H6B9 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001365756   ⟸   NM_001378827
- Peptide Label: isoform 3
- UniProtKB: A6H6B9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000006377   ⟸   ENSMUST00000006377
Protein Domains
BTB   C2H2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q60821-F1-model_v2 AlphaFold Q60821 1-794 view protein structure

Promoters
RGD ID:6836682
Promoter ID:MM_KWN:40483
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000023959,   OTTMUST00000023960,   OTTMUST00000023961,   OTTMUST00000023962
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364141,000,254 - 141,000,754 (+)MPROMDB
RGD ID:6836683
Promoter ID:MM_KWN:40484
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:OTTMUST00000023963
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364141,018,126 - 141,018,626 (+)MPROMDB
RGD ID:6836684
Promoter ID:MM_KWN:40485
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   Lung,   Spleen
Transcripts:OTTMUST00000023964,   OTTMUST00000023965
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364141,020,436 - 141,020,936 (+)MPROMDB
RGD ID:6847863
Promoter ID:MM_ACW:36323
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Lung
Transcripts:ZBTB17.ISEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364141,021,346 - 141,021,846 (+)MPROMDB
RGD ID:6885316
Promoter ID:EPDNEW_M6109
Type:initiation region
Name:Zbtb17_1
Description:Mus musculus zinc finger and BTB domain containing 17 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384141,444,684 - 141,444,744EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:107410 AgrOrtholog
Ensembl Genes ENSMUSG00000006215 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000006377 ENTREZGENE
  ENSMUST00000006377.13 UniProtKB/Swiss-Prot
  ENSMUST00000142020 ENTREZGENE
Gene3D-CATH Classic Zinc Finger UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro BTB/POZ_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:22642 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:107410 ENTREZGENE
NCBI Gene 22642 ENTREZGENE
PANTHER LINKING IMMUNITY AND METABOLISM-RELATED UniProtKB/Swiss-Prot
  ZINC FINGER PROTEIN UniProtKB/Swiss-Prot
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 60-LIKE UniProtKB/TrEMBL
Pfam BTB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Zbtb17 PhenoGen
PROSITE BTB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART BTB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54695 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF57667 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2ADB9 ENTREZGENE
  A6H6B9 ENTREZGENE, UniProtKB/TrEMBL
  B7ZNL7_MOUSE UniProtKB/TrEMBL
  Q60699 ENTREZGENE
  Q60821 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A2ADB9 UniProtKB/Swiss-Prot
  Q60699 UniProtKB/Swiss-Prot