Scyl2 (SCY1-like 2 (S. cerevisiae)) - Rat Genome Database

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Gene: Scyl2 (SCY1-like 2 (S. cerevisiae)) Mus musculus
Analyze
Symbol: Scyl2
Name: SCY1-like 2 (S. cerevisiae)
RGD ID: 1550516
MGI Page MGI
Description: Predicted to enable signaling receptor binding activity. Involved in pyramidal neuron development. Predicted to be located in Golgi apparatus; endosome; and membrane. Human ortholog(s) of this gene implicated in arthrogryposis multiplex congenita-4. Orthologous to human SCYL2 (SCY1 like pseudokinase 2); INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.
Type: gene (Ensembl: protein-coding)
Previously known as: AU015688; AW536445; BC030932; coated vesicle-associated kinase of 104 kDa; CVAK1; CVAK104; D10Ertd802; SCY1-like protein 2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391089,474,582 - 89,522,179 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1089,474,583 - 89,522,147 (-)EnsemblGRCm39 Ensembl
GRCm381089,638,720 - 89,686,317 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1089,638,721 - 89,686,285 (-)EnsemblGRCm38mm10GRCm38
MGSCv371089,102,852 - 89,149,030 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361089,069,906 - 89,116,084 (-)NCBIMGSCv36mm8
Celera1091,640,299 - 91,687,002 (-)NCBICelera
Cytogenetic Map10C2NCBI
cM Map1049.0NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Genomics

Comparative Map Data
Scyl2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391089,474,582 - 89,522,179 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1089,474,583 - 89,522,147 (-)EnsemblGRCm39 Ensembl
GRCm381089,638,720 - 89,686,317 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1089,638,721 - 89,686,285 (-)EnsemblGRCm38mm10GRCm38
MGSCv371089,102,852 - 89,149,030 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361089,069,906 - 89,116,084 (-)NCBIMGSCv36mm8
Celera1091,640,299 - 91,687,002 (-)NCBICelera
Cytogenetic Map10C2NCBI
cM Map1049.0NCBI
SCYL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812100,267,177 - 100,341,715 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12100,267,140 - 100,341,715 (+)EnsemblGRCh38hg38GRCh38
GRCh3712100,660,955 - 100,735,493 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361299,185,680 - 99,258,048 (+)NCBINCBI36Build 36hg18NCBI36
Build 341299,164,016 - 99,236,380NCBI
Celera12100,326,815 - 100,399,182 (+)NCBICelera
Cytogenetic Map12q23.1NCBI
HuRef1297,722,877 - 97,795,047 (+)NCBIHuRef
CHM1_112100,627,192 - 100,699,929 (+)NCBICHM1_1
T2T-CHM13v2.012100,228,403 - 100,303,144 (+)NCBIT2T-CHM13v2.0
Scyl2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8725,951,734 - 26,004,663 (-)NCBIGRCr8
mRatBN7.2724,064,404 - 24,117,338 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl724,064,404 - 24,117,305 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx726,058,920 - 26,111,817 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0728,221,349 - 28,274,181 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0727,998,664 - 28,051,565 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0730,291,087 - 30,344,464 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl730,291,087 - 30,344,445 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0730,387,991 - 30,441,350 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4726,429,923 - 26,483,533 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1726,451,520 - 26,503,820 (-)NCBI
Celera721,207,836 - 21,260,716 (-)NCBICelera
Cytogenetic Map7q13NCBI
Scyl2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540535,984,667 - 36,043,628 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540535,984,667 - 36,043,581 (+)NCBIChiLan1.0ChiLan1.0
SCYL2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210108,333,141 - 108,404,856 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112108,329,559 - 108,401,253 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01297,848,852 - 97,920,561 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112101,255,169 - 101,326,808 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12101,255,412 - 101,326,808 (+)Ensemblpanpan1.1panPan2
SCYL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11539,365,702 - 39,429,979 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1539,365,157 - 39,428,085 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1539,744,679 - 39,808,502 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01540,028,775 - 40,093,229 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1540,028,228 - 40,093,033 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11539,286,373 - 39,350,816 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01539,392,749 - 39,457,180 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01539,666,912 - 39,731,343 (+)NCBIUU_Cfam_GSD_1.0
Scyl2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494520,492,420 - 20,554,460 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649213,501,663 - 13,564,867 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649213,502,854 - 13,564,886 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SCYL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl583,813,206 - 83,878,760 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1583,813,207 - 83,878,766 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2588,004,752 - 88,052,916 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SCYL2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11195,582,856 - 95,655,974 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037149,389,158 - 149,462,368 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Scyl2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247507,412,869 - 7,477,965 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Scyl2
1603 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2298
Count of miRNA genes:757
Interacting mature miRNAs:1008
Transcripts:ENSMUST00000092227, ENSMUST00000105294, ENSMUST00000173526, ENSMUST00000174252, ENSMUST00000174429, ENSMUST00000174492, ENSMUST00000174575
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302035Lmb4_mlupus in MRL and B6 F2 cross (mouse)Not determined106684818792258673Mouse
12910789Pwgrq19_mpost-weaning growth rate QTL 19 (mouse)108282870092169056Mouse
1301520Uvbi1_mUVB induced immunosuppression 1 (mouse)Not determined1086909085120909229Mouse
4142137Femwf3_mfemur work to failure 3 (mouse)Not determined75338568109338767Mouse
1301787Bsc1_mbrain size control 1 (mouse)Not determined105851696992517096Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
4142386Tgq20_mtriglyceride QTL 20 (mouse)Not determined88836456122836456Mouse
1357594Estoq3_membryo survival total QTL 3 (mouse)Not determined1084079650122041528Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039175996129635869Mouse
1357831Igf1sl2_mIGF-1 serum levels 2 (mouse)Not determined108769412799936278Mouse
4141479W10q8_mweight 10 weeks QTL 8 (mouse)Not determined84079650122041528Mouse
14747004Mancz8_mmandible centroid size 8 (mouse)1082078412116078412Mouse
4142496W6q8_mweight 6 weeks QTL 8 (mouse)Not determined84079650122041528Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018259333125575232Mouse
26884411Bzwq8_mbi-zygomatic width QTL 8, 10 week (mouse)1044876096115935905Mouse
11039497Ltpr5a_mLeishmania tropica response 5a (mouse)1073506901107507047Mouse
1357622Espq3_membryo survival preimplantation QTL 3 (mouse)Not determined1084079650122041528Mouse
4142365Egq9_mearly growth QTL 9 (mouse)Not determined84079650122041528Mouse
1300533Aem3_manti-erythrocyte autoantibody modifier 3 (mouse)Not determined106549093899491121Mouse
26884403Cvht8_mcranial vault height 8, 16 week (mouse)102287589991035862Mouse
1300921Skl4_mskeletal size (tail length) 4 (mouse)Not determined1088088254122088391Mouse
26884407Bzwq14_mbi-zygomatic width QTL 14, 16 wee (mouse)1045476096120635905Mouse
11251717Siim1_mstress induced immobility 1 (mouse)1078381268112381268Mouse
1300797Sluc22_msusceptibility to lung cancer 22 (mouse)Not determined1086713608120713756Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069735830130430862Mouse
1357740Obsty3_mobesity 3 (mouse)Not determined108235478116190980Mouse
13208560Wght9_mweight 9 (mouse)1059835822120835905Mouse
1301165Lith7_mlithogenic gene 7 (mouse)Not determined1082309418116309657Mouse
1302060El3_mepilepsy 3 (mouse)Not determined106549093899491121Mouse
1300908Insq4_minsulin QTL 4 (mouse)Not determined1086909085120909229Mouse
4141054mwfh_mmodifier of white forlock hypopigmentation (mouse)Not determined83017003117017136Mouse
26884447Sklq9_mskull length QTL 9, 10 week (mouse)1067335830111735905Mouse
11353832Pcholq4_mplasma cholesterol QTL 4 (mouse)1073987216125515907Mouse
1357779Tesq3_mtestis weight QTL 3 (mouse)Not determined1084079650122041528Mouse
11059553Lmr32d_mleishmaniasis resistance 32d (mouse)1082309418116309657Mouse
11059554Lmr32e_mleishmaniasis resistance 32e (mouse)1082309418116309657Mouse
11059555Lmr32f_mleishmaniasis resistance 32f (mouse)1082309418116309657Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024675898121035905Mouse
26884424Zlq9_mzygomatic length QTL 9, 16 week (mouse)1063935779115935905Mouse
1357638Cia29_mcollagen induced arthritis 29 (mouse)Not determined1085454982118497353Mouse
26884430Zlq5_mzygomatic length QTL 5, 10 week (mouse)1067835830124835905Mouse
1357632Vtbt9_mvertebral trabecular bone trait 9 (mouse)Not determined1075338568109338767Mouse
11353843Gluq1_mblood glucose QTL 1 (mouse)1073987216125515907Mouse
10043881Adip24_madiposity 24 (mouse)Not determined1082392803116392952Mouse
1558757Eae34_mexperimental allergic encephalomyelitis susceptibility 34 (mouse)Not determined1021408154114217230Mouse
4141387Lgaq5_mlate growth adjusted QTL 5 (mouse)Not determined84079650122041528Mouse
11059550Lmr32a_mleishmaniasis resistance 32a (mouse)1082309418116309657Mouse
11059551Lmr32b_mleishmaniasis resistance 32b (mouse)1082309418116309657Mouse
26884450Sklq15_mskull length QTL 15, 16 week (mouse)1059335822122335905Mouse
4141382Ssrq4_mstress response QTL 4 (mouse)Not determined8249093890856102Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039175996129635869Mouse
1301737Insq9_minsulin QTL 9 (mouse)Not determined106549093899491121Mouse
1300975Fembrs3_mfemur breaking strength 3 (mouse)Not determined1075338568109338767Mouse
13524528Bodwtq9_mbody wweight QTL 9 (mouse)108764311793193117Mouse

Markers in Region
AU015688  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381089,639,566 - 89,639,811UniSTSGRCm38
MGSCv371089,102,311 - 89,102,556UniSTSGRCm37
Celera1091,639,758 - 91,640,003UniSTS
Cytogenetic Map10C2UniSTS
cM Map1049.0UniSTS
Whitehead/MRC_RH101027.98UniSTS
AW536445  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381089,639,238 - 89,639,352UniSTSGRCm38
GRCm381089,639,238 - 89,639,328UniSTSGRCm38
MGSCv371089,101,983 - 89,102,097UniSTSGRCm37
MGSCv371089,101,983 - 89,102,073UniSTSGRCm37
Celera1091,639,426 - 91,639,536UniSTS
Celera1091,639,426 - 91,639,524UniSTS
Cytogenetic Map10C2UniSTS
cM Map1049.0UniSTS
Whitehead/MRC_RH101028.9UniSTS
28.MMHAP15FLB4.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381089,680,916 - 89,681,115UniSTSGRCm38
MGSCv371089,143,661 - 89,143,860UniSTSGRCm37
Celera1091,681,513 - 91,681,712UniSTS
Cytogenetic Map10C2UniSTS
cM Map1049.0UniSTS
Whitehead_YAC10 UniSTS
UniSTS:236435  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381089,639,508 - 89,639,764UniSTSGRCm38
MGSCv371089,102,253 - 89,102,509UniSTSGRCm37
Celera1091,639,700 - 91,639,956UniSTS
Cytogenetic Map10C2UniSTS
cM Map1049.0UniSTS
UniSTS:236436  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381089,640,492 - 89,640,758UniSTSGRCm38
MGSCv371089,103,237 - 89,103,503UniSTSGRCm37
Celera1091,640,684 - 91,640,950UniSTS
Cytogenetic Map10C2UniSTS
cM Map1049.0UniSTS
AU016009  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381089,638,861 - 89,638,978UniSTSGRCm38
MGSCv371089,101,606 - 89,101,723UniSTSGRCm37
Celera1091,639,109 - 91,639,226UniSTS
Cytogenetic Map10C2UniSTS
cM Map1049.0UniSTS
Whitehead/MRC_RH101029.47UniSTS
D10Ertd802e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381089,638,780 - 89,639,019UniSTSGRCm38
MGSCv371089,101,525 - 89,101,764UniSTSGRCm37
Celera1091,639,028 - 91,639,267UniSTS
Cytogenetic Map10C2UniSTS
cM Map1049.0UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000092227   ⟹   ENSMUSP00000089874
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1089,475,814 - 89,522,130 (-)Ensembl
GRCm38.p6 Ensembl1089,639,952 - 89,686,268 (-)Ensembl
Ensembl Acc Id: ENSMUST00000105294
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1089,475,531 - 89,490,333 (-)Ensembl
GRCm38.p6 Ensembl1089,639,669 - 89,654,471 (-)Ensembl
Ensembl Acc Id: ENSMUST00000173526
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1089,485,614 - 89,490,037 (-)Ensembl
GRCm38.p6 Ensembl1089,649,752 - 89,654,175 (-)Ensembl
Ensembl Acc Id: ENSMUST00000174252   ⟹   ENSMUSP00000133992
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1089,474,583 - 89,522,147 (-)Ensembl
GRCm38.p6 Ensembl1089,638,721 - 89,686,285 (-)Ensembl
Ensembl Acc Id: ENSMUST00000174429
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1089,511,506 - 89,522,125 (-)Ensembl
GRCm38.p6 Ensembl1089,675,644 - 89,686,263 (-)Ensembl
Ensembl Acc Id: ENSMUST00000174492   ⟹   ENSMUSP00000134366
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1089,486,612 - 89,496,023 (-)Ensembl
GRCm38.p6 Ensembl1089,650,750 - 89,660,161 (-)Ensembl
Ensembl Acc Id: ENSMUST00000174575
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1089,503,287 - 89,522,130 (-)Ensembl
GRCm38.p6 Ensembl1089,667,425 - 89,686,268 (-)Ensembl
RefSeq Acc Id: NM_001310704   ⟹   NP_001297633
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391089,474,582 - 89,522,156 (-)NCBI
GRCm381089,638,720 - 89,686,294 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001358843   ⟹   NP_001345772
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391089,474,582 - 89,522,156 (-)NCBI
GRCm381089,638,720 - 89,686,294 (-)NCBI
Sequence:
RefSeq Acc Id: NM_198021   ⟹   NP_932138
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391089,474,582 - 89,522,156 (-)NCBI
GRCm381089,638,720 - 89,686,294 (-)NCBI
MGSCv371089,102,852 - 89,149,030 (-)RGD
Celera1091,640,299 - 91,687,002 (-)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011243394   ⟹   XP_011241696
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391089,474,582 - 89,522,179 (-)NCBI
GRCm381089,638,720 - 89,686,317 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036155724   ⟹   XP_036011617
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391089,488,862 - 89,522,179 (-)NCBI
Sequence:
Protein Sequences
Ensembl Protein ENSMUSP00000089874.6
  ENSMUSP00000133992.2
  ENSMUSP00000134366.2
RefSeq Acc Id: NP_932138   ⟸   NM_198021
- Peptide Label: isoform 1
- Sequence:
RefSeq Acc Id: XP_011241696   ⟸   XM_011243394
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001297633   ⟸   NM_001310704
- Peptide Label: isoform 2
- Sequence:
RefSeq Acc Id: NP_001345772   ⟸   NM_001358843
- Peptide Label: isoform 3
Ensembl Acc Id: ENSMUSP00000089874   ⟸   ENSMUST00000092227
Ensembl Acc Id: ENSMUSP00000133992   ⟸   ENSMUST00000174252
Ensembl Acc Id: ENSMUSP00000134366   ⟸   ENSMUST00000174492
RefSeq Acc Id: XP_036011617   ⟸   XM_036155724
- Peptide Label: isoform X2
Protein Domains
Protein kinase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8CFE4-F1-model_v2 AlphaFold Q8CFE4 1-930 view protein structure

Promoters
RGD ID:6819921
Promoter ID:MM_KWN:5311
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:AK048993_1500026H17RIK,   ENSMUST00000092227,   UC007GSN.1,   UC007GSP.1,   UC007GSQ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361089,148,854 - 89,149,354 (-)MPROMDB
RGD ID:8673016
Promoter ID:EPDNEW_M14538
Type:initiation region
Name:Scyl2_1
Description:Mus musculus SCY1-like 2 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381089,686,268 - 89,686,328EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1289172 AgrOrtholog
Ensembl Genes ENSMUSG00000069539 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000092227.12 UniProtKB/TrEMBL
  ENSMUST00000174252.8 UniProtKB/Swiss-Prot
  ENSMUST00000174492.2 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Transferase(Phosphotransferase) domain 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CIK-Related_Protein UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:213326 UniProtKB/Swiss-Prot
MGD MGI:1289172 ENTREZGENE
NCBI Gene D10Ertd802e ENTREZGENE
PANTHER SCY1-LIKE PROTEIN 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SCY1-RELATED S/T PROTEIN KINASE-LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Pkinase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Scyl2 PhenoGen
PROSITE PROTEIN_KINASE_DOM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART S_TKc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF56112 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt G5E8J9_MOUSE UniProtKB/TrEMBL
  Q80UY7_MOUSE UniProtKB/TrEMBL
  SCYL2_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q3UT57 UniProtKB/Swiss-Prot
  Q3UWU9 UniProtKB/Swiss-Prot
  Q8K0M4 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-08-26 Scyl2  SCY1-like 2 (S. cerevisiae)  D10Ertd802e  DNA segment, Chr 10, ERATO Doi 802, expressed  Symbol and/or name updated 27372883 PROVISIONAL
2024-08-21 D10Ertd802e  DNA segment, Chr 10, ERATO Doi 802, expressed  Scyl2  SCY1-like 2 (S. cerevisiae)  Symbol and/or name change 5135510 APPROVED