Cacna1c (calcium channel, voltage-dependent, L type, alpha 1C subunit) - Rat Genome Database

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Gene: Cacna1c (calcium channel, voltage-dependent, L type, alpha 1C subunit) Mus musculus
Analyze
Symbol: Cacna1c
Name: calcium channel, voltage-dependent, L type, alpha 1C subunit
RGD ID: 1550302
MGI Page MGI
Description: Enables enzyme binding activity and voltage-gated calcium channel activity involved in cardiac muscle cell action potential. Involved in positive regulation of adenylate cyclase activity. Acts upstream of or within several processes, including adult walking behavior; regulation of blood circulation; and secretion by cell. Located in several cellular components, including T-tubule; Z disc; and dendritic shaft. Part of caveolar macromolecular signaling complex and voltage-gated calcium channel complex. Is expressed in several structures, including central nervous system; eye; genitourinary system; gut; and heart. Used to study Timothy syndrome. Human ortholog(s) of this gene implicated in Brugada syndrome 3; Timothy syndrome; long QT syndrome 8; and neurodevelopmental disorder with hypotonia, language delay, and skeletal defects with or without seizures. Orthologous to human CACNA1C (calcium voltage-gated channel subunit alpha1 C).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: brain class C; calcium channel voltage-dependent alpha1c subunit; calcium channel, L type, alpha-1 polypeptide, isoform 1, cardiac muscle; Cav1; Cav1.2; Cchl1; Cchl1a1; D930026N18Rik; L-type Cav1.2; MBC; MELC-CC; neuronal voltage-gated calcium channel alpha 1C subunit; RIKEN cDNA D930026N18 gene; skeletal muscle-specific calcium channel; voltage-dependent L-type calcium channel subunit alpha-1C; voltage-gated calcium channel subunit alpha Cav1.2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396118,564,201 - 119,174,345 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6118,564,201 - 119,173,851 (-)EnsemblGRCm39 Ensembl
GRCm386118,587,240 - 119,197,384 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6118,587,240 - 119,196,890 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl6118,587,240 - 119,196,418 (-)EnsemblGRCm38mm10GRCm38
MGSCv376118,542,314 - 119,146,427 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366118,558,083 - 119,074,173 (-)NCBIMGSCv36mm8
MGSCv366119,385,868 - 119,901,054 (-)NCBIMGSCv36mm8
Celera6120,420,625 - 121,028,854 (-)NCBICelera
Cytogenetic Map6F1NCBI
cM Map655.86NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
acute stress disorder  (ISO)
alcohol dependence  (ISO)
Alzheimer's disease  (IEP)
amyloidosis  (ISO)
anxiety disorder  (ISO)
arrhythmogenic right ventricular cardiomyopathy  (ISO)
autism spectrum disorder  (ISO)
autistic disorder  (ISO)
bipolar disorder  (ISO)
breast ductal carcinoma  (ISO)
Brugada syndrome  (ISO)
Brugada syndrome 3  (ISO)
Cardiac Arrhythmias  (ISO)
cardiomyopathy  (ISO)
catecholaminergic polymorphic ventricular tachycardia  (ISO)
cerebral palsy  (ISO)
Cognitive Dysfunction  (ISO)
Congenital Limb Deformities  (ISO)
congestive heart failure  (ISO)
dilated cardiomyopathy  (ISO)
epilepsy  (ISO)
esophageal atresia  (ISO)
Familial Ventricular Tachycardia  (ISO)
Fetal Growth Retardation  (ISO)
genetic disease  (ISO)
Genetic Predisposition to Disease  (ISO)
Heart Block  (ISO)
Hyperphosphatemic Familial Tumoral Calcinosis 1  (ISO)
hypertension  (ISO)
hypertrophic cardiomyopathy  (ISO)
hypertrophic cardiomyopathy 1  (ISO)
hypoglycemia  (ISO)
intellectual disability  (ISO)
invasive ductal carcinoma  (ISO)
Joint Instability  (ISO)
Language Development Disorders  (ISO)
long QT syndrome  (ISO)
long QT syndrome 1  (ISO)
long QT syndrome 8  (ISO)
major depressive disorder  (ISO)
neurodevelopmental disorder with dysmorphic facies and distal limb anomalies  (ISO)
neurodevelopmental disorder with hypotonia, language delay, and skeletal defects with or without seizures  (ISO)
Neurodevelopmental Disorders  (ISO)
post-traumatic stress disorder  (ISO)
primary immunodeficiency disease  (ISO)
Psychomotor Agitation  (ISO)
pulmonary valve stenosis  (ISO)
restrictive cardiomyopathy  (ISO)
Romano-Ward Syndrome  (ISO)
schizophrenia  (ISO)
short QT syndrome  (ISO)
Sudden Cardiac Death  (ISO)
Sudden Death  (ISO)
Sudden Unexpected Nocturnal Death Syndrome  (ISO)
Timothy syndrome  (IAGP,ISO)
Tremor  (ISO)
Ventricular Fibrillation, Paroxysmal Familial, 1  (ISO)
Ventricular Tachycardia  (ISO)
Wolff-Parkinson-White syndrome  (ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-pilocarpine  (EXP)
(S)-nicotine  (EXP)
1,2-dimethylhydrazine  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4,6-trinitrobenzenesulfonic acid  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP)
2-(3,4-dimethoxyphenyl)-5-\{[2-(3,4-dimethoxyphenyl)ethyl](methyl)amino\}-2-(propan-2-yl)pentanenitrile  (EXP,ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-nitrophenol  (EXP)
acetamide  (ISO)
aconitine  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
allethrin  (ISO)
amiodarone  (EXP)
amphetamine  (ISO)
androgen antagonist  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (EXP)
astragaloside IV  (ISO)
atenolol  (ISO)
atrazine  (ISO)
Bardoxolone methyl  (ISO)
barium(0)  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[e]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
butanal  (ISO)
Butylparaben  (ISO)
cadmium atom  (EXP,ISO)
cadmium dichloride  (EXP,ISO)
calcium atom  (ISO)
calcium(0)  (ISO)
cantharidin  (EXP)
CGP 52608  (ISO)
chloroprene  (EXP)
chlorpyrifos  (ISO)
cisplatin  (EXP)
crizotinib  (ISO)
cyhalothrin  (ISO)
cypermethrin  (ISO)
DDE  (ISO)
deferiprone  (ISO)
diarsenic trioxide  (EXP)
dibutyl phthalate  (ISO)
diltiazem  (EXP)
dioxygen  (ISO)
disodium selenite  (EXP)
doxorubicin  (ISO)
endosulfan  (ISO)
enzacamene  (ISO)
epoxiconazole  (EXP,ISO)
ethanol  (EXP)
ezogabine  (ISO)
fenvalerate  (ISO)
ferrostatin-1  (EXP)
formaldehyde  (ISO)
fulvestrant  (ISO)
furan  (ISO)
iron atom  (ISO)
iron dextran  (EXP,ISO)
iron(0)  (ISO)
isoprenaline  (ISO)
lead(0)  (ISO)
linsidomine  (ISO)
linuron  (ISO)
malathion  (ISO)
maneb  (EXP)
methamphetamine  (EXP,ISO)
methapyrilene  (ISO)
methotrexate  (ISO)
methoxychlor  (ISO)
methylene blue  (EXP)
mevalonic acid  (ISO)
N-nitrosodiethylamine  (EXP)
nefazodone  (ISO)
nicotine  (EXP)
nifedipine  (EXP,ISO)
nimodipine  (EXP)
Nor-9-carboxy-delta9-THC  (ISO)
paracetamol  (ISO)
paraquat  (EXP,ISO)
peroxynitrous acid  (ISO)
pioglitazone  (EXP)
potassium chloride  (ISO)
pregabalin  (ISO)
prochloraz  (ISO)
procymidone  (ISO)
progesterone  (ISO)
Ptaquiloside  (EXP)
pyrethrins  (ISO)
resveratrol  (EXP)
rotenone  (ISO)
silver atom  (EXP)
silver(0)  (EXP)
simvastatin  (ISO)
sodium arsenate  (EXP)
sodium arsenite  (ISO)
sodium cyanide  (EXP)
sodium disulfite  (ISO)
streptozocin  (EXP)
sulfur dioxide  (ISO)
sunitinib  (EXP,ISO)
tetrachloromethane  (ISO)
thalidomide  (EXP)
titanium dioxide  (EXP)
torcetrapib  (ISO)
trichloroethene  (ISO)
triphenyl phosphate  (ISO)
triptonide  (EXP)
tunicamycin  (EXP)
valproic acid  (ISO)
verapamil  (EXP,ISO)
vinclozolin  (ISO)
zinc atom  (ISO)
zinc sulfate  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
adult walking behavior  (IGI)
axon development  (ISO)
calcium ion import  (ISO)
calcium ion import across plasma membrane  (IBA,IDA)
calcium ion transmembrane transport  (ISO)
calcium ion transmembrane transport via high voltage-gated calcium channel  (ISO,ISS)
calcium ion transport  (IDA,IMP,ISO)
calcium ion transport into cytosol  (ISS)
calcium-ion regulated exocytosis  (IMP)
camera-type eye development  (ISO)
cardiac conduction  (ISO,ISS)
cardiac muscle cell action potential involved in contraction  (ISO)
cell communication involved in cardiac conduction  (IDA)
cellular response to amyloid-beta  (ISO)
cerebral cortex development  (ISO)
chemical synaptic transmission  (IMP)
corpus callosum development  (ISO)
embryonic forelimb morphogenesis  (ISO)
establishment of localization in cell  (IDA,IMP)
exocytosis  (ISO)
glucose homeostasis  (IMP)
growth hormone secretion  (IDA)
heart development  (ISO)
immune system development  (ISO)
insulin secretion  (IMP)
intracellular calcium ion homeostasis  (IMP)
membrane depolarization during atrial cardiac muscle cell action potential  (ISO,ISS)
membrane depolarization during AV node cell action potential  (ISO)
membrane depolarization during cardiac muscle cell action potential  (ISO,ISS)
monoatomic ion transmembrane transport  (IEA)
monoatomic ion transport  (IEA)
optic nerve development  (ISO)
positive regulation of adenylate cyclase activity  (IDA)
positive regulation of calcium ion transmembrane transport via high voltage-gated calcium channel  (ISO)
positive regulation of cytosolic calcium ion concentration  (ISO)
positive regulation of insulin secretion  (ISO)
positive regulation of membrane depolarization  (ISO)
positive regulation of muscle contraction  (NAS)
regulation of blood pressure  (IMP)
regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion  (ISS)
regulation of heart rate by cardiac conduction  (ISO,ISS)
regulation of organ growth  (IMP)
regulation of vasoconstriction  (IMP)
regulation of ventricular cardiac muscle cell action potential  (ISO,ISS)
response to alcohol  (ISO)
response to nutrient levels  (ISO)
response to organic cyclic compound  (ISO)
smooth muscle contraction  (IMP)
smooth muscle contraction involved in micturition  (IMP)
transmembrane transport  (IEA)
visual learning  (IMP)

Molecular Pathway Annotations     Click to see Annotation Detail View
acebutolol pharmacodynamics pathway   (ISO)
adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway   (ISO)
Alzheimer's disease pathway  (IEA)
amiodarone pharmacodynamics pathway  (ISO)
amlodipine pharmacodynamics pathway  (ISO)
arrhythmogenic right ventricular cardiomyopathy pathway  (IEA)
atenolol pharmacodynamics pathway  (ISO)
betaxolol pharmacodynamics pathway  (ISO)
bisoprolol pharmacodynamics pathway  (ISO)
bupranolol drug pathway  (ISO)
bupranolol pharmacodynamics pathway   (ISO)
calcium transport pathway   (ISO)
calcium/calcium-mediated signaling pathway   (ISO)
calcium/calmodulin dependent kinase 2 signaling pathway  (ISO)
carvedilol pharmacodynamics pathway  (ISO)
dilated cardiomyopathy pathway  (IEA)
diltiazem pharmacodynamics pathway  (ISO)
disopyramide pharmacodynamics pathway  (ISO)
dobutamine pharmacodynamics pathway  (ISO)
esmolol pharmacodynamics pathway  (ISO)
felodipine pharmacokinetics pathway  (ISO)
flecainde pharmacodynamics pathway  (ISO)
fosphenytoin pharmacodynamics pathway  (ISO)
glutamate signaling pathway  (IEA)
gonadotropin-releasing hormone signaling pathway  (IEA)
hypertrophic cardiomyopathy pathway  (IEA)
ibutilide pharmacodynamics pathway   (ISO)
insulin secretion pathway  (TAS)
isoprenaline pharmacodynamics pathway  (ISO)
isradipine pharmacodynamics pathway  (ISO)
levobunolol pharmacodynamics pathway  (ISO)
lidocaine pharmacodynamics pathway  (ISO)
long term potentiation  (IEA)
metoprolol pharmacodynamics pathway  (ISO)
mexiletine pharmacodynamics pathway   (ISO)
mitogen activated protein kinase signaling pathway  (IEA)
nadolol pharmacodynamics pathway  (ISO)
nebivolol pharmacodynamics pathway  (ISO)
nifedipine pharmacodynamics pathway  (ISO)
nimodipine pharmacodynamics pathway  (ISO)
nisoldipine pharmacodynamics pathway  (ISO)
nitrendipine pharmacodynamics pathway  (ISO)
penbutolol pharmacodynamics pathway  (ISO)
phenytoin pharmacodynamics pathway  (ISO)
pindolol pharmacodynamics pathway  (ISO)
procainamide pharmacodynamics pathway  (ISO)
propranolol pharmacodynamics pathway  (ISO)
quinidine pharmacodynamics pathway  (ISO)
sotalol pharmacodynamics pathway  (ISO)
timolol pharmacodynamics pathway   (ISO)
type 2 diabetes mellitus pathway  (IEA)
verapamil pharmacodynamics pathway  (ISO)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal brain morphology  (IAGP)
abnormal calcium ion homeostasis  (IAGP)
abnormal cardiac muscle contractility  (IAGP)
abnormal caudal vertebrae morphology  (IEA)
abnormal CNS synaptic transmission  (IAGP)
abnormal embryonic tissue morphology  (IAGP)
abnormal fetal cardiomyocyte physiology  (IAGP)
abnormal kidney morphology  (IEA)
abnormal learning/memory/conditioning  (IAGP)
abnormal liver morphology  (IEA)
abnormal long-term spatial reference memory  (IAGP)
abnormal motor capabilities/coordination/movement  (IAGP)
abnormal muscle electrophysiology  (IAGP)
abnormal myocardial fiber physiology  (IAGP)
abnormal nervous system physiology  (IAGP)
abnormal neuron physiology  (IAGP)
abnormal pancreatic beta cell physiology  (IAGP)
abnormal placenta morphology  (IEA)
abnormal social investigation  (IAGP)
abnormal spleen morphology  (IEA)
behavioral despair  (IAGP)
cardiac hypertrophy  (IAGP)
congestive heart failure  (IAGP)
decreased aerobic running capacity  (IAGP)
decreased calcium uptake by cardiac muscle  (IAGP)
decreased cardiac muscle contractility  (IAGP)
decreased circulating insulin level  (IAGP)
decreased exploration in new environment  (IAGP)
decreased heart rate  (IAGP)
decreased insulin secretion  (IAGP)
decreased locomotor activity  (IEA)
decreased vocalization  (IAGP)
dermatitis  (IAGP)
dilated heart ventricle  (IAGP)
enhanced contextual conditioning behavior  (IAGP)
enhanced cued conditioning behavior  (IAGP)
enlarged lateral ventricles  (IAGP)
enlarged spleen  (IEA)
excessive scratching  (IAGP)
heart right ventricle hypertrophy  (IAGP)
impaired coordination  (IEA)
impaired glucose tolerance  (IAGP)
increased chemical nociceptive threshold  (IAGP)
increased circulating glucose level  (IAGP)
increased freezing behavior  (IEA)
increased heart weight  (IAGP)
increased myocardial fiber size  (IAGP)
increased stereotypic behavior  (IAGP)
increased thigmotaxis  (IEA)
internal hemorrhage  (IAGP)
irregular heartbeat  (IAGP)
lethality throughout fetal growth and development, complete penetrance  (IAGP)
lethality throughout fetal growth and development, incomplete penetrance  (IAGP)
neonatal lethality, complete penetrance  (IAGP)
patent ductus arteriosus  (IAGP)
postnatal lethality, complete penetrance  (IAGP)
premature death  (IAGP)
prenatal lethality prior to heart atrial septation  (IEA)
preweaning lethality, complete penetrance  (IEA)
small kidney  (IEA)
small liver  (IEA)
References

References - curated
# Reference Title Reference Citation
1. Voltage-gated calcium channels. Catterall WA Cold Spring Harb Perspect Biol. 2011 Aug 1;3(8):a003947. doi: 10.1101/cshperspect.a003947.
2. The gene for the alpha 1 subunit of the skeletal muscle dihydropyridine-sensitive calcium channel (Cchl1a3) maps to mouse chromosome 1. Chin H, etal., Genomics 1992 Dec;14(4):1089-91.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. MGD IEA MGD IEA
5. The alterations of Ca2+/calmodulin/CaMKII/CaV1.2 signaling in experimental models of Alzheimer's disease and vascular dementia. Min D, etal., Neurosci Lett. 2013 Mar 22;538:60-5. doi: 10.1016/j.neulet.2013.02.001. Epub 2013 Feb 8.
6. Alcohol Withdrawal-Induced Seizure Susceptibility is Associated with an Upregulation of CaV1.3 Channels in the Rat Inferior Colliculus. N'Gouemo P, etal., Int J Neuropsychopharmacol. 2015 Jan 2;18(7):pyu123. doi: 10.1093/ijnp/pyu123.
7. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
8. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
9. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
10. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
11. Mouse MP Annotation Import Pipeline RGD automated import pipeline
12. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
13. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
14. New therapeutic targets in cardiology: arrhythmias and Ca2+/calmodulin-dependent kinase II (CaMKII). Rokita AG and Anderson ME, Circulation. 2012 Oct 23;126(17):2125-39. doi: 10.1161/CIRCULATIONAHA.112.124990.
15. Severe arrhythmia disorder caused by cardiac L-type calcium channel mutations. Splawski I, etal., Proc Natl Acad Sci U S A. 2005 Jun 7;102(23):8089-96; discussion 8086-8. Epub 2005 Apr 29.
16. Differential Roles for L-Type Calcium Channel Subtypes in Alcohol Dependence. Uhrig S, etal., Neuropsychopharmacology. 2017 Apr;42(5):1058-1069. doi: 10.1038/npp.2016.266. Epub 2016 Dec 1.
17. The levels of Pdx1/insulin, Cacna1c and Cacna1d, and β-cell mass in a rat model of intrauterine undernutrition. Xu YP, etal., J Matern Fetal Neonatal Med. 2011 Mar;24(3):437-43. doi: 10.3109/14767058.2010.497571. Epub 2010 Sep 27.
18. The role of voltage-gated calcium channels in pancreatic beta-cell physiology and pathophysiology. Yang SN and Berggren PO, Endocr Rev. 2006 Oct;27(6):621-76. Epub 2006 Jul 25.
Additional References at PubMed
PMID:1281468   PMID:1385406   PMID:2173707   PMID:3315915   PMID:7598723   PMID:7635187   PMID:7814415   PMID:8381753   PMID:8889548   PMID:9004034   PMID:9236206   PMID:9882694  
PMID:10349636   PMID:10479680   PMID:10973973   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11296258   PMID:11784029   PMID:12477932   PMID:12562828   PMID:12593842   PMID:12606379  
PMID:12761855   PMID:12881419   PMID:12900400   PMID:12973680   PMID:14525809   PMID:14530442   PMID:14597716   PMID:14609949   PMID:14610273   PMID:14674701   PMID:15090038   PMID:15108317  
PMID:15132976   PMID:15146240   PMID:15451373   PMID:15504730   PMID:15747579   PMID:16029198   PMID:16059921   PMID:16141072   PMID:16141073   PMID:16251435   PMID:16267232   PMID:16306443  
PMID:16352659   PMID:16397145   PMID:16542784   PMID:16636102   PMID:16648185   PMID:16648270   PMID:16706838   PMID:16787652   PMID:16820363   PMID:16980345   PMID:16985003   PMID:16987237  
PMID:17015854   PMID:17114649   PMID:17279627   PMID:17289261   PMID:17409250   PMID:17526649   PMID:17673505   PMID:17767505   PMID:18045623   PMID:18174367   PMID:18287559   PMID:18441291  
PMID:18586882   PMID:18809727   PMID:18829456   PMID:18832749   PMID:18927079   PMID:19091974   PMID:19230140   PMID:19261907   PMID:19383796   PMID:19422811   PMID:19447492   PMID:19461046  
PMID:19478199   PMID:19520970   PMID:19564422   PMID:19713767   PMID:19723630   PMID:20014384   PMID:20016080   PMID:20110531   PMID:20169111   PMID:20188150   PMID:20190743   PMID:20299662  
PMID:20371628   PMID:20413896   PMID:20479240   PMID:20573883   PMID:20579880   PMID:20639889   PMID:20671242   PMID:20723887   PMID:20937870   PMID:20942845   PMID:21054386   PMID:21111744  
PMID:21186355   PMID:21216955   PMID:21220429   PMID:21224388   PMID:21267068   PMID:21282112   PMID:21282332   PMID:21486818   PMID:21493898   PMID:21521762   PMID:21665954   PMID:21670503  
PMID:21677750   PMID:21700933   PMID:21737792   PMID:21832054   PMID:21873635   PMID:21878566   PMID:22133878   PMID:22307641   PMID:22310722   PMID:22355118   PMID:22589547   PMID:22665262  
PMID:22677788   PMID:22826131   PMID:23010509   PMID:23045342   PMID:23144896   PMID:23183239   PMID:23206450   PMID:23275972   PMID:23313911   PMID:23338940   PMID:23549079   PMID:23613729  
PMID:23686856   PMID:23734214   PMID:23752588   PMID:23761887   PMID:23946491   PMID:23950737   PMID:24086669   PMID:24215710   PMID:24218620   PMID:24253251   PMID:24371506   PMID:24453333  
PMID:24470632   PMID:24687990   PMID:24760982   PMID:24778262   PMID:24848473   PMID:24849370   PMID:24925129   PMID:24934288   PMID:24936064   PMID:24941892   PMID:24952909   PMID:25238857  
PMID:25277766   PMID:25292336   PMID:25368181   PMID:25505241   PMID:25542980   PMID:25627864   PMID:25758429   PMID:25798587   PMID:25845695   PMID:25846713   PMID:25868801   PMID:25888683  
PMID:25918050   PMID:25979088   PMID:25989111   PMID:26242732   PMID:26307267   PMID:26378152   PMID:26758845   PMID:26831068   PMID:26897459   PMID:27066530   PMID:27103070   PMID:27247394  
PMID:27522668   PMID:27535226   PMID:27618673   PMID:27624941   PMID:27725084   PMID:27798140   PMID:27864509   PMID:27922594   PMID:27957527   PMID:28054347   PMID:28119457   PMID:28119464  
PMID:28119465   PMID:28165117   PMID:28185965   PMID:28186690   PMID:28230278   PMID:28363979   PMID:28490495   PMID:28584287   PMID:28604818   PMID:28753255   PMID:28778765   PMID:28784807  
PMID:28899915   PMID:28921675   PMID:28949795   PMID:29038219   PMID:29089442   PMID:29107716   PMID:29202453   PMID:29773754   PMID:29779930   PMID:30001160   PMID:30025125   PMID:30102687  
PMID:30151840   PMID:30158642   PMID:30176250   PMID:30241939   PMID:30309679   PMID:30422117   PMID:30554585   PMID:30629744   PMID:30714156   PMID:30786075   PMID:30787001   PMID:30821687  
PMID:31120193   PMID:31121355   PMID:31194991   PMID:31216184   PMID:31235768   PMID:31355778   PMID:31430211   PMID:31591237   PMID:31605513   PMID:31868578   PMID:31919478   PMID:32015129  
PMID:32109384   PMID:32169969   PMID:32187825   PMID:32325033   PMID:32332705   PMID:32332995   PMID:32598571   PMID:32859919   PMID:32994313   PMID:33069962   PMID:33082339   PMID:33558236  
PMID:33589793   PMID:33597309   PMID:33602505   PMID:33636223   PMID:33836587   PMID:34023501   PMID:34072954   PMID:34321999   PMID:34851661   PMID:34930830   PMID:35013113   PMID:35104251  
PMID:35130614   PMID:35406677   PMID:35412911   PMID:35675413   PMID:36162529   PMID:36550186   PMID:36714313   PMID:36846334   PMID:36877136   PMID:37261735   PMID:37371137   PMID:37739992  
PMID:38167790   PMID:38355793   PMID:38507409   PMID:38877142  


Genomics

Comparative Map Data
Cacna1c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396118,564,201 - 119,174,345 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6118,564,201 - 119,173,851 (-)EnsemblGRCm39 Ensembl
GRCm386118,587,240 - 119,197,384 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6118,587,240 - 119,196,890 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl6118,587,240 - 119,196,418 (-)EnsemblGRCm38mm10GRCm38
MGSCv376118,542,314 - 119,146,427 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366118,558,083 - 119,074,173 (-)NCBIMGSCv36mm8
MGSCv366119,385,868 - 119,901,054 (-)NCBIMGSCv36mm8
Celera6120,420,625 - 121,028,854 (-)NCBICelera
Cytogenetic Map6F1NCBI
cM Map655.86NCBI
CACNA1C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38121,970,780 - 2,697,950 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl121,970,772 - 2,697,950 (+)EnsemblGRCh38hg38GRCh38
GRCh37122,162,153 - 2,807,116 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36122,032,725 - 2,677,376 (+)NCBINCBI36Build 36hg18NCBI36
Build 34122,032,724 - 2,672,368NCBI
Celera123,770,102 - 4,421,688 (+)NCBICelera
Cytogenetic Map12p13.33NCBI
HuRef122,016,425 - 2,664,566 (+)NCBIHuRef
CHM1_1122,161,408 - 2,806,152 (+)NCBICHM1_1
T2T-CHM13v2.0121,965,666 - 2,703,402 (+)NCBIT2T-CHM13v2.0
Cacna1c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84153,431,169 - 154,051,932 (-)NCBIGRCr8
mRatBN7.24151,764,138 - 152,379,454 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4151,764,138 - 152,379,648 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4158,028,661 - 158,645,825 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04153,812,328 - 154,429,518 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04152,435,662 - 153,052,854 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04150,635,808 - 151,270,790 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4150,641,066 - 150,829,913 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04216,562,477 - 217,184,927 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44154,895,691 - 155,517,389 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14155,140,531 - 155,762,230 (-)NCBI
Celera4140,633,057 - 141,244,304 (-)NCBICelera
Cytogenetic Map4q42NCBI
Cacna1c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554544,490,923 - 5,198,506 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554544,573,647 - 5,199,046 (+)NCBIChiLan1.0ChiLan1.0
CACNA1C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2107,594,561 - 8,246,448 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1127,591,331 - 8,243,218 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0122,166,672 - 2,817,827 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1122,031,317 - 2,745,113 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl122,114,140 - 2,744,826 (+)Ensemblpanpan1.1panPan2
CACNA1C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12744,007,363 - 44,748,251 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2744,008,020 - 44,746,429 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha271,930,129 - 2,677,673 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02744,377,759 - 45,118,301 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12744,305,678 - 45,048,124 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02744,278,568 - 45,019,930 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0271,287,600 - 2,035,369 (-)NCBIUU_Cfam_GSD_1.0
Cacna1c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945106,316,518 - 106,936,642 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366062,168,625 - 2,865,758 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366062,168,104 - 2,867,560 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CACNA1C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl569,275,176 - 69,448,430 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1569,016,954 - 69,448,428 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2571,339,366 - 71,731,255 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CACNA1C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1112,107,722 - 2,753,970 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl112,508,705 - 2,752,991 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660635,568,387 - 6,218,696 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cacna1c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473510,201,526 - 10,432,896 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473510,201,030 - 10,927,349 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cacna1c
22671 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2389
Count of miRNA genes:402
Interacting mature miRNAs:458
Transcripts:ENSMUST00000075591, ENSMUST00000078320, ENSMUST00000112790, ENSMUST00000112793, ENSMUST00000112825
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142079Skmw15_mskeletal muscle weight 15 (mouse)Not determined6116829851149588044Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683690851146954059Mouse
11252138Clas1_mcarcinogen-induced lung adenoma susceptibility 1 (mouse)6112246918146954059Mouse
8552704Cia43_mcollagen induced arthritis QTL 43 (mouse)Not determined6114159241119737532Mouse
1300887Pabr1_mplasma apolipoprotein B (human) regulator 1 (mouse)Not determined6103754405136400690Mouse
1301915Chab3_mcholesterol absorption 3 (mouse)Not determined698908709132916997Mouse
1301083Bhr5_mbronchial hyperresponsiveness 5 (mouse)Not determined6115694477132578150Mouse
1301658Radpf3_mradiation pulmonary fibrosis 3 (mouse)Not determined6115219814146330736Mouse
10043923Bhr7_mbronchial hyperresponsiveness 7 (mouse)Not determined698219814132219938Mouse
4141940W6q5_mweight 6 weeks QTL 5 (mouse)Not determined96632912146535124Mouse
4140980Mvwf2_mmodifier of von Willebrand factor 2 (mouse)Not determined114345693145601739Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46912919136400690Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648696934125336963Mouse
4141295Rua_mraffinose acetate tasting (mouse)Not determined115546805149549364Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648696934148351498Mouse
1301509Sluc3_msusceptibility to lung cancer 3 (mouse)Not determined6104480321127019938Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648703490125333748Mouse
1301262Gasa3_mgastritis type A susceptibility locus 3 (mouse)Not determined688982366122982564Mouse
1301518Bbaa5_mB.burgdorferi-associated arthritis 5 (mouse)Not determined698483798145881170Mouse
11353842Bmiq4_mbody mass index QTL 4 (mouse)692584287146330736Mouse
1302131Bmd8_mbone mineral density 8 (mouse)Not determined699132089133132228Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645290993128811995Mouse
1301744Hdlq11_mHDL QTL 11 (mouse)Not determined687480321121480516Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
1357555Tesq2_mtestis weight QTL 2 (mouse)Not determined696632912146535124Mouse
10043891Tilss4_mTNF-induced lethal shock susceptibility 3 (mouse)Not determined6112246918125333748Mouse
1301244Ichs_mimmediate cutaneous hypersensitivity QTL (mouse)Not determined690772571124772807Mouse
4142416Egq11_mearly growth QTL 11 (mouse)Not determined96632912146535124Mouse
1301923Lith6_mlithogenic gene 6 (mouse)Not determined698694477132694676Mouse
10412207Cypr5_mcytokine production 5 (mouse)Not determined6110815180144815323Mouse
1300704Cia3_mcollagen induced arthritis QTL 3 (mouse)Not determined696324286130324483Mouse
1301152Athsq2_matherosclerosis susceptibility QTL 2 (mouse)Not determined6117059949149588044Mouse
13463481Mcvq14_mmean corpuscular volume QTL 14 (mouse)6111142448145142541Mouse
1301927Etohcta6_methanol conditioned taste aversion 6 (mouse)Not determined6115578005149578150Mouse
4141194Cyx_mcycloheximide tasting (mouse)Not determined115546805149549364Mouse
4141064Ath37_matherosclerosis 37 (mouse)Not determined6116641858128495988Mouse
1357806Aaj3_manxiety in A/J 3 (mouse)Not determined6104480321136400690Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673476983134676963Mouse
4141699Ibdq2_minflammatory bowel disease QTL 2 (mouse)Not determined105982366120894102Mouse
4141889Qui_mquinine sensitivity, taste (mouse)Not determined115546805149549364Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678606487121092347Mouse
1301292Cfbw2_mcystic fibrosis body weight 2 (mouse)Not determined694981612128981699Mouse
11040599Lmr4b_mleishmaniasis resistance 4b (mouse)696324286130324483Mouse

Markers in Region
Cacna1c  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv376118,625,841 - 118,626,380UniSTSGRCm37
MGSCv376118,701,446 - 118,701,536UniSTSGRCm37
Celera6120,579,802 - 120,579,892UniSTS
Celera6120,504,142 - 120,504,681UniSTS
Cytogenetic Map6F1UniSTS
cM Map656.0UniSTS
cM Map656.0UniSTS
12.MMHAP70FLD3.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386118,877,409 - 118,877,565UniSTSGRCm38
MGSCv376118,827,427 - 118,827,583UniSTSGRCm37
Celera6120,705,958 - 120,706,114UniSTS
Cytogenetic Map6F1UniSTS
cM Map656.0UniSTS
Whitehead/MRC_RH61216.17UniSTS
Whitehead_YAC6 UniSTS
D6Mit253  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386118,832,344 - 118,832,422UniSTSGRCm38
MGSCv376118,782,362 - 118,782,440UniSTSGRCm37
Celera6120,660,792 - 120,660,870UniSTS
Cytogenetic Map6F1UniSTS
cM Map651.0UniSTS
Whitehead Genetic648.1UniSTS
L01776  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386118,593,428 - 118,593,547UniSTSGRCm38
MGSCv376118,543,446 - 118,543,565UniSTSGRCm37
Celera6120,421,758 - 120,421,877UniSTS
Cytogenetic Map6F1UniSTS
cM Map656.0UniSTS
Whitehead/MRC_RH61224.87UniSTS
D4MGH30  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386118,638,251 - 118,638,390UniSTSGRCm38
MGSCv376118,588,269 - 118,588,408UniSTSGRCm37
Celera6120,466,562 - 120,466,699UniSTS
Cytogenetic Map6F1UniSTS
cM Map656.0UniSTS
D4Arb4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386118,638,258 - 118,638,432UniSTSGRCm38
MGSCv376118,588,276 - 118,588,450UniSTSGRCm37
Celera6120,466,569 - 120,466,741UniSTS
Cytogenetic Map6F1UniSTS
cM Map656.0UniSTS
Cacna1c  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386118,675,823 - 118,676,362UniSTSGRCm38
MGSCv376118,625,841 - 118,626,380UniSTSGRCm37
Celera6120,504,142 - 120,504,681UniSTS
Cytogenetic Map6F1UniSTS
cM Map656.0UniSTS
Cacna1c  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386118,751,428 - 118,751,518UniSTSGRCm38
MGSCv376118,701,446 - 118,701,536UniSTSGRCm37
Celera6120,579,802 - 120,579,892UniSTS
Cytogenetic Map6F1UniSTS
Cacna1c  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6F1UniSTS


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001159533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001159534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001159535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001255997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001255998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001255999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001256000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001256001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001256002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001290335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_009781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011241175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011241176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011241184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011241185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011241186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011241187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011241192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011241193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017321358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017321362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB259049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB259050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB259051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC036121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC115816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC126453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC127328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC163353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK142841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW047472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY728090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC094579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC138031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP764785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM872409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM872410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM872411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM872412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM872413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM872414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L06233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M57973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U17869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X98324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000075591   ⟹   ENSMUSP00000075021
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6118,569,903 - 119,085,150 (-)Ensembl
GRCm38.p6 Ensembl6118,592,942 - 119,108,189 (-)Ensembl
Ensembl Acc Id: ENSMUST00000078320   ⟹   ENSMUSP00000077433
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6118,569,425 - 119,085,150 (-)Ensembl
GRCm38.p6 Ensembl6118,592,464 - 119,108,189 (-)Ensembl
Ensembl Acc Id: ENSMUST00000112790   ⟹   ENSMUSP00000108410
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6118,569,903 - 119,085,197 (-)Ensembl
GRCm38.p6 Ensembl6118,592,942 - 119,108,236 (-)Ensembl
Ensembl Acc Id: ENSMUST00000112793   ⟹   ENSMUSP00000108413
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6118,570,853 - 119,084,936 (-)Ensembl
GRCm38.p6 Ensembl6118,593,892 - 119,107,975 (-)Ensembl
Ensembl Acc Id: ENSMUST00000112825   ⟹   ENSMUSP00000108444
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6118,569,280 - 118,734,935 (-)Ensembl
GRCm38.p6 Ensembl6118,592,319 - 118,757,974 (-)Ensembl
Ensembl Acc Id: ENSMUST00000185345   ⟹   ENSMUSP00000140833
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6118,570,754 - 119,084,936 (-)Ensembl
GRCm38.p6 Ensembl6118,593,793 - 119,107,975 (-)Ensembl
Ensembl Acc Id: ENSMUST00000186889   ⟹   ENSMUSP00000140056
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6118,564,201 - 119,173,192 (-)Ensembl
GRCm38.p6 Ensembl6118,587,240 - 119,196,231 (-)Ensembl
Ensembl Acc Id: ENSMUST00000187317   ⟹   ENSMUSP00000140693
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6118,570,754 - 119,084,936 (-)Ensembl
GRCm38.p6 Ensembl6118,593,793 - 119,107,975 (-)Ensembl
Ensembl Acc Id: ENSMUST00000187386   ⟹   ENSMUSP00000140341
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6118,570,760 - 119,056,968 (-)Ensembl
GRCm38.p6 Ensembl6118,593,799 - 119,080,007 (-)Ensembl
Ensembl Acc Id: ENSMUST00000187474   ⟹   ENSMUSP00000140961
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6118,570,608 - 119,173,348 (-)Ensembl
GRCm38.p6 Ensembl6118,593,647 - 119,196,387 (-)Ensembl
Ensembl Acc Id: ENSMUST00000187849
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6118,590,987 - 118,604,907 (-)Ensembl
GRCm38.p6 Ensembl6118,614,026 - 118,627,946 (-)Ensembl
Ensembl Acc Id: ENSMUST00000187940   ⟹   ENSMUSP00000141033
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6118,570,043 - 119,173,379 (-)Ensembl
GRCm38.p6 Ensembl6118,593,082 - 119,196,418 (-)Ensembl
Ensembl Acc Id: ENSMUST00000188078   ⟹   ENSMUSP00000140415
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6118,570,754 - 119,084,936 (-)Ensembl
GRCm38.p6 Ensembl6118,593,793 - 119,107,975 (-)Ensembl
Ensembl Acc Id: ENSMUST00000188106   ⟹   ENSMUSP00000140886
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6118,570,853 - 119,084,936 (-)Ensembl
GRCm38.p6 Ensembl6118,593,892 - 119,107,975 (-)Ensembl
Ensembl Acc Id: ENSMUST00000188181
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6118,569,280 - 118,734,935 (-)Ensembl
GRCm38.p6 Ensembl6118,592,319 - 118,757,974 (-)Ensembl
Ensembl Acc Id: ENSMUST00000188522   ⟹   ENSMUSP00000140920
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6118,570,608 - 119,085,534 (-)Ensembl
GRCm38.p6 Ensembl6118,593,647 - 119,108,573 (-)Ensembl
Ensembl Acc Id: ENSMUST00000188865   ⟹   ENSMUSP00000139981
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6118,570,754 - 119,084,936 (-)Ensembl
GRCm38.p6 Ensembl6118,593,793 - 119,107,975 (-)Ensembl
Ensembl Acc Id: ENSMUST00000189057
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6118,923,124 - 119,173,370 (-)Ensembl
GRCm38.p6 Ensembl6118,946,163 - 119,196,409 (-)Ensembl
Ensembl Acc Id: ENSMUST00000189389   ⟹   ENSMUSP00000139855
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6118,570,754 - 119,084,936 (-)Ensembl
GRCm38.p6 Ensembl6118,593,793 - 119,107,975 (-)Ensembl
Ensembl Acc Id: ENSMUST00000189520   ⟹   ENSMUSP00000140220
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6118,570,754 - 119,084,936 (-)Ensembl
GRCm38.p6 Ensembl6118,593,793 - 119,107,975 (-)Ensembl
Ensembl Acc Id: ENSMUST00000189930
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6118,679,178 - 118,684,108 (-)Ensembl
GRCm38.p6 Ensembl6118,702,217 - 118,707,147 (-)Ensembl
Ensembl Acc Id: ENSMUST00000190285   ⟹   ENSMUSP00000141015
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6118,570,853 - 119,173,192 (-)Ensembl
GRCm38.p6 Ensembl6118,593,892 - 119,196,231 (-)Ensembl
Ensembl Acc Id: ENSMUST00000191196
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6118,569,265 - 118,572,387 (-)Ensembl
GRCm38.p6 Ensembl6118,592,304 - 118,595,426 (-)Ensembl
Ensembl Acc Id: ENSMUST00000219018   ⟹   ENSMUSP00000151863
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6118,569,280 - 118,757,285 (-)Ensembl
GRCm38.p6 Ensembl6118,592,319 - 118,780,324 (-)Ensembl
Ensembl Acc Id: ENSMUST00000219223   ⟹   ENSMUSP00000151391
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6118,569,280 - 118,757,285 (-)Ensembl
GRCm38.p6 Ensembl6118,592,319 - 118,780,324 (-)Ensembl
Ensembl Acc Id: ENSMUST00000219833   ⟹   ENSMUSP00000151462
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6118,569,280 - 118,757,285 (-)Ensembl
GRCm38.p6 Ensembl6118,592,319 - 118,780,324 (-)Ensembl
Ensembl Acc Id: ENSMUST00000220022   ⟹   ENSMUSP00000151458
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6118,569,280 - 118,757,285 (-)Ensembl
GRCm38.p6 Ensembl6118,592,319 - 118,780,324 (-)Ensembl
Ensembl Acc Id: ENSMUST00000239204   ⟹   ENSMUSP00000159252
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6118,932,533 - 119,173,851 (-)Ensembl
GRCm38.p6 Ensembl6118,955,572 - 119,196,890 (-)Ensembl
RefSeq Acc Id: NM_001159533   ⟹   NP_001153005
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396118,564,201 - 119,085,456 (-)NCBI
GRCm386118,587,240 - 119,108,495 (-)NCBI
MGSCv376118,542,314 - 119,146,427 (-)RGD
Celera6120,415,566 - 121,028,854 (-)NCBI
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001159534   ⟹   NP_001153006
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396118,564,201 - 119,085,456 (-)NCBI
GRCm386118,587,240 - 119,108,495 (-)NCBI
MGSCv376118,542,314 - 119,146,427 (-)RGD
Celera6120,415,566 - 121,028,854 (-)NCBI
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001159535   ⟹   NP_001153007
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396118,564,201 - 119,085,456 (-)NCBI
GRCm386118,587,240 - 119,108,495 (-)NCBI
MGSCv376118,542,314 - 119,146,427 (-)RGD
Celera6120,415,566 - 121,028,854 (-)NCBI
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001255997   ⟹   NP_001242926
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396118,564,201 - 119,173,370 (-)NCBI
GRCm386118,587,240 - 119,196,409 (-)NCBI
Celera6120,415,566 - 121,028,854 (-)NCBI
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001255998   ⟹   NP_001242927
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396118,564,201 - 119,173,370 (-)NCBI
GRCm386118,587,240 - 119,196,409 (-)NCBI
Celera6120,415,566 - 121,028,854 (-)NCBI
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001255999   ⟹   NP_001242928
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396118,564,201 - 119,173,370 (-)NCBI
GRCm386118,587,240 - 119,196,409 (-)NCBI
Celera6120,415,566 - 121,028,854 (-)NCBI
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001256000   ⟹   NP_001242929
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396118,564,201 - 119,085,456 (-)NCBI
GRCm386118,587,240 - 119,108,495 (-)NCBI
Celera6120,415,566 - 121,028,854 (-)NCBI
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001256001   ⟹   NP_001242930
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396118,564,201 - 119,085,456 (-)NCBI
GRCm386118,587,240 - 119,108,495 (-)NCBI
Celera6120,415,566 - 121,028,854 (-)NCBI
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001256002   ⟹   NP_001242931
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396118,564,201 - 119,085,456 (-)NCBI
GRCm386118,587,240 - 119,108,495 (-)NCBI
Celera6120,415,566 - 121,028,854 (-)NCBI
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001290335   ⟹   NP_001277264
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396118,564,201 - 118,734,935 (-)NCBI
GRCm386118,587,240 - 118,757,974 (-)NCBI
Celera6120,415,566 - 121,028,854 (-)NCBI
Sequence:
RefSeq Acc Id: NM_009781   ⟹   NP_033911
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396118,564,201 - 119,173,370 (-)NCBI
GRCm386118,587,240 - 119,196,409 (-)NCBI
MGSCv376118,542,314 - 119,146,427 (-)RGD
Celera6120,415,566 - 121,028,854 (-)NCBI
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006505415   ⟹   XP_006505478
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396118,564,201 - 119,174,345 (-)NCBI
GRCm386118,587,240 - 119,197,384 (-)NCBI
Sequence: